Wall clock time and date at job start Wed Apr 1 2020 02:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47516 * 2 1 4 4 C 1.53007 * 109.47211 * 240.00061 * 2 1 3 5 5 N 1.46497 * 109.47109 * 185.00004 * 4 2 1 6 6 C 1.34772 * 120.00091 * 180.02562 * 5 4 2 7 7 O 1.21287 * 119.99982 * 359.97438 * 6 5 4 8 8 C 1.50698 * 120.00104 * 180.02562 * 6 5 4 9 9 S 1.81008 * 109.47037 * 179.97438 * 8 6 5 10 10 C 1.76200 * 99.99834 * 179.97438 * 9 8 6 11 11 H 1.07994 * 120.00330 * 359.97438 * 10 9 8 12 12 C 1.38801 * 120.00032 * 180.02562 * 10 9 8 13 13 N 1.31637 * 119.99739 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00425 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.46855 * 59.99429 * 14 12 10 16 16 H 1.48492 * 109.47419 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.46821 * 299.99555 * 14 12 10 18 18 N 1.46506 * 109.47262 * 120.00338 * 2 1 3 19 19 C 1.34777 * 119.99873 * 275.00296 * 18 2 1 20 20 O 1.21284 * 119.99754 * 359.97438 * 19 18 2 21 21 C 1.50696 * 120.00137 * 179.97438 * 19 18 2 22 22 N 1.46500 * 109.47324 * 179.97438 * 21 19 18 23 23 C 1.46763 * 124.34794 * 269.72333 * 22 21 19 24 24 C 1.54656 * 105.38122 * 162.85439 * 23 22 21 25 25 C 1.54635 * 101.68488 * 25.76417 * 24 23 22 26 26 C 1.34420 * 124.34958 * 90.02190 * 22 21 19 27 27 O 1.21276 * 124.94100 * 0.43203 * 26 22 21 28 28 H 1.09002 * 109.46901 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47093 * 299.99896 * 1 2 3 30 30 H 1.09002 * 109.47121 * 59.99683 * 1 2 3 31 31 H 1.08993 * 109.47014 * 305.00023 * 4 2 1 32 32 H 1.08997 * 109.46860 * 65.00150 * 4 2 1 33 33 H 0.97004 * 119.99938 * 359.97438 * 5 4 2 34 34 H 1.08999 * 109.47462 * 299.99500 * 8 6 5 35 35 H 1.08997 * 109.47264 * 60.00065 * 8 6 5 36 36 H 0.96998 * 120.00046 * 180.02562 * 13 12 10 37 37 H 0.96995 * 120.00050 * 94.72411 * 18 2 1 38 38 H 1.09004 * 109.47043 * 299.99732 * 21 19 18 39 39 H 1.09000 * 109.46978 * 59.99653 * 21 19 18 40 40 H 1.08995 * 110.24965 * 281.98323 * 23 22 21 41 41 H 1.09007 * 110.24686 * 43.98760 * 23 22 21 42 42 H 1.09007 * 111.19714 * 267.59934 * 24 23 22 43 43 H 1.08996 * 110.82802 * 143.77877 * 24 23 22 44 44 H 1.08997 * 110.48669 * 216.30904 * 25 24 23 45 45 H 1.09001 * 110.59425 * 93.72341 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5000 -0.8264 -1.1906 6 6 4.1731 -1.4282 -2.1912 7 8 3.5700 -1.8832 -3.1400 8 6 5.6749 -1.5369 -2.1305 9 16 6.2783 -2.3900 -3.6085 10 6 8.0101 -2.3770 -3.2837 11 1 8.3863 -1.9239 -2.3785 12 6 8.8908 -2.9483 -4.1917 13 7 8.4322 -3.5002 -5.2953 14 14 10.7266 -2.9353 -3.8471 15 1 10.9975 -3.6603 -2.5797 16 1 11.4444 -3.6034 -4.9622 17 1 11.1974 -1.5322 -3.7251 18 7 2.0184 -0.6907 1.1962 19 6 2.1470 -0.0184 2.3572 20 8 1.8589 1.1585 2.4115 21 6 2.6488 -0.7289 3.5877 22 7 2.6987 0.2125 4.7091 23 6 3.8672 1.0322 5.0507 24 6 3.3294 2.1468 5.9782 25 6 2.0780 1.4717 6.5861 26 6 1.6822 0.4323 5.5606 27 8 0.6047 -0.1222 5.5139 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6054 -1.7197 -1.2952 32 1 1.7517 -0.1583 -2.1370 33 1 3.9824 -0.4621 -0.4319 34 1 6.1099 -0.5385 -2.0839 35 1 5.9629 -2.1005 -1.2431 36 1 9.0476 -3.8998 -5.9297 37 1 2.2453 -1.6328 1.1535 38 1 1.9759 -1.5508 3.8325 39 1 3.6480 -1.1215 3.3986 40 1 4.6110 0.4300 5.5723 41 1 4.2985 1.4685 4.1496 42 1 3.0554 3.0352 5.4090 43 1 4.0563 2.3906 6.7530 44 1 1.2783 2.2001 6.7193 45 1 2.3221 0.9965 7.5362 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001295425017.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:04:27 Heat of formation + Delta-G solvation = -108.257936 kcal Electronic energy + Delta-G solvation = -27001.144982 eV Core-core repulsion = 22951.837600 eV Total energy + Delta-G solvation = -4049.307383 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.01868 -39.94318 -39.06823 -36.81805 -36.43560 -33.77810 -33.36080 -32.46730 -31.50440 -29.45841 -27.98671 -27.79230 -26.03555 -25.41044 -22.54852 -22.17523 -20.96580 -20.42057 -19.81942 -18.14887 -17.76732 -17.32952 -16.85541 -16.48794 -16.31247 -15.95345 -15.75654 -15.15451 -14.93663 -14.84091 -14.31345 -14.14912 -14.10431 -13.96526 -13.53909 -13.36757 -13.18449 -13.07585 -12.95247 -12.90711 -12.60616 -12.42148 -12.20229 -11.90266 -11.85971 -11.48179 -11.32303 -11.08839 -11.07344 -10.80691 -10.47051 -10.19303 -9.87257 -9.57378 -9.44473 -9.15553 -9.10584 -9.00577 -8.29159 -6.54852 -6.25468 -3.96636 2.08351 2.24573 2.43589 2.88213 2.98468 3.03560 3.20157 3.24499 3.27420 3.64238 3.90803 4.03088 4.16495 4.27364 4.38476 4.45460 4.55689 4.65267 4.78545 4.81749 4.95245 5.02330 5.08502 5.09124 5.09598 5.26910 5.31691 5.36727 5.38001 5.48459 5.55546 5.63115 5.71860 5.81696 5.90010 5.93218 6.06715 6.11030 6.47826 6.64351 7.07943 7.54908 7.58695 7.75099 7.84989 8.30804 8.51322 9.19633 10.81847 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.013104 B = 0.002117 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.320290 B =13222.573461 C =14968.724675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.133 3.867 3 H 0.095 0.905 4 C 0.113 3.887 5 N -0.740 5.740 6 C 0.532 3.468 7 O -0.515 6.515 8 C -0.153 4.153 9 S -0.059 6.059 10 C -0.537 4.537 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 N -0.726 5.726 19 C 0.497 3.503 20 O -0.528 6.528 21 C 0.105 3.895 22 N -0.604 5.604 23 C 0.104 3.896 24 C -0.130 4.130 25 C -0.153 4.153 26 C 0.523 3.477 27 O -0.531 6.531 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.398 0.602 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.269 0.731 37 H 0.404 0.596 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.102 0.898 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.128 9.492 23.503 27.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.028 3.972 3 H 0.113 0.887 4 C -0.011 4.011 5 N -0.395 5.395 6 C 0.318 3.682 7 O -0.389 6.389 8 C -0.304 4.304 9 S 0.168 5.832 10 C -0.685 4.685 11 H 0.090 0.910 12 C -0.136 4.136 13 N -0.502 5.502 14 Si 0.745 3.255 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.199 1.199 18 N -0.380 5.380 19 C 0.282 3.718 20 O -0.403 6.403 21 C -0.021 4.021 22 N -0.338 5.338 23 C -0.019 4.019 24 C -0.168 4.168 25 C -0.193 4.193 26 C 0.311 3.689 27 O -0.407 6.407 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.232 0.768 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.079 0.921 37 H 0.239 0.761 38 H 0.131 0.869 39 H 0.131 0.869 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.103 0.897 43 H 0.110 0.890 44 H 0.121 0.879 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -12.883 9.155 21.692 26.838 hybrid contribution 2.264 0.244 1.490 2.722 sum -10.619 9.399 23.182 27.175 Atomic orbital electron populations 1.22102 0.93986 1.02786 1.03090 1.21242 0.95004 0.97751 0.83163 0.88704 1.21617 0.81116 1.01380 0.97028 1.45990 1.06774 1.62102 1.24634 1.20331 0.89535 0.76746 0.81608 1.90717 1.69857 1.45922 1.32419 1.23527 0.93461 1.05687 1.07723 1.85418 1.04617 1.72999 1.20209 1.22814 0.91508 1.44497 1.09687 0.90992 1.24998 0.99614 0.94527 0.94446 1.70006 1.35564 1.35315 1.09344 0.86219 0.82731 0.78476 0.78045 1.19944 1.20791 1.19935 1.46122 1.67904 1.14356 1.09587 1.21214 0.77903 0.87916 0.84805 1.90718 1.49031 1.15902 1.84636 1.21206 1.04351 0.92117 0.84405 1.47795 1.15517 1.42405 1.28085 1.22172 0.87617 0.92179 0.99942 1.22610 0.97021 0.98010 0.99125 1.22301 1.00008 0.98347 0.98646 1.20955 0.83123 0.82588 0.82230 1.90730 1.22950 1.52961 1.74091 0.91931 0.91645 0.91041 0.90824 0.89933 0.76821 0.89255 0.89270 0.92086 0.76109 0.86864 0.86876 0.90626 0.90057 0.89662 0.89040 0.87944 0.87731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 9.48 37.16 0.35 -0.98 16 2 C 0.13 1.14 2.73 -67.92 -0.19 0.95 16 3 H 0.09 0.94 7.58 -51.93 -0.39 0.54 16 4 C 0.11 1.15 5.23 -4.04 -0.02 1.13 16 5 N -0.74 -8.78 5.39 -60.30 -0.32 -9.11 16 6 C 0.53 9.25 7.85 -10.99 -0.09 9.17 16 7 O -0.52 -11.14 15.86 5.55 0.09 -11.05 16 8 C -0.15 -2.93 6.16 36.00 0.22 -2.71 16 9 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 10 C -0.54 -14.94 9.50 30.94 0.29 -14.64 16 11 H 0.07 1.88 7.80 -52.49 -0.41 1.47 16 12 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 13 N -0.87 -25.75 13.22 55.49 0.73 -25.02 16 14 Si 0.92 20.97 29.55 -169.99 -5.02 15.95 16 15 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 18 N -0.73 -5.44 4.52 -53.80 -0.24 -5.69 16 19 C 0.50 4.60 7.86 -10.99 -0.09 4.51 16 20 O -0.53 -6.92 16.09 5.55 0.09 -6.83 16 21 C 0.11 0.73 6.41 -5.20 -0.03 0.69 16 22 N -0.60 -4.83 2.42 -173.68 -0.42 -5.25 16 23 C 0.10 0.53 7.36 -3.03 -0.02 0.51 16 24 C -0.13 -0.55 7.19 -25.00 -0.18 -0.73 16 25 C -0.15 -0.90 6.86 -26.74 -0.18 -1.09 16 26 C 0.52 5.28 8.02 -10.86 -0.09 5.20 16 27 O -0.53 -7.60 17.59 5.56 0.10 -7.51 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.40 3.82 8.14 -40.82 -0.33 3.49 16 34 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 35 H 0.09 1.54 8.14 -51.92 -0.42 1.12 16 36 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 37 H 0.40 2.29 8.61 -40.82 -0.35 1.94 16 38 H 0.11 0.76 7.92 -51.93 -0.41 0.34 16 39 H 0.11 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 41 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.08 0.42 8.14 -51.92 -0.42 -0.01 16 43 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 44 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 399.03 15.07 6.01 6.01 Total: -1.00 -39.18 399.03 -8.27 -47.45 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -6.95 Total: 0.83 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: -0.11 Total: 3.98 kcal Atomic # 7 Polarization: -44.80 SS G_CDS: -0.25 Total: -45.06 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: 0.28 Total: -25.39 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -39.18 -8.27 -47.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001295425017.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.810 kcal (2) G-P(sol) polarization free energy of solvation -39.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds