Wall clock time and date at job start Wed Apr 1 2020 01:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46868 * 2 1 4 4 C 1.53004 * 109.46794 * 240.00718 * 2 1 3 5 5 C 1.50697 * 109.47424 * 64.99967 * 4 2 1 6 6 N 1.34769 * 120.00253 * 179.97438 * 5 4 2 7 7 O 1.21287 * 120.00046 * 359.97438 * 5 4 2 8 8 C 1.50693 * 109.47319 * 120.00712 * 2 1 3 9 9 O 1.21283 * 120.00020 * 120.00477 * 8 2 1 10 10 N 1.34777 * 120.00002 * 299.99579 * 8 2 1 11 11 C 1.47581 * 134.49126 * 4.96633 * 10 8 2 12 12 C 1.53946 * 86.23909 * 204.68926 * 11 10 8 13 13 C 1.47928 * 134.63530 * 185.03888 * 10 8 2 14 14 H 1.08996 * 113.77126 * 269.61433 * 13 10 8 15 15 C 1.53011 * 113.86565 * 40.99131 * 13 10 8 16 16 N 1.46500 * 109.46885 * 279.04257 * 15 13 10 17 17 C 1.34776 * 119.99767 * 184.80701 * 16 15 13 18 18 O 1.21281 * 120.00061 * 0.02562 * 17 16 15 19 19 C 1.50699 * 120.00124 * 180.02562 * 17 16 15 20 20 S 1.81001 * 109.47421 * 180.02562 * 19 17 16 21 21 C 1.76197 * 100.00288 * 179.97438 * 20 19 17 22 22 H 1.08005 * 119.99729 * 359.97438 * 21 20 19 23 23 C 1.38802 * 120.00139 * 179.97438 * 21 20 19 24 24 N 1.31630 * 119.99786 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 119.99921 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46868 * 60.00511 * 25 23 21 27 27 H 1.48500 * 109.47242 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47310 * 300.00484 * 25 23 21 29 29 H 1.09001 * 109.47279 * 299.99206 * 1 2 3 30 30 H 1.08991 * 109.47335 * 59.99553 * 1 2 3 31 31 H 1.09002 * 109.46745 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46555 * 184.99561 * 4 2 1 33 33 H 1.09001 * 109.47437 * 304.99291 * 4 2 1 34 34 H 0.97002 * 120.00351 * 359.97438 * 6 5 4 35 35 H 0.97000 * 120.00371 * 179.97438 * 6 5 4 36 36 H 1.08999 * 113.77113 * 90.33279 * 11 10 8 37 37 H 1.09004 * 113.76663 * 319.04478 * 11 10 8 38 38 H 1.08999 * 113.74271 * 90.68477 * 12 11 10 39 39 H 1.09002 * 113.74135 * 221.87670 * 12 11 10 40 40 H 1.09002 * 109.46878 * 39.04479 * 15 13 10 41 41 H 1.08997 * 109.46802 * 159.04834 * 15 13 10 42 42 H 0.96997 * 120.00740 * 4.81508 * 16 15 13 43 43 H 1.09005 * 109.47262 * 299.99913 * 19 17 16 44 44 H 1.08996 * 109.47246 * 60.00209 * 19 17 16 45 45 H 0.96999 * 119.99821 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 1.6413 0.0573 -2.4766 6 7 1.9852 -0.3910 -3.7002 7 8 1.0109 1.0872 -2.3633 8 6 2.0324 -0.7105 1.2303 9 8 2.7297 -1.6965 1.1189 10 7 1.7069 -0.2502 2.4545 11 6 0.8327 0.8283 2.9551 12 6 1.7250 0.8311 4.2096 13 6 2.0812 -0.6195 3.8371 14 1 1.4231 -1.3629 4.2868 15 6 3.5645 -0.9537 4.0086 16 7 3.8080 -2.3313 3.5737 17 6 5.0299 -2.8795 3.7248 18 8 5.9277 -2.2326 4.2212 19 6 5.2807 -4.2964 3.2769 20 16 7.0035 -4.7392 3.6120 21 6 7.0168 -6.3946 3.0088 22 1 6.1181 -6.8248 2.5920 23 6 8.1824 -7.1460 3.0692 24 7 9.2776 -6.6219 3.5777 25 14 8.1963 -8.9012 2.4303 26 1 7.8408 -8.9060 0.9885 27 1 9.5513 -9.4821 2.6085 28 1 7.2077 -9.7111 3.1866 29 1 -0.3634 0.5137 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1263 -0.7993 -1.2057 33 1 1.6054 -1.7197 -1.2954 34 1 2.4897 -1.2145 -3.7909 35 1 1.7283 0.1098 -4.4901 36 1 -0.1923 0.5103 3.1457 37 1 0.8914 1.7476 2.3723 38 1 2.5675 1.5198 4.1474 39 1 1.1696 0.9226 5.1430 40 1 4.1628 -0.2710 3.4053 41 1 3.8414 -0.8496 5.0577 42 1 3.0900 -2.8488 3.1769 43 1 4.6201 -4.9717 3.8207 44 1 5.0852 -4.3795 2.2079 45 1 10.0922 -7.1468 3.6196 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001285833891.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:47:55 Heat of formation + Delta-G solvation = -117.593885 kcal Electronic energy + Delta-G solvation = -27548.365399 eV Core-core repulsion = 23498.653179 eV Total energy + Delta-G solvation = -4049.712220 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.71886 -40.70750 -40.24715 -38.83452 -35.73458 -35.05914 -34.66104 -34.59594 -31.70975 -30.76950 -28.84223 -28.61023 -27.63555 -25.22614 -24.20478 -22.57970 -21.72948 -21.12282 -20.00234 -19.62902 -18.55679 -18.05876 -17.81336 -17.51824 -17.45666 -16.89396 -16.85287 -16.58928 -16.33930 -16.04826 -15.70107 -15.37199 -14.92568 -14.65483 -14.57400 -14.43684 -14.21120 -13.84386 -13.72446 -13.29414 -13.20623 -13.18231 -13.05571 -12.96584 -12.86817 -12.65331 -12.32419 -12.22196 -12.10082 -11.93277 -11.72672 -11.13993 -11.04049 -10.93870 -10.68845 -10.51568 -10.31065 -10.08602 -9.69755 -8.68483 -8.35356 -6.14122 1.25260 1.43317 1.44828 1.54928 1.59516 1.61916 1.63723 1.74245 2.26272 2.34406 2.62928 2.98150 3.30274 3.40324 3.54272 3.67612 3.76609 3.95010 3.99757 4.05434 4.11448 4.21537 4.25327 4.33199 4.41752 4.47567 4.48601 4.62929 4.68969 4.71392 4.76149 4.93447 4.96109 5.03419 5.09689 5.30783 5.33336 5.39873 5.45587 5.89580 6.18634 6.40394 6.48782 6.71899 7.05043 7.14415 7.25511 7.30912 8.73930 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.010904 B = 0.002568 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2567.171330 B =10899.642809 C =12925.473708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.082 4.082 3 H 0.100 0.900 4 C -0.125 4.125 5 C 0.521 3.479 6 N -0.840 5.840 7 O -0.578 6.578 8 C 0.530 3.470 9 O -0.569 6.569 10 N -0.647 5.647 11 C 0.103 3.897 12 C -0.129 4.129 13 C 0.120 3.880 14 H 0.120 0.880 15 C 0.120 3.880 16 N -0.701 5.701 17 C 0.534 3.466 18 O -0.570 6.570 19 C -0.126 4.126 20 S -0.146 6.146 21 C -0.549 4.549 22 H 0.080 0.920 23 C 0.013 3.987 24 N -0.911 5.911 25 Si 1.001 2.999 26 H -0.262 1.262 27 H -0.276 1.276 28 H -0.261 1.261 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.416 0.584 35 H 0.408 0.592 36 H 0.114 0.886 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.121 0.879 40 H 0.045 0.955 41 H 0.084 0.916 42 H 0.410 0.590 43 H 0.106 0.894 44 H 0.097 0.903 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.867 16.326 -7.573 31.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.104 4.104 3 H 0.118 0.882 4 C -0.165 4.165 5 C 0.307 3.693 6 N -0.404 5.404 7 O -0.459 6.459 8 C 0.321 3.679 9 O -0.448 6.448 10 N -0.384 5.384 11 C -0.018 4.018 12 C -0.167 4.167 13 C 0.017 3.983 14 H 0.137 0.863 15 C -0.004 4.004 16 N -0.354 5.354 17 C 0.320 3.680 18 O -0.449 6.449 19 C -0.277 4.277 20 S 0.081 5.919 21 C -0.697 4.697 22 H 0.098 0.902 23 C -0.191 4.191 24 N -0.547 5.547 25 Si 0.822 3.178 26 H -0.187 1.187 27 H -0.201 1.201 28 H -0.186 1.186 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.115 0.885 33 H 0.126 0.874 34 H 0.247 0.753 35 H 0.240 0.760 36 H 0.132 0.868 37 H 0.115 0.885 38 H 0.112 0.888 39 H 0.139 0.861 40 H 0.063 0.937 41 H 0.102 0.898 42 H 0.247 0.753 43 H 0.124 0.876 44 H 0.115 0.885 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -24.203 17.425 -6.720 30.571 hybrid contribution -0.455 -2.176 -1.590 2.733 sum -24.657 15.249 -8.310 30.159 Atomic orbital electron populations 1.21858 0.91195 1.02430 1.04277 1.20870 0.99045 1.00223 0.90238 0.88223 1.21449 1.03723 1.00373 0.90958 1.20663 0.77861 0.84755 0.86067 1.43776 1.59036 1.29970 1.07621 1.90692 1.41773 1.26096 1.87333 1.20681 0.79536 0.83489 0.84235 1.90730 1.40048 1.27527 1.86485 1.50466 1.47363 1.36679 1.03845 1.23486 0.95634 0.90184 0.92536 1.23543 1.00579 0.92613 0.99952 1.23388 0.93417 1.00546 0.80946 0.86263 1.21594 0.96300 0.82122 1.00382 1.45681 1.11378 1.15217 1.63078 1.19984 0.82700 0.87793 0.77554 1.90661 1.44765 1.63946 1.45577 1.23318 1.02754 0.96630 1.05014 1.85472 1.07776 1.16685 1.81979 1.23167 1.00429 0.98628 1.47474 0.90203 1.26158 0.93862 1.04244 0.94866 1.70180 1.01646 1.39301 1.43612 0.84978 0.77887 0.75912 0.79039 1.18708 1.20103 1.18582 0.90337 0.90755 0.92680 0.88520 0.87404 0.75328 0.76014 0.86818 0.88540 0.88810 0.86054 0.93687 0.89817 0.75304 0.87551 0.88468 0.91899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 8.80 71.98 0.63 -1.24 16 2 C -0.08 -1.38 2.23 -11.54 -0.03 -1.40 16 3 H 0.10 1.73 7.95 -2.39 -0.02 1.71 16 4 C -0.12 -2.06 4.52 29.85 0.13 -1.92 16 5 C 0.52 8.63 7.82 87.66 0.69 9.31 16 6 N -0.84 -8.24 8.87 -173.54 -1.54 -9.78 16 7 O -0.58 -13.22 14.80 -3.05 -0.05 -13.26 16 8 C 0.53 11.04 7.27 87.65 0.64 11.68 16 9 O -0.57 -16.39 14.33 -3.04 -0.04 -16.44 16 10 N -0.65 -9.71 3.48 -810.48 -2.82 -12.54 16 11 C 0.10 0.61 6.67 86.48 0.58 1.19 16 12 C -0.13 -0.82 7.86 31.25 0.25 -0.57 16 13 C 0.12 1.67 4.28 45.03 0.19 1.86 16 14 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 15 C 0.12 2.91 5.34 86.38 0.46 3.37 16 16 N -0.70 -21.49 4.57 -463.05 -2.11 -23.61 16 17 C 0.53 22.32 7.85 87.66 0.69 23.01 16 18 O -0.57 -28.55 15.86 -3.03 -0.05 -28.60 16 19 C -0.13 -5.63 6.16 71.24 0.44 -5.19 16 20 S -0.15 -8.59 20.57 -56.49 -1.16 -9.76 16 21 C -0.55 -32.78 9.50 67.95 0.65 -32.13 16 22 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 23 C 0.01 0.79 5.49 84.86 0.47 1.25 16 24 N -0.91 -57.33 13.22 21.65 0.29 -57.04 16 25 Si 1.00 44.72 29.55 68.60 2.03 46.74 16 26 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 27 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 28 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 29 H 0.08 0.73 6.02 -2.39 -0.01 0.71 16 30 H 0.07 1.21 5.95 -2.39 -0.01 1.20 16 31 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.10 1.78 7.95 -2.39 -0.02 1.76 16 33 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.42 2.25 8.83 -92.71 -0.82 1.43 16 35 H 0.41 3.13 8.93 -92.71 -0.83 2.30 16 36 H 0.11 0.18 8.07 -2.39 -0.02 0.16 16 37 H 0.10 0.43 8.13 -2.38 -0.02 0.41 16 38 H 0.09 0.74 8.10 -2.39 -0.02 0.72 16 39 H 0.12 0.14 8.14 -2.39 -0.02 0.12 16 40 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.41 11.32 7.46 -92.71 -0.69 10.62 16 43 H 0.11 4.29 8.14 -2.39 -0.02 4.27 16 44 H 0.10 4.19 8.14 -2.40 -0.02 4.17 16 45 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 Total: -1.00 -90.13 389.01 -0.97 -91.10 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: -1.29 Total: 23.96 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: 5.78 Total: 9.21 kcal Atomic # 7 Polarization: -96.77 SS G_CDS: -6.19 Total: -102.96 kcal Atomic # 8 Polarization: -58.16 SS G_CDS: -0.14 Total: -58.30 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.16 Total: -9.76 kcal Total: -90.13 -0.97 -91.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285833891.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.490 kcal (2) G-P(sol) polarization free energy of solvation -90.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds