Wall clock time and date at job start Wed Apr 1 2020 01:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46868 * 2 1 4 4 C 1.53004 * 109.46794 * 240.00718 * 2 1 3 5 5 C 1.50697 * 109.47424 * 64.99967 * 4 2 1 6 6 N 1.34769 * 120.00253 * 179.97438 * 5 4 2 7 7 O 1.21287 * 120.00046 * 359.97438 * 5 4 2 8 8 C 1.50693 * 109.47319 * 120.00712 * 2 1 3 9 9 O 1.21283 * 120.00020 * 120.00477 * 8 2 1 10 10 N 1.34777 * 120.00002 * 299.99579 * 8 2 1 11 11 C 1.47581 * 134.49126 * 4.96633 * 10 8 2 12 12 C 1.53946 * 86.23909 * 204.68926 * 11 10 8 13 13 C 1.47928 * 134.63530 * 185.03888 * 10 8 2 14 14 H 1.08996 * 113.77126 * 269.61433 * 13 10 8 15 15 C 1.53011 * 113.86565 * 40.99131 * 13 10 8 16 16 N 1.46500 * 109.46885 * 279.04257 * 15 13 10 17 17 C 1.34776 * 119.99767 * 184.80701 * 16 15 13 18 18 O 1.21281 * 120.00061 * 0.02562 * 17 16 15 19 19 C 1.50699 * 120.00124 * 180.02562 * 17 16 15 20 20 S 1.81001 * 109.47421 * 180.02562 * 19 17 16 21 21 C 1.76197 * 100.00288 * 179.97438 * 20 19 17 22 22 H 1.08005 * 119.99729 * 359.97438 * 21 20 19 23 23 C 1.38802 * 120.00139 * 179.97438 * 21 20 19 24 24 N 1.31630 * 119.99786 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 119.99921 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46868 * 60.00511 * 25 23 21 27 27 H 1.48500 * 109.47242 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47310 * 300.00484 * 25 23 21 29 29 H 1.09001 * 109.47279 * 299.99206 * 1 2 3 30 30 H 1.08991 * 109.47335 * 59.99553 * 1 2 3 31 31 H 1.09002 * 109.46745 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46555 * 184.99561 * 4 2 1 33 33 H 1.09001 * 109.47437 * 304.99291 * 4 2 1 34 34 H 0.97002 * 120.00351 * 359.97438 * 6 5 4 35 35 H 0.97000 * 120.00371 * 179.97438 * 6 5 4 36 36 H 1.08999 * 113.77113 * 90.33279 * 11 10 8 37 37 H 1.09004 * 113.76663 * 319.04478 * 11 10 8 38 38 H 1.08999 * 113.74271 * 90.68477 * 12 11 10 39 39 H 1.09002 * 113.74135 * 221.87670 * 12 11 10 40 40 H 1.09002 * 109.46878 * 39.04479 * 15 13 10 41 41 H 1.08997 * 109.46802 * 159.04834 * 15 13 10 42 42 H 0.96997 * 120.00740 * 4.81508 * 16 15 13 43 43 H 1.09005 * 109.47262 * 299.99913 * 19 17 16 44 44 H 1.08996 * 109.47246 * 60.00209 * 19 17 16 45 45 H 0.96999 * 119.99821 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 1.6413 0.0573 -2.4766 6 7 1.9852 -0.3910 -3.7002 7 8 1.0109 1.0872 -2.3633 8 6 2.0324 -0.7105 1.2303 9 8 2.7297 -1.6965 1.1189 10 7 1.7069 -0.2502 2.4545 11 6 0.8327 0.8283 2.9551 12 6 1.7250 0.8311 4.2096 13 6 2.0812 -0.6195 3.8371 14 1 1.4231 -1.3629 4.2868 15 6 3.5645 -0.9537 4.0086 16 7 3.8080 -2.3313 3.5737 17 6 5.0299 -2.8795 3.7248 18 8 5.9277 -2.2326 4.2212 19 6 5.2807 -4.2964 3.2769 20 16 7.0035 -4.7392 3.6120 21 6 7.0168 -6.3946 3.0088 22 1 6.1181 -6.8248 2.5920 23 6 8.1824 -7.1460 3.0692 24 7 9.2776 -6.6219 3.5777 25 14 8.1963 -8.9012 2.4303 26 1 7.8408 -8.9060 0.9885 27 1 9.5513 -9.4821 2.6085 28 1 7.2077 -9.7111 3.1866 29 1 -0.3634 0.5137 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1263 -0.7993 -1.2057 33 1 1.6054 -1.7197 -1.2954 34 1 2.4897 -1.2145 -3.7909 35 1 1.7283 0.1098 -4.4901 36 1 -0.1923 0.5103 3.1457 37 1 0.8914 1.7476 2.3723 38 1 2.5675 1.5198 4.1474 39 1 1.1696 0.9226 5.1430 40 1 4.1628 -0.2710 3.4053 41 1 3.8414 -0.8496 5.0577 42 1 3.0900 -2.8488 3.1769 43 1 4.6201 -4.9717 3.8207 44 1 5.0852 -4.3795 2.2079 45 1 10.0922 -7.1468 3.6196 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001285833891.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:47:56 Heat of formation + Delta-G solvation = -85.086661 kcal Electronic energy + Delta-G solvation = -27546.955780 eV Core-core repulsion = 23498.653179 eV Total energy + Delta-G solvation = -4048.302601 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.99191 -39.92565 -38.80031 -38.04226 -34.66653 -34.04807 -34.01798 -32.36469 -30.51476 -29.74271 -28.13531 -27.54826 -25.41281 -24.56074 -23.40728 -21.96997 -20.52461 -20.16993 -19.06995 -17.99546 -17.69062 -17.43226 -16.69976 -16.61176 -16.10876 -15.99618 -15.73332 -15.14554 -14.86810 -14.74726 -14.61252 -14.14660 -13.85779 -13.77952 -13.50459 -13.10785 -13.03229 -12.69088 -12.67397 -12.56054 -12.33476 -12.30354 -11.88494 -11.59556 -11.55433 -11.42844 -11.28782 -10.99235 -10.97645 -10.70695 -10.29602 -10.07729 -9.77900 -9.74936 -9.23608 -9.02858 -9.00015 -8.68056 -8.14733 -6.41405 -6.15193 -3.84543 2.26632 2.32795 2.46375 3.13283 3.19396 3.27069 3.28752 3.31454 3.37980 3.79274 4.03564 4.09728 4.27141 4.29435 4.48260 4.63538 4.64959 4.69680 4.83026 4.91696 4.97605 4.99705 5.19460 5.22163 5.24634 5.31046 5.32257 5.38191 5.53116 5.59338 5.64234 5.71382 5.85028 5.91071 5.96492 6.05327 6.29995 6.38859 6.79039 6.91999 7.39758 7.65748 7.86673 7.88449 7.98209 8.41826 8.79705 9.29808 10.92285 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.010904 B = 0.002568 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2567.171330 B =10899.642809 C =12925.473708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.087 4.087 3 H 0.103 0.897 4 C -0.127 4.127 5 C 0.521 3.479 6 N -0.856 5.856 7 O -0.545 6.545 8 C 0.537 3.463 9 O -0.522 6.522 10 N -0.643 5.643 11 C 0.101 3.899 12 C -0.144 4.144 13 C 0.123 3.877 14 H 0.101 0.899 15 C 0.124 3.876 16 N -0.724 5.724 17 C 0.535 3.465 18 O -0.527 6.527 19 C -0.149 4.149 20 S -0.062 6.062 21 C -0.534 4.534 22 H 0.071 0.929 23 C 0.073 3.927 24 N -0.869 5.869 25 Si 0.918 3.082 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.060 0.940 30 H 0.085 0.915 31 H 0.054 0.946 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.404 0.596 35 H 0.401 0.599 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.066 0.934 41 H 0.081 0.919 42 H 0.401 0.599 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.062 16.574 -7.272 29.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.108 4.108 3 H 0.121 0.879 4 C -0.168 4.168 5 C 0.306 3.694 6 N -0.419 5.419 7 O -0.423 6.423 8 C 0.326 3.674 9 O -0.397 6.397 10 N -0.381 5.381 11 C -0.022 4.022 12 C -0.182 4.182 13 C 0.020 3.980 14 H 0.118 0.882 15 C -0.002 4.002 16 N -0.379 5.379 17 C 0.321 3.679 18 O -0.402 6.402 19 C -0.300 4.300 20 S 0.165 5.835 21 C -0.682 4.682 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.504 5.504 25 Si 0.745 3.255 26 H -0.200 1.200 27 H -0.209 1.209 28 H -0.200 1.200 29 H 0.079 0.921 30 H 0.104 0.896 31 H 0.073 0.927 32 H 0.124 0.876 33 H 0.121 0.879 34 H 0.233 0.767 35 H 0.231 0.769 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.117 0.883 39 H 0.109 0.891 40 H 0.084 0.916 41 H 0.099 0.901 42 H 0.236 0.764 43 H 0.105 0.895 44 H 0.108 0.892 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -21.330 17.643 -6.405 28.412 hybrid contribution -1.257 -2.362 -1.688 3.164 sum -22.586 15.280 -8.093 28.445 Atomic orbital electron populations 1.21943 0.92442 1.02373 1.03975 1.20902 0.98150 1.00807 0.90959 0.87909 1.21489 1.04344 1.00109 0.90833 1.20659 0.78180 0.85227 0.85322 1.43895 1.60021 1.29745 1.08259 1.90707 1.40042 1.24734 1.86815 1.20334 0.80037 0.83923 0.83082 1.90765 1.37869 1.25441 1.85669 1.50271 1.47265 1.36172 1.04397 1.23181 0.94990 0.90873 0.93160 1.23564 1.00549 0.95688 0.98440 1.23204 0.96459 0.97736 0.80573 0.88172 1.21370 0.93178 0.84755 1.00850 1.45836 1.13126 1.14004 1.64944 1.20222 0.81600 0.88476 0.77609 1.90679 1.43092 1.63233 1.43201 1.23489 1.07287 0.94929 1.04312 1.85328 1.01499 1.15458 1.81250 1.22843 0.99645 0.98636 1.47058 0.91046 1.24986 0.94614 0.98970 0.95053 1.70016 1.00805 1.37147 1.42466 0.86232 0.77360 0.82639 0.79301 1.19970 1.20853 1.19979 0.92119 0.89648 0.92689 0.87555 0.87906 0.76693 0.76853 0.89441 0.89662 0.88337 0.89093 0.91589 0.90099 0.76363 0.89540 0.89193 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 8.80 37.16 0.33 -0.79 16 2 C -0.09 -0.76 2.23 -91.77 -0.20 -0.96 16 3 H 0.10 0.92 7.95 -51.93 -0.41 0.50 16 4 C -0.13 -1.06 4.52 -27.88 -0.13 -1.19 16 5 C 0.52 4.42 7.82 -10.99 -0.09 4.34 16 6 N -0.86 -4.57 8.87 31.22 0.28 -4.29 16 7 O -0.55 -6.32 14.80 5.55 0.08 -6.24 16 8 C 0.54 5.81 7.27 -10.99 -0.08 5.73 16 9 O -0.52 -7.53 14.33 5.56 0.08 -7.45 16 10 N -0.64 -5.49 3.48 -170.10 -0.59 -6.08 16 11 C 0.10 0.48 6.67 -2.98 -0.02 0.46 16 12 C -0.14 -0.70 7.86 -25.80 -0.20 -0.91 16 13 C 0.12 1.00 4.28 -66.67 -0.29 0.72 16 14 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 15 C 0.12 1.53 5.34 -4.04 -0.02 1.51 16 16 N -0.72 -11.25 4.57 -60.29 -0.28 -11.52 16 17 C 0.53 11.01 7.85 -10.99 -0.09 10.92 16 18 O -0.53 -12.75 15.86 5.56 0.09 -12.66 16 19 C -0.15 -3.31 6.16 36.01 0.22 -3.09 16 20 S -0.06 -1.76 20.57 -107.50 -2.21 -3.98 16 21 C -0.53 -15.75 9.50 30.94 0.29 -15.45 16 22 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 23 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 24 N -0.87 -26.82 13.22 55.49 0.73 -26.08 16 25 Si 0.92 21.91 29.55 -169.99 -5.02 16.89 16 26 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 28 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 29 H 0.06 0.36 6.02 -51.93 -0.31 0.05 16 30 H 0.08 0.74 5.95 -51.93 -0.31 0.43 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.11 0.95 7.95 -51.93 -0.41 0.53 16 33 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.40 1.30 8.83 -40.82 -0.36 0.94 16 35 H 0.40 1.74 8.93 -40.82 -0.36 1.38 16 36 H 0.09 0.29 8.07 -51.93 -0.42 -0.13 16 37 H 0.09 0.34 8.13 -51.93 -0.42 -0.08 16 38 H 0.10 0.51 8.10 -51.93 -0.42 0.09 16 39 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.40 5.73 7.46 -40.82 -0.30 5.43 16 43 H 0.09 1.77 8.14 -51.91 -0.42 1.34 16 44 H 0.09 1.93 8.14 -51.92 -0.42 1.51 16 45 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 389.01 15.07 5.86 5.86 Total: -1.00 -39.87 389.01 -8.01 -47.88 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -6.66 Total: 4.34 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: -0.37 Total: 3.33 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: 0.14 Total: -47.98 kcal Atomic # 8 Polarization: -26.60 SS G_CDS: 0.25 Total: -26.35 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 16 Polarization: -1.76 SS G_CDS: -2.21 Total: -3.98 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -39.87 -8.01 -47.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285833891.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.208 kcal (2) G-P(sol) polarization free energy of solvation -39.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds