Wall clock time and date at job start Wed Apr 1 2020 02:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21272 * 120.00131 * 2 1 4 4 N 1.34776 * 119.99620 * 180.02562 * 2 1 3 5 5 C 1.46502 * 120.00083 * 180.27434 * 4 2 1 6 6 H 1.09004 * 109.46898 * 324.72806 * 5 4 2 7 7 C 1.53000 * 109.46776 * 84.72389 * 5 4 2 8 8 C 1.50699 * 109.47406 * 204.72354 * 5 4 2 9 9 O 1.21277 * 120.00019 * 332.99925 * 8 5 4 10 10 N 1.34776 * 119.99757 * 152.99376 * 8 5 4 11 11 C 1.47421 * 125.64911 * 4.64944 * 10 8 5 12 12 C 1.55137 * 104.72181 * 155.81577 * 11 10 8 13 13 C 1.55153 * 101.48256 * 37.29631 * 12 11 10 14 14 H 1.08999 * 110.72127 * 82.69997 * 13 12 11 15 15 N 1.46499 * 110.86991 * 205.89650 * 13 12 11 16 16 C 1.34781 * 120.00226 * 268.61158 * 15 13 12 17 17 O 1.21276 * 119.99922 * 0.02562 * 16 15 13 18 18 C 1.50697 * 119.99906 * 179.97438 * 16 15 13 19 19 S 1.81004 * 109.46994 * 180.02562 * 18 16 15 20 20 C 1.76200 * 99.99861 * 179.97438 * 19 18 16 21 21 H 1.08000 * 120.00107 * 359.97438 * 20 19 18 22 22 C 1.38800 * 119.99882 * 179.97438 * 20 19 18 23 23 N 1.31636 * 119.99794 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00133 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47277 * 60.00288 * 24 22 20 26 26 H 1.48506 * 109.47324 * 180.02562 * 24 22 20 27 27 H 1.48493 * 109.47610 * 300.00169 * 24 22 20 28 28 C 1.47025 * 125.64816 * 184.95513 * 10 8 5 29 29 H 1.08998 * 109.46927 * 269.99873 * 1 2 3 30 30 H 1.09001 * 109.46976 * 30.00042 * 1 2 3 31 31 H 1.08999 * 109.47410 * 149.99881 * 1 2 3 32 32 H 0.96999 * 120.00097 * 359.97438 * 4 2 1 33 33 H 1.09000 * 109.47247 * 57.65056 * 7 5 4 34 34 H 1.09001 * 109.47235 * 177.64964 * 7 5 4 35 35 H 1.08997 * 109.47326 * 297.64483 * 7 5 4 36 36 H 1.08998 * 110.36763 * 274.74436 * 11 10 8 37 37 H 1.08999 * 110.36820 * 37.06834 * 11 10 8 38 38 H 1.08998 * 111.18991 * 279.18727 * 12 11 10 39 39 H 1.08997 * 110.93444 * 155.28711 * 12 11 10 40 40 H 0.97008 * 119.99907 * 88.60970 * 15 13 12 41 41 H 1.09004 * 109.47402 * 299.99770 * 18 16 15 42 42 H 1.09003 * 109.47618 * 60.00133 * 18 16 15 43 43 H 0.97007 * 119.99811 * 179.97438 * 23 22 20 44 44 H 1.09001 * 109.87965 * 300.44528 * 28 10 8 45 45 H 1.09002 * 109.87817 * 61.45095 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6458 -1.1674 0.0056 6 1 4.0117 -0.3267 -0.5840 7 6 4.1498 -1.0388 1.4444 8 6 4.1506 -2.4563 -0.5902 9 8 3.4702 -3.4585 -0.5324 10 7 5.3582 -2.4951 -1.1875 11 6 6.3250 -1.3837 -1.2438 12 6 7.7025 -2.0691 -1.4425 13 6 7.3307 -3.2411 -2.3887 14 1 7.2928 -2.9035 -3.4244 15 7 8.2759 -4.3507 -2.2416 16 6 9.3681 -4.4144 -3.0288 17 8 9.5686 -3.5530 -3.8586 18 6 10.3407 -5.5555 -2.8771 19 16 11.6913 -5.3591 -4.0659 20 6 12.6501 -6.7857 -3.6781 21 1 12.3252 -7.4592 -2.8988 22 6 13.8229 -7.0438 -4.3740 23 7 14.2192 -6.2226 -5.3234 24 14 14.8397 -8.5558 -3.9624 25 1 14.0206 -9.7761 -4.1748 26 1 16.0356 -8.6025 -4.8417 27 1 15.2718 -8.4905 -2.5432 28 6 5.9268 -3.6510 -1.8962 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3634 -0.8899 -0.5138 32 1 1.6958 -2.0073 -0.0005 33 1 3.7499 -1.8566 2.0439 34 1 5.2390 -1.0809 1.4531 35 1 3.8197 -0.0874 1.8614 36 1 6.1004 -0.7276 -2.0847 37 1 6.3124 -0.8222 -0.3096 38 1 8.0978 -2.4405 -0.4970 39 1 8.4098 -1.3909 -1.9198 40 1 8.1158 -5.0395 -1.5776 41 1 10.7453 -5.5559 -1.8649 42 1 9.8265 -6.4985 -3.0632 43 1 15.0391 -6.4029 -5.8096 44 1 6.0053 -4.5001 -1.2174 45 1 5.2952 -3.9125 -2.7453 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001293532139.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:05:34 Heat of formation + Delta-G solvation = -136.555783 kcal Electronic energy + Delta-G solvation = -26805.896260 eV Core-core repulsion = 22755.361791 eV Total energy + Delta-G solvation = -4050.534469 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.78711 -40.87091 -40.18860 -38.59419 -36.11156 -35.38342 -34.57287 -32.89228 -31.97684 -30.74871 -29.91128 -29.12415 -27.64400 -25.91288 -23.99516 -22.63880 -21.73782 -21.55102 -20.61431 -19.85081 -18.81582 -18.18949 -17.69407 -17.54140 -17.27442 -16.86770 -16.70887 -16.36366 -16.27939 -15.86346 -15.78117 -15.31132 -14.80688 -14.76585 -14.56911 -14.41246 -14.11377 -13.96307 -13.77351 -13.50783 -13.32949 -13.23672 -13.16186 -13.03386 -12.94115 -12.86401 -12.72418 -12.70248 -12.58177 -11.98024 -11.73737 -11.16201 -11.12105 -11.04246 -10.97771 -10.32215 -10.26936 -10.19226 -9.86252 -8.65085 -8.33878 -6.11490 1.19955 1.27828 1.43302 1.44324 1.51504 1.57569 1.58637 1.64193 2.20174 2.28399 2.38237 3.00431 3.09504 3.32069 3.43598 3.56519 3.84912 3.92768 3.94789 4.02032 4.04003 4.12426 4.20760 4.32296 4.46017 4.50067 4.53383 4.56785 4.66307 4.67742 4.69768 4.73543 4.89326 5.03210 5.06408 5.10371 5.11430 5.27280 5.42462 5.43025 6.20319 6.21445 6.44001 6.45022 6.81538 7.07750 7.14100 7.20876 8.74861 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.039427 B = 0.001627 C = 0.001607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.000353 B =17200.870766 C =17418.086980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.511 3.489 3 O -0.590 6.590 4 N -0.714 5.714 5 C 0.129 3.871 6 H 0.108 0.892 7 C -0.152 4.152 8 C 0.532 3.468 9 O -0.565 6.565 10 N -0.610 5.610 11 C 0.096 3.904 12 C -0.139 4.139 13 C 0.135 3.865 14 H 0.092 0.908 15 N -0.705 5.705 16 C 0.541 3.459 17 O -0.559 6.559 18 C -0.131 4.131 19 S -0.148 6.148 20 C -0.549 4.549 21 H 0.083 0.917 22 C 0.015 3.985 23 N -0.911 5.911 24 Si 0.996 3.004 25 H -0.263 1.263 26 H -0.280 1.280 27 H -0.262 1.262 28 C 0.109 3.891 29 H 0.113 0.887 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.417 0.583 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.107 0.893 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.417 0.583 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.271 0.729 44 H 0.084 0.916 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.536 9.026 15.837 32.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.300 3.700 3 O -0.470 6.470 4 N -0.368 5.368 5 C 0.020 3.980 6 H 0.126 0.874 7 C -0.211 4.211 8 C 0.320 3.680 9 O -0.444 6.444 10 N -0.343 5.343 11 C -0.026 4.026 12 C -0.178 4.178 13 C 0.030 3.970 14 H 0.110 0.890 15 N -0.359 5.359 16 C 0.327 3.673 17 O -0.436 6.436 18 C -0.283 4.283 19 S 0.079 5.921 20 C -0.696 4.696 21 H 0.101 0.899 22 C -0.190 4.190 23 N -0.547 5.547 24 Si 0.818 3.182 25 H -0.188 1.188 26 H -0.205 1.205 27 H -0.187 1.187 28 C -0.014 4.014 29 H 0.131 0.869 30 H 0.115 0.885 31 H 0.121 0.879 32 H 0.255 0.745 33 H 0.085 0.915 34 H 0.105 0.895 35 H 0.090 0.910 36 H 0.106 0.894 37 H 0.125 0.875 38 H 0.110 0.890 39 H 0.106 0.894 40 H 0.255 0.745 41 H 0.130 0.870 42 H 0.128 0.872 43 H 0.080 0.920 44 H 0.103 0.897 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -26.107 10.697 14.390 31.671 hybrid contribution 0.476 -2.421 0.930 2.637 sum -25.631 8.275 15.320 30.986 Atomic orbital electron populations 1.21917 0.87921 1.06213 1.06452 1.21579 0.92289 0.82313 0.73799 1.90714 1.71890 1.32731 1.51701 1.45999 1.05534 1.10161 1.75146 1.20748 0.82705 0.95133 0.99383 0.87369 1.22064 1.02734 1.03418 0.92841 1.20468 0.79921 0.90340 0.77279 1.90703 1.57034 1.36982 1.59670 1.48359 1.16674 1.15454 1.53825 1.22688 0.86282 0.89071 1.04520 1.23236 0.96782 0.97177 1.00626 1.21879 0.87001 0.87235 1.00934 0.88982 1.45647 1.22857 1.28108 1.39286 1.19984 0.81634 0.85702 0.79966 1.90702 1.75159 1.41302 1.36465 1.23383 0.99140 1.00512 1.05227 1.85548 1.22780 1.35960 1.47831 1.23187 1.11042 1.10909 1.24491 0.89909 1.26092 0.97976 1.00806 0.94122 1.70174 1.23607 1.38304 1.22605 0.85033 0.77150 0.77391 0.78612 1.18756 1.20472 1.18678 1.22019 0.92822 0.89457 0.97098 0.86859 0.88548 0.87922 0.74544 0.91472 0.89483 0.90965 0.89449 0.87524 0.88979 0.89392 0.74505 0.87041 0.87223 0.92016 0.89734 0.90559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.98 10.30 71.24 0.73 -0.24 16 2 C 0.51 7.41 7.90 87.66 0.69 8.11 16 3 O -0.59 -13.58 16.76 -3.00 -0.05 -13.63 16 4 N -0.71 -9.34 5.06 -446.10 -2.26 -11.60 16 5 C 0.13 1.80 2.28 44.24 0.10 1.90 16 6 H 0.11 1.58 6.94 -2.38 -0.02 1.57 16 7 C -0.15 -1.70 9.39 71.98 0.68 -1.02 16 8 C 0.53 9.06 7.04 87.66 0.62 9.67 16 9 O -0.57 -12.90 16.37 -3.02 -0.05 -12.95 16 10 N -0.61 -9.03 3.32 -811.36 -2.70 -11.73 16 11 C 0.10 1.07 6.27 86.94 0.55 1.62 16 12 C -0.14 -2.05 6.79 32.06 0.22 -1.83 16 13 C 0.14 2.52 3.31 46.18 0.15 2.67 16 14 H 0.09 2.11 7.55 -2.39 -0.02 2.09 16 15 N -0.70 -15.13 5.18 -436.94 -2.26 -17.40 16 16 C 0.54 18.03 7.85 87.66 0.69 18.72 16 17 O -0.56 -23.77 15.51 -3.02 -0.05 -23.82 16 18 C -0.13 -4.87 6.16 71.23 0.44 -4.43 16 19 S -0.15 -7.97 20.57 -56.49 -1.16 -9.13 16 20 C -0.55 -30.66 9.50 67.95 0.65 -30.01 16 21 H 0.08 4.27 7.80 -2.91 -0.02 4.25 16 22 C 0.01 0.84 5.49 84.86 0.47 1.30 16 23 N -0.91 -55.16 13.22 21.65 0.29 -54.87 16 24 Si 1.00 42.88 29.55 68.60 2.03 44.90 16 25 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 26 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 27 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 28 C 0.11 1.74 6.62 86.73 0.57 2.31 16 29 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.10 0.20 8.14 -2.39 -0.02 0.18 16 32 H 0.42 4.60 7.81 -92.71 -0.72 3.88 16 33 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.09 0.71 6.99 -2.39 -0.02 0.70 16 35 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.11 0.76 6.57 -2.39 -0.02 0.75 16 38 H 0.09 1.23 8.14 -2.39 -0.02 1.22 16 39 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.42 6.34 8.37 -92.70 -0.78 5.56 16 41 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 42 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 43 H 0.27 15.29 8.31 -92.70 -0.77 14.52 16 44 H 0.08 1.26 7.72 -2.39 -0.02 1.24 16 45 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -83.01 393.39 -0.14 -83.15 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -0.47 Total: 18.31 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: 6.55 Total: 8.76 kcal Atomic # 7 Polarization: -88.66 SS G_CDS: -6.93 Total: -95.60 kcal Atomic # 8 Polarization: -50.26 SS G_CDS: -0.15 Total: -50.40 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.90 kcal Atomic # 16 Polarization: -7.97 SS G_CDS: -1.16 Total: -9.13 kcal Total: -83.01 -0.14 -83.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001293532139.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.406 kcal (2) G-P(sol) polarization free energy of solvation -83.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds