Wall clock time and date at job start Wed Apr 1 2020 02:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21282 * 119.99944 * 2 1 4 4 N 1.34783 * 119.99838 * 180.02562 * 2 1 3 5 5 C 1.46502 * 119.99822 * 179.97438 * 4 2 1 6 6 H 1.09000 * 109.47094 * 324.99746 * 5 4 2 7 7 C 1.53000 * 109.46978 * 84.99828 * 5 4 2 8 8 C 1.50698 * 109.47089 * 204.99650 * 5 4 2 9 9 O 1.21279 * 119.99783 * 0.02562 * 8 5 4 10 10 N 1.34771 * 119.99907 * 180.02562 * 8 5 4 11 11 C 1.46505 * 119.99611 * 180.02562 * 10 8 5 12 12 C 1.53009 * 109.46831 * 174.96827 * 11 10 8 13 13 N 1.46495 * 115.54715 * 85.77478 * 12 11 10 14 14 C 1.34779 * 120.00375 * 65.40694 * 13 12 11 15 15 O 1.21283 * 119.99626 * 354.97760 * 14 13 12 16 16 C 1.50700 * 120.00262 * 174.97499 * 14 13 12 17 17 S 1.81006 * 109.46951 * 180.02562 * 16 14 13 18 18 C 1.76199 * 99.99857 * 180.02562 * 17 16 14 19 19 H 1.08003 * 119.99846 * 359.97438 * 18 17 16 20 20 C 1.38795 * 120.00231 * 180.02562 * 18 17 16 21 21 N 1.31634 * 119.99666 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00450 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46982 * 59.99762 * 22 20 18 24 24 H 1.48491 * 109.47305 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.46901 * 299.99969 * 22 20 18 26 26 C 1.52993 * 117.49722 * 231.44326 * 12 11 10 27 27 C 1.52999 * 117.50049 * 300.10669 * 12 11 10 28 28 H 1.08991 * 109.47164 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46651 * 299.99632 * 1 2 3 30 30 H 1.09001 * 109.46829 * 59.99380 * 1 2 3 31 31 H 0.96991 * 120.00050 * 359.97438 * 4 2 1 32 32 H 1.09002 * 109.46924 * 299.99823 * 7 5 4 33 33 H 1.09000 * 109.47275 * 60.00029 * 7 5 4 34 34 H 1.08996 * 109.47011 * 179.97438 * 7 5 4 35 35 H 0.96999 * 120.00486 * 359.97438 * 10 8 5 36 36 H 1.08998 * 109.47545 * 54.97056 * 11 10 8 37 37 H 1.08996 * 109.46839 * 294.96726 * 11 10 8 38 38 H 0.97002 * 119.99938 * 245.40447 * 13 12 11 39 39 H 1.08999 * 109.47302 * 300.00003 * 16 14 13 40 40 H 1.08998 * 109.46945 * 60.00407 * 16 14 13 41 41 H 0.97004 * 119.99765 * 180.02562 * 21 20 18 42 42 H 1.09005 * 117.49813 * 215.00448 * 26 12 11 43 43 H 1.08997 * 117.50305 * 0.02987 * 26 12 11 44 44 H 1.09001 * 117.49664 * 359.97031 * 27 12 11 45 45 H 1.08992 * 117.50319 * 144.97561 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 3.6459 -1.1673 -0.0011 6 1 4.0090 -0.3253 -0.5905 7 6 4.1565 -1.0418 1.4358 8 6 4.1480 -2.4549 -0.6019 9 8 3.3597 -3.2900 -0.9918 10 7 5.4730 -2.6782 -0.7061 11 6 5.9611 -3.9298 -1.2908 12 6 7.4859 -3.8782 -1.4061 13 7 8.2242 -4.2885 -0.2091 14 6 8.1519 -5.5629 0.2235 15 8 7.4056 -6.3473 -0.3228 16 6 8.9985 -6.0131 1.3862 17 16 8.6787 -7.7625 1.7235 18 6 9.7664 -8.0150 3.0866 19 1 10.3696 -7.1982 3.4546 20 6 9.8487 -9.2638 3.6867 21 7 9.1139 -10.2594 3.2378 22 14 11.0023 -9.5317 5.1313 23 1 10.6223 -8.6237 6.2432 24 1 10.9042 -10.9411 5.5883 25 1 12.3971 -9.2429 4.7111 26 6 8.1032 -4.2115 -2.7657 27 6 8.0924 -2.7655 -2.2634 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6960 -2.0072 -0.0005 32 1 3.7933 -0.1105 1.8703 33 1 3.7934 -1.8837 2.0252 34 1 5.2464 -1.0423 1.4354 35 1 6.1035 -2.0101 -0.3947 36 1 5.5261 -4.0620 -2.2814 37 1 5.6729 -4.7653 -0.6529 38 1 8.7652 -3.6429 0.2720 39 1 10.0522 -5.8772 1.1426 40 1 8.7499 -5.4215 2.2672 41 1 9.1711 -11.1321 3.6575 42 1 9.0587 -4.7360 -2.7697 43 1 7.4230 -4.4670 -3.5782 44 1 7.4050 -2.0705 -2.7457 45 1 9.0405 -2.3385 -1.9368 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001285906657.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:08:11 Heat of formation + Delta-G solvation = -87.423521 kcal Electronic energy + Delta-G solvation = -27042.886723 eV Core-core repulsion = 22994.482788 eV Total energy + Delta-G solvation = -4048.403935 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.77342 -39.94107 -39.16522 -37.43748 -35.31272 -34.54649 -32.84012 -32.46086 -31.90078 -29.36444 -29.07785 -27.35214 -25.52231 -24.50709 -22.95102 -21.54678 -20.99680 -20.57130 -19.78340 -18.23477 -17.90073 -17.23596 -16.63089 -16.34029 -16.32921 -15.87035 -15.47781 -15.26338 -14.98794 -14.83716 -14.59456 -14.18611 -14.03558 -13.92846 -13.42329 -13.35690 -13.05614 -12.89337 -12.78906 -12.65276 -12.50958 -12.43787 -12.06635 -11.95984 -11.82851 -11.12362 -11.08295 -11.06386 -10.82494 -10.67270 -10.31819 -10.15964 -9.86615 -9.57024 -9.55324 -9.23909 -9.10262 -9.02218 -8.28801 -6.54314 -6.24922 -3.96111 2.20578 2.27555 2.47543 2.83106 2.95424 3.02961 3.20803 3.23051 3.26655 3.49022 3.59937 4.16909 4.21649 4.25035 4.46561 4.55293 4.63768 4.65784 4.72023 4.82657 5.01205 5.03064 5.10194 5.14651 5.27327 5.28993 5.35227 5.42017 5.45672 5.62749 5.65564 5.73279 5.80132 5.82306 5.85636 5.95783 6.06582 6.07511 6.54736 7.10609 7.12453 7.55210 7.57468 7.80440 7.84697 8.31294 8.51310 9.20209 10.82341 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.013759 B = 0.002142 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.527805 B =13066.951287 C =14208.261378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.515 3.485 3 O -0.551 6.551 4 N -0.713 5.713 5 C 0.124 3.876 6 H 0.114 0.886 7 C -0.160 4.160 8 C 0.510 3.490 9 O -0.533 6.533 10 N -0.718 5.718 11 C 0.149 3.851 12 C 0.088 3.912 13 N -0.710 5.710 14 C 0.535 3.465 15 O -0.505 6.505 16 C -0.153 4.153 17 S -0.057 6.057 18 C -0.537 4.537 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C -0.157 4.157 27 C -0.170 4.170 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.412 0.588 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.401 0.599 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.401 0.599 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.269 0.731 42 H 0.104 0.896 43 H 0.104 0.896 44 H 0.105 0.895 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.041 22.352 -8.719 25.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.302 3.698 3 O -0.428 6.428 4 N -0.368 5.368 5 C 0.015 3.985 6 H 0.132 0.868 7 C -0.219 4.219 8 C 0.295 3.705 9 O -0.410 6.410 10 N -0.370 5.370 11 C 0.025 3.975 12 C 0.000 4.000 13 N -0.365 5.365 14 C 0.321 3.679 15 O -0.378 6.378 16 C -0.304 4.304 17 S 0.169 5.831 18 C -0.686 4.686 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.196 4.196 27 C -0.208 4.208 28 H 0.097 0.903 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.249 0.751 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.236 0.764 36 H 0.099 0.901 37 H 0.110 0.890 38 H 0.235 0.765 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.079 0.921 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.124 0.876 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -10.474 20.932 -9.898 25.413 hybrid contribution 2.104 0.856 1.983 3.015 sum -8.370 21.788 -7.915 24.646 Atomic orbital electron populations 1.21836 0.91148 1.04581 1.05393 1.20861 0.90793 0.83084 0.75018 1.90722 1.70724 1.31364 1.50035 1.45940 1.05722 1.09885 1.75211 1.20754 0.82428 0.96673 0.98597 0.86848 1.22140 1.01714 1.03741 0.94276 1.20551 0.82753 0.88377 0.78867 1.90733 1.55126 1.46460 1.48662 1.45918 1.06594 1.21133 1.63346 1.21137 0.89738 0.86431 1.00157 1.20634 0.90379 1.04158 0.84855 1.45441 1.51265 1.11435 1.28352 1.20373 0.82366 0.80877 0.84253 1.90715 1.37594 1.52594 1.56872 1.23538 1.01712 1.07189 0.97968 1.85430 1.57183 0.98295 1.42144 1.22817 1.28179 0.99274 1.18286 0.90989 1.24994 0.96092 0.94930 0.97556 1.70007 1.38053 1.01842 1.40300 0.86222 0.80486 0.77465 0.81316 1.19938 1.20789 1.19934 1.23370 1.03346 0.97027 0.95852 1.23341 1.02873 0.92290 1.02279 0.90288 0.88561 0.88566 0.75080 0.90693 0.91435 0.90893 0.76409 0.90094 0.89040 0.76453 0.89181 0.89276 0.92084 0.87769 0.87743 0.87646 0.87848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.86 10.39 36.01 0.37 -0.49 16 2 C 0.51 4.58 7.90 -10.98 -0.09 4.50 16 3 O -0.55 -6.90 16.76 5.56 0.09 -6.81 16 4 N -0.71 -6.04 4.95 -54.93 -0.27 -6.31 16 5 C 0.12 1.05 2.98 -69.08 -0.21 0.85 16 6 H 0.11 0.94 7.58 -51.93 -0.39 0.54 16 7 C -0.16 -1.19 9.38 37.16 0.35 -0.84 16 8 C 0.51 5.34 7.22 -10.99 -0.08 5.26 16 9 O -0.53 -7.55 15.83 5.56 0.09 -7.47 16 10 N -0.72 -6.41 5.34 -60.29 -0.32 -6.73 16 11 C 0.15 1.73 5.63 -4.03 -0.02 1.70 16 12 C 0.09 0.90 1.79 -131.82 -0.24 0.66 16 13 N -0.71 -8.22 5.45 -47.61 -0.26 -8.48 16 14 C 0.53 9.21 7.66 -10.98 -0.08 9.12 16 15 O -0.51 -10.75 14.64 5.56 0.08 -10.67 16 16 C -0.15 -2.93 6.16 36.01 0.22 -2.71 16 17 S -0.06 -1.51 20.57 -107.50 -2.21 -3.72 16 18 C -0.54 -15.03 9.50 30.94 0.29 -14.74 16 19 H 0.07 1.90 7.80 -52.48 -0.41 1.49 16 20 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 21 N -0.87 -25.88 13.22 55.49 0.73 -25.15 16 22 Si 0.92 21.13 29.55 -169.99 -5.02 16.11 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 26 C -0.16 -1.49 10.11 -26.69 -0.27 -1.76 16 27 C -0.17 -1.15 9.95 -26.69 -0.27 -1.42 16 28 H 0.08 0.27 7.91 -51.93 -0.41 -0.14 16 29 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.41 3.27 7.63 -40.82 -0.31 2.96 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.42 7.56 -51.93 -0.39 0.02 16 35 H 0.40 2.48 7.79 -40.82 -0.32 2.17 16 36 H 0.08 0.95 7.89 -51.93 -0.41 0.54 16 37 H 0.09 1.44 6.83 -51.93 -0.35 1.08 16 38 H 0.40 3.40 8.83 -40.82 -0.36 3.04 16 39 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 40 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 41 H 0.27 7.49 8.31 -40.82 -0.34 7.16 16 42 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.10 0.93 8.05 -51.93 -0.42 0.51 16 44 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 401.28 15.07 6.05 6.05 Total: -1.00 -37.71 401.28 -7.87 -45.58 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -6.72 Total: 5.47 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -0.11 Total: 2.12 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: -0.12 Total: -46.67 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: 0.26 Total: -24.94 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.21 Total: -3.72 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -37.71 -7.87 -45.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285906657.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.841 kcal (2) G-P(sol) polarization free energy of solvation -37.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds