Wall clock time and date at job start Wed Apr 1 2020 02:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21277 * 120.00064 * 2 1 4 4 N 1.34784 * 119.99979 * 179.97438 * 2 1 3 5 5 C 1.46493 * 119.99775 * 180.02562 * 4 2 1 6 6 H 1.09001 * 109.47786 * 35.00143 * 5 4 2 7 7 C 1.52997 * 109.47395 * 274.99719 * 5 4 2 8 8 C 1.50706 * 109.47128 * 154.99871 * 5 4 2 9 9 O 1.21283 * 119.99503 * 359.97438 * 8 5 4 10 10 N 1.34773 * 120.00081 * 179.72554 * 8 5 4 11 11 C 1.47422 * 125.65007 * 359.68582 * 10 8 5 12 12 C 1.55127 * 104.72145 * 155.81775 * 11 10 8 13 13 C 1.55163 * 101.48383 * 37.30287 * 12 11 10 14 14 H 1.08993 * 110.72218 * 82.69114 * 13 12 11 15 15 N 1.46504 * 110.86883 * 205.89820 * 13 12 11 16 16 C 1.34783 * 119.99559 * 268.60426 * 15 13 12 17 17 O 1.21274 * 120.00203 * 0.02562 * 16 15 13 18 18 C 1.50701 * 119.99676 * 180.02562 * 16 15 13 19 19 S 1.80999 * 109.46950 * 179.97438 * 18 16 15 20 20 C 1.76197 * 99.99886 * 179.97438 * 19 18 16 21 21 H 1.08004 * 120.00084 * 0.02562 * 20 19 18 22 22 C 1.38803 * 120.00156 * 179.97438 * 20 19 18 23 23 N 1.31627 * 119.99570 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00340 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46831 * 60.00260 * 24 22 20 26 26 H 1.48494 * 109.47250 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.46974 * 300.00684 * 24 22 20 28 28 C 1.47026 * 125.64547 * 180.02562 * 10 8 5 29 29 H 1.09002 * 109.47639 * 270.00653 * 1 2 3 30 30 H 1.09001 * 109.47114 * 30.00740 * 1 2 3 31 31 H 1.09004 * 109.47471 * 150.00267 * 1 2 3 32 32 H 0.96993 * 119.99690 * 359.97438 * 4 2 1 33 33 H 1.08995 * 109.47505 * 180.02562 * 7 5 4 34 34 H 1.09001 * 109.47000 * 300.00906 * 7 5 4 35 35 H 1.09002 * 109.46917 * 60.00126 * 7 5 4 36 36 H 1.08994 * 110.37063 * 274.75060 * 11 10 8 37 37 H 1.09008 * 110.36295 * 37.07780 * 11 10 8 38 38 H 1.08997 * 111.19644 * 279.19709 * 12 11 10 39 39 H 1.09006 * 110.93888 * 155.28982 * 12 11 10 40 40 H 0.97000 * 120.00169 * 88.60824 * 15 13 12 41 41 H 1.08999 * 109.47148 * 300.00290 * 18 16 15 42 42 H 1.08999 * 109.47482 * 60.00069 * 18 16 15 43 43 H 0.97002 * 120.00078 * 180.02562 * 23 22 20 44 44 H 1.08999 * 109.88342 * 300.43339 * 28 10 8 45 45 H 1.09000 * 109.88440 * 61.45040 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.6458 -1.1672 0.0011 6 1 4.0090 -0.3253 0.5905 7 6 4.1564 -1.0419 -1.4357 8 6 4.1480 -2.4548 0.6021 9 8 3.3596 -3.2899 0.9920 10 7 5.4730 -2.6803 0.7017 11 6 6.5367 -1.7608 0.2587 12 6 7.7719 -2.1453 1.1148 13 6 7.6255 -3.6880 1.1929 14 1 8.0346 -4.1599 0.2996 15 7 8.2733 -4.2135 2.3973 16 6 9.5619 -4.6061 2.3526 17 8 10.1852 -4.5240 1.3156 18 6 10.2280 -5.1471 3.5914 19 16 11.9429 -5.5848 3.2120 20 6 12.4653 -6.1704 4.7895 21 1 11.7744 -6.1755 5.6197 22 6 13.7645 -6.6263 4.9652 23 7 14.6064 -6.6206 3.9534 24 14 14.3187 -7.2466 6.6379 25 1 13.4759 -8.4006 7.0419 26 1 15.7391 -7.6729 6.5620 27 1 14.1815 -6.1588 7.6395 28 6 6.0968 -3.8872 1.2637 29 1 -0.3634 0.0001 1.0276 30 1 -0.3633 0.8899 -0.5139 31 1 -0.3634 -0.8900 -0.5138 32 1 1.6959 -2.0072 0.0013 33 1 5.2464 -1.0423 -1.4353 34 1 3.7932 -1.8838 -2.0251 35 1 3.7932 -0.1106 -1.8704 36 1 6.7467 -1.9059 -0.8009 37 1 6.2491 -0.7271 0.4514 38 1 7.7187 -1.6971 2.1069 39 1 8.6973 -1.8657 0.6111 40 1 7.7748 -4.2788 3.2268 41 1 10.2108 -4.3886 4.3739 42 1 9.6943 -6.0339 3.9332 43 1 15.5142 -6.9395 4.0760 44 1 5.7876 -4.0156 2.3010 45 1 5.8069 -4.7607 0.6797 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001293532141.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:05:37 Heat of formation + Delta-G solvation = -133.565657 kcal Electronic energy + Delta-G solvation = -26830.818048 eV Core-core repulsion = 22780.413241 eV Total energy + Delta-G solvation = -4050.404808 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.80846 -40.86110 -40.18230 -38.57094 -36.15104 -35.39078 -34.57561 -32.95797 -31.91167 -30.75340 -29.96463 -28.92544 -27.64078 -26.04211 -23.86777 -22.67335 -21.73031 -21.56799 -20.70723 -19.85047 -18.71762 -18.20196 -17.68542 -17.51977 -17.27988 -16.86910 -16.61123 -16.37120 -16.34246 -16.04398 -15.71119 -15.15633 -14.80668 -14.71668 -14.64569 -14.46036 -14.27067 -13.76275 -13.68585 -13.49352 -13.47853 -13.28233 -13.16261 -13.09632 -12.87863 -12.77034 -12.72826 -12.63620 -12.46290 -11.97897 -11.73808 -11.14385 -11.12322 -11.03115 -10.97572 -10.31020 -10.27192 -10.18666 -9.84911 -8.65057 -8.34036 -6.11530 1.23664 1.32837 1.40370 1.44099 1.50016 1.57482 1.58714 1.65374 2.19833 2.28189 2.38010 3.00264 3.10793 3.31943 3.43376 3.58240 3.84867 3.92751 3.95139 4.02575 4.05979 4.11897 4.19875 4.32004 4.49823 4.51602 4.53417 4.58710 4.65979 4.68257 4.71314 4.75728 4.90250 5.04269 5.07684 5.10889 5.13669 5.28351 5.42483 5.43602 6.20169 6.22568 6.44715 6.45351 6.82995 7.07628 7.15319 7.20744 8.74711 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.035519 B = 0.001636 C = 0.001609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.120762 B =17109.941558 C =17395.469265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.510 3.490 3 O -0.592 6.592 4 N -0.712 5.712 5 C 0.130 3.870 6 H 0.111 0.889 7 C -0.160 4.160 8 C 0.530 3.470 9 O -0.568 6.568 10 N -0.608 5.608 11 C 0.096 3.904 12 C -0.142 4.142 13 C 0.136 3.864 14 H 0.095 0.905 15 N -0.706 5.706 16 C 0.541 3.459 17 O -0.558 6.558 18 C -0.132 4.132 19 S -0.147 6.147 20 C -0.549 4.549 21 H 0.082 0.918 22 C 0.015 3.985 23 N -0.910 5.910 24 Si 0.996 3.004 25 H -0.263 1.263 26 H -0.279 1.279 27 H -0.263 1.263 28 C 0.110 3.890 29 H 0.108 0.892 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.416 0.584 33 H 0.094 0.906 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.416 0.584 41 H 0.110 0.890 42 H 0.109 0.891 43 H 0.271 0.729 44 H 0.081 0.919 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.421 12.021 -7.763 31.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.300 3.700 3 O -0.472 6.472 4 N -0.366 5.366 5 C 0.021 3.979 6 H 0.129 0.871 7 C -0.219 4.219 8 C 0.318 3.682 9 O -0.447 6.447 10 N -0.341 5.341 11 C -0.026 4.026 12 C -0.181 4.181 13 C 0.030 3.970 14 H 0.113 0.887 15 N -0.360 5.360 16 C 0.327 3.673 17 O -0.435 6.435 18 C -0.283 4.283 19 S 0.080 5.920 20 C -0.697 4.697 21 H 0.100 0.900 22 C -0.190 4.190 23 N -0.546 5.546 24 Si 0.818 3.182 25 H -0.188 1.188 26 H -0.204 1.204 27 H -0.187 1.187 28 C -0.014 4.014 29 H 0.126 0.874 30 H 0.116 0.884 31 H 0.124 0.876 32 H 0.254 0.746 33 H 0.113 0.887 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.117 0.883 37 H 0.122 0.878 38 H 0.105 0.895 39 H 0.108 0.892 40 H 0.254 0.746 41 H 0.129 0.871 42 H 0.127 0.873 43 H 0.080 0.920 44 H 0.099 0.901 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -27.311 12.420 -9.349 31.426 hybrid contribution -0.279 -1.047 2.381 2.616 sum -27.591 11.373 -6.968 30.645 Atomic orbital electron populations 1.21909 0.87979 1.06374 1.06217 1.21566 0.92292 0.82334 0.73818 1.90711 1.71907 1.32763 1.51839 1.45952 1.05590 1.10116 1.74937 1.20691 0.82678 0.95157 0.99384 0.87149 1.22242 1.03415 1.03365 0.92833 1.20483 0.80798 0.88590 0.78294 1.90705 1.55100 1.47985 1.50908 1.48295 1.04964 1.20115 1.60728 1.22803 0.85169 0.94778 0.99829 1.23267 0.98683 0.94277 1.01908 1.21897 0.90856 0.95127 0.89120 0.88663 1.45662 1.11002 1.65405 1.13927 1.19965 0.82029 0.76317 0.88942 1.90698 1.64568 1.55094 1.33155 1.23386 1.00425 1.05038 0.99480 1.85524 1.05569 1.82828 1.18048 1.23188 1.00692 1.49253 0.96561 0.89962 1.26084 0.95523 0.95131 1.02217 1.70165 1.06182 1.45156 1.33142 0.85040 0.77282 0.78926 0.76978 1.18763 1.20429 1.18728 1.22015 0.90783 0.88122 1.00458 0.87403 0.88391 0.87636 0.74564 0.88738 0.91448 0.91214 0.88306 0.87790 0.89464 0.89210 0.74603 0.87148 0.87262 0.92000 0.90112 0.90308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.02 10.30 71.23 0.73 -0.29 16 2 C 0.51 7.55 7.90 87.65 0.69 8.25 16 3 O -0.59 -13.78 16.76 -3.02 -0.05 -13.83 16 4 N -0.71 -9.43 4.95 -446.10 -2.21 -11.64 16 5 C 0.13 1.79 2.33 44.25 0.10 1.89 16 6 H 0.11 1.65 7.30 -2.39 -0.02 1.63 16 7 C -0.16 -1.67 9.28 71.98 0.67 -1.00 16 8 C 0.53 8.96 7.29 87.66 0.64 9.59 16 9 O -0.57 -13.11 16.16 -3.04 -0.05 -13.16 16 10 N -0.61 -8.64 3.32 -811.35 -2.69 -11.33 16 11 C 0.10 0.97 5.13 86.93 0.45 1.41 16 12 C -0.14 -2.05 6.79 32.06 0.22 -1.84 16 13 C 0.14 2.46 3.31 46.18 0.15 2.61 16 14 H 0.10 2.08 7.55 -2.39 -0.02 2.07 16 15 N -0.71 -15.15 5.18 -436.90 -2.27 -17.41 16 16 C 0.54 17.98 7.85 87.66 0.69 18.67 16 17 O -0.56 -23.50 15.51 -3.01 -0.05 -23.55 16 18 C -0.13 -4.90 6.16 71.24 0.44 -4.46 16 19 S -0.15 -7.88 20.57 -56.49 -1.16 -9.04 16 20 C -0.55 -30.73 9.50 67.96 0.65 -30.08 16 21 H 0.08 4.26 7.80 -2.91 -0.02 4.24 16 22 C 0.02 0.86 5.49 84.86 0.47 1.33 16 23 N -0.91 -55.07 13.22 21.65 0.29 -54.78 16 24 Si 1.00 42.92 29.55 68.60 2.03 44.95 16 25 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 26 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 27 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 28 C 0.11 1.70 6.62 86.73 0.57 2.28 16 29 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 32 H 0.42 4.66 7.79 -92.71 -0.72 3.94 16 33 H 0.09 0.68 4.95 -2.39 -0.01 0.66 16 34 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.07 0.85 8.14 -2.39 -0.02 0.84 16 36 H 0.10 0.73 7.08 -2.39 -0.02 0.71 16 37 H 0.10 0.72 7.34 -2.38 -0.02 0.70 16 38 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 40 H 0.42 6.45 8.37 -92.71 -0.78 5.68 16 41 H 0.11 3.67 8.14 -2.40 -0.02 3.65 16 42 H 0.11 3.66 8.14 -2.40 -0.02 3.64 16 43 H 0.27 15.28 8.31 -92.71 -0.77 14.50 16 44 H 0.08 1.22 7.72 -2.39 -0.02 1.20 16 45 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -83.21 390.13 -0.16 -83.38 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: -0.47 Total: 18.05 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: 6.47 Total: 8.36 kcal Atomic # 7 Polarization: -88.28 SS G_CDS: -6.88 Total: -95.17 kcal Atomic # 8 Polarization: -50.39 SS G_CDS: -0.15 Total: -50.54 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Atomic # 16 Polarization: -7.88 SS G_CDS: -1.16 Total: -9.04 kcal Total: -83.21 -0.16 -83.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001293532141.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.188 kcal (2) G-P(sol) polarization free energy of solvation -83.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds