Wall clock time and date at job start Wed Apr 1 2020 02:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21277 * 120.00064 * 2 1 4 4 N 1.34784 * 119.99979 * 179.97438 * 2 1 3 5 5 C 1.46493 * 119.99775 * 180.02562 * 4 2 1 6 6 H 1.09001 * 109.47786 * 35.00143 * 5 4 2 7 7 C 1.52997 * 109.47395 * 274.99719 * 5 4 2 8 8 C 1.50706 * 109.47128 * 154.99871 * 5 4 2 9 9 O 1.21283 * 119.99503 * 359.97438 * 8 5 4 10 10 N 1.34773 * 120.00081 * 179.72554 * 8 5 4 11 11 C 1.47422 * 125.65007 * 359.68582 * 10 8 5 12 12 C 1.55127 * 104.72145 * 155.81775 * 11 10 8 13 13 C 1.55163 * 101.48383 * 37.30287 * 12 11 10 14 14 H 1.08993 * 110.72218 * 82.69114 * 13 12 11 15 15 N 1.46504 * 110.86883 * 205.89820 * 13 12 11 16 16 C 1.34783 * 119.99559 * 268.60426 * 15 13 12 17 17 O 1.21274 * 120.00203 * 0.02562 * 16 15 13 18 18 C 1.50701 * 119.99676 * 180.02562 * 16 15 13 19 19 S 1.80999 * 109.46950 * 179.97438 * 18 16 15 20 20 C 1.76197 * 99.99886 * 179.97438 * 19 18 16 21 21 H 1.08004 * 120.00084 * 0.02562 * 20 19 18 22 22 C 1.38803 * 120.00156 * 179.97438 * 20 19 18 23 23 N 1.31627 * 119.99570 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00340 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46831 * 60.00260 * 24 22 20 26 26 H 1.48494 * 109.47250 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.46974 * 300.00684 * 24 22 20 28 28 C 1.47026 * 125.64547 * 180.02562 * 10 8 5 29 29 H 1.09002 * 109.47639 * 270.00653 * 1 2 3 30 30 H 1.09001 * 109.47114 * 30.00740 * 1 2 3 31 31 H 1.09004 * 109.47471 * 150.00267 * 1 2 3 32 32 H 0.96993 * 119.99690 * 359.97438 * 4 2 1 33 33 H 1.08995 * 109.47505 * 180.02562 * 7 5 4 34 34 H 1.09001 * 109.47000 * 300.00906 * 7 5 4 35 35 H 1.09002 * 109.46917 * 60.00126 * 7 5 4 36 36 H 1.08994 * 110.37063 * 274.75060 * 11 10 8 37 37 H 1.09008 * 110.36295 * 37.07780 * 11 10 8 38 38 H 1.08997 * 111.19644 * 279.19709 * 12 11 10 39 39 H 1.09006 * 110.93888 * 155.28982 * 12 11 10 40 40 H 0.97000 * 120.00169 * 88.60824 * 15 13 12 41 41 H 1.08999 * 109.47148 * 300.00290 * 18 16 15 42 42 H 1.08999 * 109.47482 * 60.00069 * 18 16 15 43 43 H 0.97002 * 120.00078 * 180.02562 * 23 22 20 44 44 H 1.08999 * 109.88342 * 300.43339 * 28 10 8 45 45 H 1.09000 * 109.88440 * 61.45040 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.6458 -1.1672 0.0011 6 1 4.0090 -0.3253 0.5905 7 6 4.1564 -1.0419 -1.4357 8 6 4.1480 -2.4548 0.6021 9 8 3.3596 -3.2899 0.9920 10 7 5.4730 -2.6803 0.7017 11 6 6.5367 -1.7608 0.2587 12 6 7.7719 -2.1453 1.1148 13 6 7.6255 -3.6880 1.1929 14 1 8.0346 -4.1599 0.2996 15 7 8.2733 -4.2135 2.3973 16 6 9.5619 -4.6061 2.3526 17 8 10.1852 -4.5240 1.3156 18 6 10.2280 -5.1471 3.5914 19 16 11.9429 -5.5848 3.2120 20 6 12.4653 -6.1704 4.7895 21 1 11.7744 -6.1755 5.6197 22 6 13.7645 -6.6263 4.9652 23 7 14.6064 -6.6206 3.9534 24 14 14.3187 -7.2466 6.6379 25 1 13.4759 -8.4006 7.0419 26 1 15.7391 -7.6729 6.5620 27 1 14.1815 -6.1588 7.6395 28 6 6.0968 -3.8872 1.2637 29 1 -0.3634 0.0001 1.0276 30 1 -0.3633 0.8899 -0.5139 31 1 -0.3634 -0.8900 -0.5138 32 1 1.6959 -2.0072 0.0013 33 1 5.2464 -1.0423 -1.4353 34 1 3.7932 -1.8838 -2.0251 35 1 3.7932 -0.1106 -1.8704 36 1 6.7467 -1.9059 -0.8009 37 1 6.2491 -0.7271 0.4514 38 1 7.7187 -1.6971 2.1069 39 1 8.6973 -1.8657 0.6111 40 1 7.7748 -4.2788 3.2268 41 1 10.2108 -4.3886 4.3739 42 1 9.6943 -6.0339 3.9332 43 1 15.5142 -6.9395 4.0760 44 1 5.7876 -4.0156 2.3010 45 1 5.8069 -4.7607 0.6797 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001293532141.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:05:38 Heat of formation + Delta-G solvation = -104.412439 kcal Electronic energy + Delta-G solvation = -26829.553870 eV Core-core repulsion = 22780.413241 eV Total energy + Delta-G solvation = -4049.140629 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.08933 -39.96220 -39.20200 -37.67005 -35.47825 -34.33706 -32.46320 -32.24111 -31.07782 -29.81123 -29.31760 -28.02707 -25.57494 -25.32388 -23.23385 -21.75354 -20.96816 -20.58271 -20.01622 -18.13839 -17.88681 -17.27597 -16.75757 -16.73560 -16.26683 -15.75958 -15.58418 -15.35458 -14.98991 -14.83222 -14.54179 -14.11029 -14.02110 -13.93361 -13.61082 -13.34858 -13.18360 -13.04106 -12.85397 -12.77399 -12.64131 -12.56664 -12.41213 -12.11207 -11.88992 -11.73488 -11.24203 -11.08071 -11.06210 -10.80006 -10.42503 -10.34728 -9.86685 -9.68448 -9.53881 -9.22571 -9.10004 -9.03004 -8.29583 -6.54595 -6.25022 -3.96188 2.03443 2.07872 2.23303 2.79322 2.94269 2.99861 3.21431 3.25396 3.28279 3.61798 3.77183 4.12178 4.17265 4.29090 4.36026 4.50992 4.58326 4.71380 4.74952 4.78951 4.82127 4.92886 5.05093 5.07546 5.10319 5.10578 5.21884 5.33689 5.36621 5.44540 5.54786 5.60900 5.64442 5.73474 5.81674 5.84419 5.87000 6.07960 6.45893 6.90751 7.00247 7.52123 7.55466 7.56748 7.72793 8.31561 8.46905 9.20383 10.82315 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.035519 B = 0.001636 C = 0.001609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.120762 B =17109.941558 C =17395.469265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.515 3.485 3 O -0.547 6.547 4 N -0.715 5.715 5 C 0.128 3.872 6 H 0.115 0.885 7 C -0.167 4.167 8 C 0.528 3.472 9 O -0.536 6.536 10 N -0.610 5.610 11 C 0.093 3.907 12 C -0.147 4.147 13 C 0.137 3.863 14 H 0.109 0.891 15 N -0.731 5.731 16 C 0.536 3.464 17 O -0.514 6.514 18 C -0.154 4.154 19 S -0.058 6.058 20 C -0.538 4.538 21 H 0.072 0.928 22 C 0.075 3.925 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 C 0.103 3.897 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.411 0.589 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.400 0.600 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.269 0.731 44 H 0.076 0.924 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.471 11.672 -8.832 30.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.302 3.698 3 O -0.424 6.424 4 N -0.370 5.370 5 C 0.020 3.980 6 H 0.132 0.868 7 C -0.226 4.226 8 C 0.316 3.684 9 O -0.413 6.413 10 N -0.345 5.345 11 C -0.029 4.029 12 C -0.186 4.186 13 C 0.031 3.969 14 H 0.127 0.873 15 N -0.385 5.385 16 C 0.323 3.677 17 O -0.387 6.387 18 C -0.305 4.305 19 S 0.168 5.832 20 C -0.686 4.686 21 H 0.091 0.909 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 C -0.020 4.020 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.100 0.900 32 H 0.248 0.752 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.115 0.885 40 H 0.235 0.765 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.079 0.921 44 H 0.095 0.905 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -25.307 12.069 -10.427 29.914 hybrid contribution -0.770 -0.967 2.748 3.013 sum -26.078 11.102 -7.680 29.365 Atomic orbital electron populations 1.21871 0.91042 1.05069 1.05095 1.20872 0.90814 0.83050 0.75041 1.90734 1.70749 1.31332 1.49621 1.45895 1.05607 1.09896 1.75584 1.20671 0.82286 0.96391 0.98663 0.86768 1.22284 1.02546 1.03671 0.94052 1.20250 0.80869 0.88513 0.78789 1.90720 1.54277 1.46867 1.49408 1.48284 1.04871 1.20124 1.61215 1.22665 0.86760 0.94181 0.99319 1.23326 0.98010 0.95963 1.01302 1.21825 0.90392 0.93983 0.90724 0.87279 1.45962 1.12853 1.67291 1.12425 1.20347 0.80699 0.76284 0.90394 1.90705 1.63121 1.52894 1.32007 1.23540 1.05462 1.03614 0.97882 1.85382 0.98940 1.82176 1.16697 1.22827 1.00071 1.49395 0.96292 0.90945 1.24985 0.95472 0.95121 0.97906 1.70001 1.05763 1.43939 1.30553 0.86224 0.77735 0.79175 0.82370 1.19927 1.20783 1.19933 1.22148 0.91928 0.87817 1.00115 0.88586 0.88651 0.89964 0.75208 0.90178 0.91658 0.90589 0.89977 0.89735 0.89837 0.88546 0.76496 0.89100 0.89083 0.92090 0.90550 0.90133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.68 10.30 36.00 0.37 -0.31 16 2 C 0.51 4.07 7.90 -10.98 -0.09 3.98 16 3 O -0.55 -6.47 16.76 5.56 0.09 -6.37 16 4 N -0.72 -5.17 4.95 -54.94 -0.27 -5.44 16 5 C 0.13 0.97 2.33 -69.08 -0.16 0.81 16 6 H 0.11 0.92 7.30 -51.93 -0.38 0.55 16 7 C -0.17 -1.01 9.28 37.16 0.34 -0.66 16 8 C 0.53 4.88 7.29 -10.98 -0.08 4.80 16 9 O -0.54 -6.51 16.16 5.56 0.09 -6.42 16 10 N -0.61 -4.94 3.32 -170.38 -0.57 -5.51 16 11 C 0.09 0.58 5.13 -2.41 -0.01 0.57 16 12 C -0.15 -1.19 6.79 -24.46 -0.17 -1.36 16 13 C 0.14 1.34 3.31 -66.09 -0.22 1.12 16 14 H 0.11 1.23 7.55 -51.93 -0.39 0.84 16 15 N -0.73 -8.45 5.18 -52.03 -0.27 -8.72 16 16 C 0.54 9.09 7.85 -10.98 -0.09 9.00 16 17 O -0.51 -10.68 15.51 5.56 0.09 -10.59 16 18 C -0.15 -2.93 6.16 36.01 0.22 -2.71 16 19 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 20 C -0.54 -15.01 9.50 30.94 0.29 -14.71 16 21 H 0.07 1.91 7.80 -52.48 -0.41 1.50 16 22 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -25.74 13.22 55.49 0.73 -25.00 16 24 Si 0.92 21.08 29.55 -169.99 -5.02 16.06 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 27 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 28 C 0.10 0.89 6.62 -3.06 -0.02 0.87 16 29 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 32 H 0.41 2.58 7.79 -40.82 -0.32 2.26 16 33 H 0.08 0.38 4.95 -51.93 -0.26 0.12 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.42 7.08 -51.93 -0.37 0.05 16 37 H 0.08 0.41 7.34 -51.92 -0.38 0.03 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.40 3.62 8.37 -40.82 -0.34 3.28 16 41 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 42 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 43 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 44 H 0.08 0.66 7.72 -51.93 -0.40 0.26 16 45 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 390.13 15.07 5.88 5.88 Total: -1.00 -37.23 390.13 -7.77 -44.99 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -6.61 Total: 1.48 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: 0.30 Total: 3.39 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: -0.37 Total: -44.67 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: 0.27 Total: -23.39 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -37.23 -7.77 -44.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001293532141.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.421 kcal (2) G-P(sol) polarization free energy of solvation -37.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds