Wall clock time and date at job start Wed Apr 1 2020 02:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21283 * 119.99503 * 2 1 4 4 N 1.34777 * 120.00110 * 180.02562 * 2 1 3 5 5 C 1.46496 * 119.99614 * 180.02562 * 4 2 1 6 6 H 1.08999 * 109.47513 * 34.99437 * 5 4 2 7 7 C 1.53000 * 109.47071 * 274.99619 * 5 4 2 8 8 C 1.50703 * 109.47218 * 154.99641 * 5 4 2 9 9 O 1.21284 * 119.99858 * 0.02562 * 8 5 4 10 10 N 1.34774 * 120.00526 * 179.97438 * 8 5 4 11 11 C 1.46491 * 120.00362 * 180.02562 * 10 8 5 12 12 H 1.08998 * 112.85298 * 336.19996 * 11 10 8 13 13 C 1.53782 * 113.61500 * 107.50240 * 11 10 8 14 14 C 1.53778 * 87.08137 * 89.11805 * 13 11 10 15 15 H 1.09001 * 113.68925 * 270.87093 * 14 13 11 16 16 N 1.46504 * 113.61518 * 139.98257 * 14 13 11 17 17 C 1.34776 * 119.99835 * 107.50021 * 16 14 13 18 18 O 1.21273 * 120.00232 * 0.02562 * 17 16 14 19 19 C 1.50706 * 119.99717 * 179.97438 * 17 16 14 20 20 S 1.80999 * 109.46926 * 180.02562 * 19 17 16 21 21 C 1.76195 * 99.99857 * 180.02562 * 20 19 17 22 22 H 1.08000 * 120.00223 * 359.97438 * 21 20 19 23 23 C 1.38805 * 120.00322 * 179.97438 * 21 20 19 24 24 N 1.31628 * 120.00269 * 179.97438 * 23 21 20 25 25 Si 1.86799 * 119.99734 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47101 * 89.99360 * 25 23 21 27 27 H 1.48492 * 109.47224 * 209.99901 * 25 23 21 28 28 H 1.48507 * 109.46813 * 330.00131 * 25 23 21 29 29 C 1.53777 * 113.61657 * 205.00021 * 11 10 8 30 30 H 1.09001 * 109.46953 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47318 * 299.99467 * 1 2 3 32 32 H 1.09000 * 109.47161 * 60.00097 * 1 2 3 33 33 H 0.96996 * 119.99887 * 359.97438 * 4 2 1 34 34 H 1.08999 * 109.46803 * 300.00252 * 7 5 4 35 35 H 1.08998 * 109.47154 * 60.00048 * 7 5 4 36 36 H 1.09002 * 109.47184 * 180.02562 * 7 5 4 37 37 H 0.97001 * 119.99401 * 359.97438 * 10 8 5 38 38 H 1.09007 * 113.61740 * 203.66557 * 13 11 10 39 39 H 1.08999 * 113.61256 * 334.56610 * 13 11 10 40 40 H 0.97004 * 119.99611 * 287.50109 * 16 14 13 41 41 H 1.09000 * 109.46998 * 300.00706 * 19 17 16 42 42 H 1.09001 * 109.46958 * 60.00387 * 19 17 16 43 43 H 0.96995 * 120.00048 * 180.02562 * 24 23 21 44 44 H 1.08997 * 113.61608 * 25.43139 * 29 11 10 45 45 H 1.09001 * 113.61719 * 156.33191 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 3.6459 -1.1671 0.0000 6 1 4.0090 -0.3256 0.5901 7 6 4.1565 -1.0404 -1.4367 8 6 4.1482 -2.4551 0.5999 9 8 3.3600 -3.2911 0.9883 10 7 5.4732 -2.6786 0.7040 11 6 5.9614 -3.9308 1.2866 12 1 5.2359 -4.3994 1.9516 13 6 6.5662 -4.8962 0.2536 14 6 7.9117 -4.1942 0.5019 15 1 8.0831 -3.3343 -0.1456 16 7 9.0533 -5.1114 0.5436 17 6 9.9326 -5.1397 -0.4774 18 8 9.7791 -4.4056 -1.4304 19 6 11.1074 -6.0827 -0.4342 20 16 12.0957 -5.8846 -1.9375 21 6 13.3619 -7.0705 -1.6297 22 1 13.3502 -7.6486 -0.7175 23 6 14.3746 -7.2618 -2.5595 24 7 15.3208 -8.1474 -2.3293 25 14 14.3954 -6.2614 -4.1369 26 1 15.1689 -5.0123 -3.9207 27 1 15.0305 -7.0560 -5.2187 28 1 13.0031 -5.9204 -4.5251 29 6 7.3706 -3.8205 1.8920 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.6960 -2.0072 -0.0005 34 1 3.7934 -1.8819 -2.0267 35 1 3.7932 -0.1088 -1.8706 36 1 5.2465 -1.0408 -1.4363 37 1 6.1036 -2.0104 0.3923 38 1 6.5529 -5.9392 0.5704 39 1 6.1794 -4.7544 -0.7555 40 1 9.1763 -5.6983 1.3061 41 1 11.7224 -5.8573 0.4370 42 1 10.7469 -7.1093 -0.3686 43 1 16.0287 -8.2808 -2.9789 44 1 7.6332 -2.8102 2.2056 45 1 7.5772 -4.5692 2.6568 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001295086491.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:32 Heat of formation + Delta-G solvation = -125.367627 kcal Electronic energy + Delta-G solvation = -26515.582940 eV Core-core repulsion = 22465.533626 eV Total energy + Delta-G solvation = -4050.049314 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.79935 -40.99509 -40.19837 -39.05978 -36.08043 -35.33389 -34.67050 -33.80008 -32.27040 -30.70870 -29.69724 -27.86428 -26.74211 -26.20331 -24.78841 -22.13807 -21.85916 -21.39663 -20.75171 -19.83162 -18.89560 -17.94521 -17.88738 -17.60100 -17.12429 -16.96213 -16.59843 -16.50066 -16.34292 -16.00202 -15.78351 -15.30451 -15.00094 -14.81820 -14.64499 -14.53140 -14.11686 -13.87720 -13.54521 -13.43542 -13.36011 -13.35025 -13.29195 -13.19341 -13.01035 -12.99033 -12.68059 -12.61203 -11.92880 -11.87701 -11.60358 -11.16996 -11.12104 -11.03542 -10.93738 -10.52909 -10.30649 -10.22093 -9.99239 -8.98826 -8.51475 -6.22010 1.00444 1.31384 1.36618 1.47102 1.54465 1.56897 1.57162 1.76372 2.23903 2.29462 2.37699 2.72909 2.86987 3.38899 3.43023 3.56074 3.85724 3.87131 3.90980 3.98872 4.04116 4.07031 4.26096 4.47418 4.48758 4.54579 4.57964 4.65993 4.71777 4.74276 4.78712 4.87051 4.99793 5.01757 5.06626 5.11657 5.28717 5.38269 5.59765 5.70697 6.11579 6.33488 6.46040 6.51017 6.93931 7.00845 7.15618 7.22589 8.60876 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.025026 B = 0.001695 C = 0.001619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.560627 B =16512.353082 C =17295.085934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.510 3.490 3 O -0.593 6.593 4 N -0.710 5.710 5 C 0.124 3.876 6 H 0.114 0.886 7 C -0.156 4.156 8 C 0.520 3.480 9 O -0.564 6.564 10 N -0.698 5.698 11 C 0.126 3.874 12 H 0.108 0.892 13 C -0.161 4.161 14 C 0.114 3.886 15 H 0.100 0.900 16 N -0.700 5.700 17 C 0.536 3.464 18 O -0.563 6.563 19 C -0.113 4.113 20 S -0.177 6.177 21 C -0.530 4.530 22 H 0.062 0.938 23 C 0.046 3.954 24 N -0.917 5.917 25 Si 0.914 3.086 26 H -0.262 1.262 27 H -0.260 1.260 28 H -0.237 1.237 29 C -0.131 4.131 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.416 0.584 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.415 0.585 38 H 0.105 0.895 39 H 0.060 0.940 40 H 0.419 0.581 41 H 0.114 0.886 42 H 0.113 0.887 43 H 0.277 0.723 44 H 0.095 0.905 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.294 12.853 10.217 33.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.299 3.701 3 O -0.474 6.474 4 N -0.364 5.364 5 C 0.015 3.985 6 H 0.131 0.869 7 C -0.214 4.214 8 C 0.307 3.693 9 O -0.443 6.443 10 N -0.349 5.349 11 C 0.020 3.980 12 H 0.126 0.874 13 C -0.201 4.201 14 C 0.009 3.991 15 H 0.118 0.882 16 N -0.353 5.353 17 C 0.322 3.678 18 O -0.441 6.441 19 C -0.264 4.264 20 S 0.050 5.950 21 C -0.677 4.677 22 H 0.080 0.920 23 C -0.159 4.159 24 N -0.555 5.555 25 Si 0.736 3.264 26 H -0.187 1.187 27 H -0.185 1.185 28 H -0.160 1.160 29 C -0.169 4.169 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.123 0.877 33 H 0.255 0.745 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.106 0.894 37 H 0.252 0.748 38 H 0.123 0.877 39 H 0.079 0.921 40 H 0.256 0.744 41 H 0.132 0.868 42 H 0.131 0.869 43 H 0.086 0.914 44 H 0.113 0.887 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -29.520 14.099 8.892 33.901 hybrid contribution 1.087 -1.303 0.530 1.778 sum -28.433 12.796 9.422 32.572 Atomic orbital electron populations 1.21882 0.88031 1.06260 1.06192 1.21574 0.92302 0.82400 0.73827 1.90715 1.71878 1.32809 1.52014 1.45980 1.05684 1.10039 1.74732 1.20773 0.82772 0.95933 0.99036 0.86854 1.22108 1.02743 1.03168 0.93399 1.20691 0.82823 0.88131 0.77699 1.90695 1.55943 1.47554 1.50118 1.45586 1.06556 1.20395 1.62384 1.21655 0.96090 0.84732 0.95506 0.87388 1.23962 0.95426 1.00639 1.00086 1.22734 0.83744 0.93281 0.99325 0.88204 1.45720 1.25707 1.42112 1.21786 1.19963 0.82886 0.82373 0.82591 1.90681 1.75616 1.43041 1.34763 1.23300 0.97813 1.03123 1.02194 1.84703 1.29350 1.53808 1.27179 1.22476 1.11623 1.24475 1.09156 0.91963 1.25559 0.93763 0.95487 1.01128 1.70014 1.13437 1.34418 1.37637 0.85871 0.81292 0.79474 0.79757 1.18689 1.18450 1.16048 1.23699 0.92307 1.04992 0.95908 0.88125 0.87795 0.87672 0.74530 0.91655 0.91497 0.89386 0.74771 0.87708 0.92135 0.74377 0.86781 0.86914 0.91398 0.88688 0.85786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.03 10.39 71.24 0.74 -0.29 16 2 C 0.51 7.60 7.90 87.66 0.69 8.29 16 3 O -0.59 -14.00 16.76 -3.04 -0.05 -14.05 16 4 N -0.71 -9.27 4.95 -446.09 -2.21 -11.47 16 5 C 0.12 1.64 2.98 44.25 0.13 1.77 16 6 H 0.11 1.59 7.58 -2.39 -0.02 1.57 16 7 C -0.16 -1.84 9.38 71.98 0.68 -1.17 16 8 C 0.52 7.74 7.22 87.66 0.63 8.38 16 9 O -0.56 -11.73 15.44 -3.04 -0.05 -11.78 16 10 N -0.70 -7.83 5.15 -440.06 -2.27 -10.09 16 11 C 0.13 1.45 4.32 45.52 0.20 1.65 16 12 H 0.11 1.41 7.46 -2.39 -0.02 1.39 16 13 C -0.16 -2.36 7.68 31.12 0.24 -2.12 16 14 C 0.11 1.80 4.12 45.52 0.19 1.99 16 15 H 0.10 1.94 7.46 -2.39 -0.02 1.92 16 16 N -0.70 -13.57 5.35 -440.04 -2.36 -15.93 16 17 C 0.54 16.76 7.85 87.66 0.69 17.45 16 18 O -0.56 -22.37 15.46 -3.01 -0.05 -22.41 16 19 C -0.11 -4.01 6.16 71.24 0.44 -3.58 16 20 S -0.18 -8.71 18.55 -56.49 -1.05 -9.76 16 21 C -0.53 -30.37 10.04 67.96 0.68 -29.69 16 22 H 0.06 3.76 8.03 -2.91 -0.02 3.74 16 23 C 0.05 2.67 5.50 84.86 0.47 3.14 16 24 N -0.92 -55.35 13.97 21.65 0.30 -55.04 16 25 Si 0.91 44.48 27.74 68.60 1.90 46.38 16 26 H -0.26 -12.44 7.11 99.48 0.71 -11.73 16 27 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 28 H -0.24 -11.47 6.74 99.48 0.67 -10.80 16 29 C -0.13 -1.11 7.58 31.12 0.24 -0.88 16 30 H 0.10 0.18 7.91 -2.39 -0.02 0.16 16 31 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.42 4.54 7.63 -92.71 -0.71 3.84 16 34 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.09 0.79 7.56 -2.39 -0.02 0.77 16 37 H 0.42 3.18 8.12 -92.71 -0.75 2.43 16 38 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 39 H 0.06 1.11 8.14 -2.39 -0.02 1.10 16 40 H 0.42 5.33 8.73 -92.71 -0.81 4.52 16 41 H 0.11 3.67 8.14 -2.40 -0.02 3.65 16 42 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 43 H 0.28 15.45 8.31 -92.71 -0.77 14.67 16 44 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.12 0.62 8.12 -2.39 -0.02 0.60 16 Total: -1.00 -83.14 395.64 -1.08 -84.21 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -1.26 Total: 15.00 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: 6.01 Total: 4.94 kcal Atomic # 7 Polarization: -86.01 SS G_CDS: -6.53 Total: -92.54 kcal Atomic # 8 Polarization: -48.09 SS G_CDS: -0.14 Total: -48.24 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.90 Total: 46.38 kcal Atomic # 16 Polarization: -8.71 SS G_CDS: -1.05 Total: -9.76 kcal Total: -83.14 -1.08 -84.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001295086491.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.153 kcal (2) G-P(sol) polarization free energy of solvation -83.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds