Wall clock time and date at job start Wed Apr 1 2020 02:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21272 * 120.00131 * 2 1 4 4 N 1.34776 * 119.99620 * 180.02562 * 2 1 3 5 5 C 1.46502 * 120.00083 * 180.27434 * 4 2 1 6 6 H 1.09004 * 109.46898 * 324.72806 * 5 4 2 7 7 C 1.53000 * 109.46776 * 84.72389 * 5 4 2 8 8 C 1.50699 * 109.47406 * 204.72354 * 5 4 2 9 9 O 1.21277 * 120.00019 * 332.99925 * 8 5 4 10 10 N 1.34776 * 119.99757 * 152.99376 * 8 5 4 11 11 C 1.47421 * 125.64911 * 4.64944 * 10 8 5 12 12 C 1.55137 * 104.72181 * 155.81577 * 11 10 8 13 13 C 1.55153 * 101.48256 * 37.29631 * 12 11 10 14 14 H 1.08999 * 110.72127 * 82.69997 * 13 12 11 15 15 N 1.46499 * 110.86991 * 205.89650 * 13 12 11 16 16 C 1.34781 * 120.00226 * 268.61158 * 15 13 12 17 17 O 1.21276 * 119.99922 * 0.02562 * 16 15 13 18 18 C 1.50697 * 119.99906 * 179.97438 * 16 15 13 19 19 S 1.81004 * 109.46994 * 180.02562 * 18 16 15 20 20 C 1.76200 * 99.99861 * 179.97438 * 19 18 16 21 21 H 1.08000 * 120.00107 * 359.97438 * 20 19 18 22 22 C 1.38800 * 119.99882 * 179.97438 * 20 19 18 23 23 N 1.31636 * 119.99794 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00133 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47277 * 60.00288 * 24 22 20 26 26 H 1.48506 * 109.47324 * 180.02562 * 24 22 20 27 27 H 1.48493 * 109.47610 * 300.00169 * 24 22 20 28 28 C 1.47025 * 125.64816 * 184.95513 * 10 8 5 29 29 H 1.08998 * 109.46927 * 269.99873 * 1 2 3 30 30 H 1.09001 * 109.46976 * 30.00042 * 1 2 3 31 31 H 1.08999 * 109.47410 * 149.99881 * 1 2 3 32 32 H 0.96999 * 120.00097 * 359.97438 * 4 2 1 33 33 H 1.09000 * 109.47247 * 57.65056 * 7 5 4 34 34 H 1.09001 * 109.47235 * 177.64964 * 7 5 4 35 35 H 1.08997 * 109.47326 * 297.64483 * 7 5 4 36 36 H 1.08998 * 110.36763 * 274.74436 * 11 10 8 37 37 H 1.08999 * 110.36820 * 37.06834 * 11 10 8 38 38 H 1.08998 * 111.18991 * 279.18727 * 12 11 10 39 39 H 1.08997 * 110.93444 * 155.28711 * 12 11 10 40 40 H 0.97008 * 119.99907 * 88.60970 * 15 13 12 41 41 H 1.09004 * 109.47402 * 299.99770 * 18 16 15 42 42 H 1.09003 * 109.47618 * 60.00133 * 18 16 15 43 43 H 0.97007 * 119.99811 * 179.97438 * 23 22 20 44 44 H 1.09001 * 109.87965 * 300.44528 * 28 10 8 45 45 H 1.09002 * 109.87817 * 61.45095 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6458 -1.1674 0.0056 6 1 4.0117 -0.3267 -0.5840 7 6 4.1498 -1.0388 1.4444 8 6 4.1506 -2.4563 -0.5902 9 8 3.4702 -3.4585 -0.5324 10 7 5.3582 -2.4951 -1.1875 11 6 6.3250 -1.3837 -1.2438 12 6 7.7025 -2.0691 -1.4425 13 6 7.3307 -3.2411 -2.3887 14 1 7.2928 -2.9035 -3.4244 15 7 8.2759 -4.3507 -2.2416 16 6 9.3681 -4.4144 -3.0288 17 8 9.5686 -3.5530 -3.8586 18 6 10.3407 -5.5555 -2.8771 19 16 11.6913 -5.3591 -4.0659 20 6 12.6501 -6.7857 -3.6781 21 1 12.3252 -7.4592 -2.8988 22 6 13.8229 -7.0438 -4.3740 23 7 14.2192 -6.2226 -5.3234 24 14 14.8397 -8.5558 -3.9624 25 1 14.0206 -9.7761 -4.1748 26 1 16.0356 -8.6025 -4.8417 27 1 15.2718 -8.4905 -2.5432 28 6 5.9268 -3.6510 -1.8962 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3634 -0.8899 -0.5138 32 1 1.6958 -2.0073 -0.0005 33 1 3.7499 -1.8566 2.0439 34 1 5.2390 -1.0809 1.4531 35 1 3.8197 -0.0874 1.8614 36 1 6.1004 -0.7276 -2.0847 37 1 6.3124 -0.8222 -0.3096 38 1 8.0978 -2.4405 -0.4970 39 1 8.4098 -1.3909 -1.9198 40 1 8.1158 -5.0395 -1.5776 41 1 10.7453 -5.5559 -1.8649 42 1 9.8265 -6.4985 -3.0632 43 1 15.0391 -6.4029 -5.8096 44 1 6.0053 -4.5001 -1.2174 45 1 5.2952 -3.9125 -2.7453 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001293532139.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:05:35 Heat of formation + Delta-G solvation = -107.581568 kcal Electronic energy + Delta-G solvation = -26804.639844 eV Core-core repulsion = 22755.361791 eV Total energy + Delta-G solvation = -4049.278053 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.05846 -39.97003 -39.20720 -37.68174 -35.44196 -34.30605 -32.46117 -32.20130 -31.11129 -29.75760 -29.36110 -28.17028 -25.55729 -25.19075 -23.34927 -21.71277 -20.93150 -20.59729 -19.91705 -18.21758 -17.89319 -17.23793 -16.81926 -16.74855 -16.23848 -15.85795 -15.49726 -15.19863 -14.97596 -14.83299 -14.71477 -14.18077 -13.98593 -13.81223 -13.52136 -13.32195 -13.28258 -13.12789 -12.85161 -12.70960 -12.60753 -12.53097 -12.40480 -12.15508 -12.07015 -11.73496 -11.22979 -11.08014 -11.06221 -10.79999 -10.44487 -10.35735 -9.86615 -9.69325 -9.54068 -9.21768 -9.09896 -9.02864 -8.29402 -6.54500 -6.24948 -3.96143 1.92842 2.15986 2.20520 2.80584 2.94560 3.00365 3.21389 3.25404 3.28280 3.62005 3.77175 4.14513 4.17324 4.27059 4.36563 4.52608 4.58173 4.73016 4.75154 4.79816 4.86414 4.90889 5.00498 5.06611 5.10381 5.12647 5.21966 5.34251 5.35941 5.45038 5.55364 5.60773 5.63931 5.73859 5.81732 5.83554 5.87176 6.07882 6.46107 6.91127 6.98343 7.51993 7.55378 7.56787 7.70889 8.31592 8.47258 9.20411 10.82365 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.039427 B = 0.001627 C = 0.001607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.000353 B =17200.870766 C =17418.086980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.514 3.486 3 O -0.546 6.546 4 N -0.717 5.717 5 C 0.128 3.872 6 H 0.110 0.890 7 C -0.158 4.158 8 C 0.530 3.470 9 O -0.535 6.535 10 N -0.611 5.611 11 C 0.093 3.907 12 C -0.145 4.145 13 C 0.137 3.863 14 H 0.109 0.891 15 N -0.731 5.731 16 C 0.536 3.464 17 O -0.514 6.514 18 C -0.154 4.154 19 S -0.059 6.059 20 C -0.538 4.538 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 C 0.103 3.897 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.411 0.589 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.400 0.600 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.269 0.731 44 H 0.077 0.923 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.275 10.020 13.727 30.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.302 3.698 3 O -0.423 6.423 4 N -0.372 5.372 5 C 0.020 3.980 6 H 0.128 0.872 7 C -0.217 4.217 8 C 0.317 3.683 9 O -0.412 6.412 10 N -0.346 5.346 11 C -0.030 4.030 12 C -0.184 4.184 13 C 0.031 3.969 14 H 0.127 0.873 15 N -0.385 5.385 16 C 0.323 3.677 17 O -0.387 6.387 18 C -0.305 4.305 19 S 0.168 5.832 20 C -0.686 4.686 21 H 0.091 0.909 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 C -0.020 4.020 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.101 0.899 32 H 0.248 0.752 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.115 0.885 40 H 0.235 0.765 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.079 0.921 44 H 0.095 0.905 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -24.802 11.712 12.236 30.033 hybrid contribution 0.204 -2.761 1.545 3.170 sum -24.598 8.951 13.781 29.582 Atomic orbital electron populations 1.21879 0.91008 1.05199 1.05035 1.20885 0.90817 0.83049 0.75052 1.90736 1.70740 1.31306 1.49492 1.45949 1.05622 1.09917 1.75749 1.20728 0.82241 0.96292 0.98762 0.87170 1.22106 1.01882 1.03775 0.93911 1.20237 0.80104 0.90272 0.77692 1.90716 1.56191 1.35898 1.58391 1.48336 1.16628 1.15195 1.54435 1.22591 0.87895 0.89569 1.02908 1.23299 0.95975 0.98121 1.01024 1.21823 0.86726 0.87261 1.01126 0.87290 1.45962 1.24531 1.27441 1.40587 1.20349 0.80796 0.86800 0.79803 1.90708 1.73878 1.39877 1.34247 1.23540 1.01342 0.98724 1.06879 1.85392 1.18841 1.35076 1.43894 1.22826 1.10662 1.10789 1.24301 0.90944 1.24987 0.96642 0.97393 0.94478 1.70007 1.22969 1.36041 1.21234 0.86222 0.79086 0.81722 0.78459 1.19928 1.20785 1.19938 1.22151 0.93900 0.88999 0.96984 0.88595 0.88589 0.89933 0.75191 0.91420 0.90850 0.90492 0.90208 0.89774 0.89834 0.88546 0.76497 0.89100 0.89081 0.92091 0.90472 0.90207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.66 10.30 36.01 0.37 -0.29 16 2 C 0.51 4.00 7.90 -10.98 -0.09 3.91 16 3 O -0.55 -6.38 16.76 5.56 0.09 -6.29 16 4 N -0.72 -5.13 5.06 -54.93 -0.28 -5.41 16 5 C 0.13 0.98 2.28 -69.08 -0.16 0.83 16 6 H 0.11 0.88 6.94 -51.93 -0.36 0.51 16 7 C -0.16 -1.02 9.39 37.16 0.35 -0.67 16 8 C 0.53 4.93 7.04 -10.99 -0.08 4.86 16 9 O -0.54 -6.47 16.37 5.56 0.09 -6.38 16 10 N -0.61 -5.10 3.32 -170.38 -0.57 -5.67 16 11 C 0.09 0.62 6.27 -2.41 -0.02 0.60 16 12 C -0.14 -1.19 6.79 -24.46 -0.17 -1.36 16 13 C 0.14 1.36 3.31 -66.10 -0.22 1.14 16 14 H 0.11 1.26 7.55 -51.93 -0.39 0.87 16 15 N -0.73 -8.48 5.18 -52.04 -0.27 -8.75 16 16 C 0.54 9.11 7.85 -10.99 -0.09 9.03 16 17 O -0.51 -10.74 15.51 5.56 0.09 -10.65 16 18 C -0.15 -2.93 6.16 36.00 0.22 -2.71 16 19 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 20 C -0.54 -15.00 9.50 30.94 0.29 -14.71 16 21 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 22 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -25.76 13.22 55.49 0.73 -25.02 16 24 Si 0.92 21.08 29.55 -169.99 -5.02 16.05 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 27 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 28 C 0.10 0.91 6.62 -3.07 -0.02 0.89 16 29 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.41 2.56 7.81 -40.82 -0.32 2.24 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.39 6.99 -51.93 -0.36 0.03 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.42 6.57 -51.93 -0.34 0.08 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.40 3.60 8.37 -40.82 -0.34 3.26 16 41 H 0.09 1.59 8.14 -51.91 -0.42 1.16 16 42 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 43 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 44 H 0.08 0.67 7.72 -51.93 -0.40 0.27 16 45 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 393.39 15.07 5.93 5.93 Total: -1.00 -37.13 393.39 -7.82 -44.95 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -6.71 Total: 1.49 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: 0.31 Total: 3.50 kcal Atomic # 7 Polarization: -44.47 SS G_CDS: -0.38 Total: -44.85 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: 0.27 Total: -23.32 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -37.13 -7.82 -44.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001293532139.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.632 kcal (2) G-P(sol) polarization free energy of solvation -37.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds