Wall clock time and date at job start Wed Apr 1 2020 02:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47516 * 2 1 4 4 C 1.53007 * 109.47211 * 240.00061 * 2 1 3 5 5 N 1.46497 * 109.47109 * 185.00004 * 4 2 1 6 6 C 1.34772 * 120.00091 * 180.02562 * 5 4 2 7 7 O 1.21287 * 119.99982 * 359.97438 * 6 5 4 8 8 C 1.50698 * 120.00104 * 180.02562 * 6 5 4 9 9 S 1.81008 * 109.47037 * 179.97438 * 8 6 5 10 10 C 1.76200 * 99.99834 * 179.97438 * 9 8 6 11 11 H 1.07994 * 120.00330 * 359.97438 * 10 9 8 12 12 C 1.38801 * 120.00032 * 180.02562 * 10 9 8 13 13 N 1.31637 * 119.99739 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00425 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.46855 * 59.99429 * 14 12 10 16 16 H 1.48492 * 109.47419 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.46821 * 299.99555 * 14 12 10 18 18 N 1.46506 * 109.47262 * 120.00338 * 2 1 3 19 19 C 1.34777 * 119.99873 * 275.00296 * 18 2 1 20 20 O 1.21284 * 119.99754 * 359.97438 * 19 18 2 21 21 C 1.50696 * 120.00137 * 179.97438 * 19 18 2 22 22 N 1.46500 * 109.47324 * 179.97438 * 21 19 18 23 23 C 1.46763 * 124.34794 * 269.72333 * 22 21 19 24 24 C 1.54656 * 105.38122 * 162.85439 * 23 22 21 25 25 C 1.54635 * 101.68488 * 25.76417 * 24 23 22 26 26 C 1.34420 * 124.34958 * 90.02190 * 22 21 19 27 27 O 1.21276 * 124.94100 * 0.43203 * 26 22 21 28 28 H 1.09002 * 109.46901 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47093 * 299.99896 * 1 2 3 30 30 H 1.09002 * 109.47121 * 59.99683 * 1 2 3 31 31 H 1.08993 * 109.47014 * 305.00023 * 4 2 1 32 32 H 1.08997 * 109.46860 * 65.00150 * 4 2 1 33 33 H 0.97004 * 119.99938 * 359.97438 * 5 4 2 34 34 H 1.08999 * 109.47462 * 299.99500 * 8 6 5 35 35 H 1.08997 * 109.47264 * 60.00065 * 8 6 5 36 36 H 0.96998 * 120.00046 * 180.02562 * 13 12 10 37 37 H 0.96995 * 120.00050 * 94.72411 * 18 2 1 38 38 H 1.09004 * 109.47043 * 299.99732 * 21 19 18 39 39 H 1.09000 * 109.46978 * 59.99653 * 21 19 18 40 40 H 1.08995 * 110.24965 * 281.98323 * 23 22 21 41 41 H 1.09007 * 110.24686 * 43.98760 * 23 22 21 42 42 H 1.09007 * 111.19714 * 267.59934 * 24 23 22 43 43 H 1.08996 * 110.82802 * 143.77877 * 24 23 22 44 44 H 1.08997 * 110.48669 * 216.30904 * 25 24 23 45 45 H 1.09001 * 110.59425 * 93.72341 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5000 -0.8264 -1.1906 6 6 4.1731 -1.4282 -2.1912 7 8 3.5700 -1.8832 -3.1400 8 6 5.6749 -1.5369 -2.1305 9 16 6.2783 -2.3900 -3.6085 10 6 8.0101 -2.3770 -3.2837 11 1 8.3863 -1.9239 -2.3785 12 6 8.8908 -2.9483 -4.1917 13 7 8.4322 -3.5002 -5.2953 14 14 10.7266 -2.9353 -3.8471 15 1 10.9975 -3.6603 -2.5797 16 1 11.4444 -3.6034 -4.9622 17 1 11.1974 -1.5322 -3.7251 18 7 2.0184 -0.6907 1.1962 19 6 2.1470 -0.0184 2.3572 20 8 1.8589 1.1585 2.4115 21 6 2.6488 -0.7289 3.5877 22 7 2.6987 0.2125 4.7091 23 6 3.8672 1.0322 5.0507 24 6 3.3294 2.1468 5.9782 25 6 2.0780 1.4717 6.5861 26 6 1.6822 0.4323 5.5606 27 8 0.6047 -0.1222 5.5139 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6054 -1.7197 -1.2952 32 1 1.7517 -0.1583 -2.1370 33 1 3.9824 -0.4621 -0.4319 34 1 6.1099 -0.5385 -2.0839 35 1 5.9629 -2.1005 -1.2431 36 1 9.0476 -3.8998 -5.9297 37 1 2.2453 -1.6328 1.1535 38 1 1.9759 -1.5508 3.8325 39 1 3.6480 -1.1215 3.3986 40 1 4.6110 0.4300 5.5723 41 1 4.2985 1.4685 4.1496 42 1 3.0554 3.0352 5.4090 43 1 4.0563 2.3906 6.7530 44 1 1.2783 2.2001 6.7193 45 1 2.3221 0.9965 7.5362 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001295425017.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:04:26 Heat of formation + Delta-G solvation = -138.531737 kcal Electronic energy + Delta-G solvation = -27002.457753 eV Core-core repulsion = 22951.837600 eV Total energy + Delta-G solvation = -4050.620153 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.68388 -40.87734 -40.21059 -37.64285 -37.27639 -34.86017 -34.56457 -33.94334 -32.33934 -30.82197 -28.46828 -28.37315 -27.72841 -26.82701 -23.17372 -22.72279 -21.78345 -21.68346 -20.48690 -19.83820 -18.67221 -18.11134 -17.73345 -17.46086 -17.34800 -16.86646 -16.82250 -16.51764 -16.33528 -15.91043 -15.67147 -15.04534 -14.86807 -14.72305 -14.62503 -14.49761 -14.22187 -13.92914 -13.84391 -13.74585 -13.35542 -13.27239 -13.15533 -13.06212 -12.94814 -12.85083 -12.61003 -12.29530 -12.12513 -11.90847 -11.73298 -11.23305 -11.11490 -10.99480 -10.92560 -10.26494 -10.25244 -10.17523 -9.76481 -8.65033 -8.33228 -6.11074 1.27672 1.39066 1.44981 1.47965 1.52762 1.57349 1.60938 1.85703 2.20107 2.28978 2.35829 3.00979 3.33163 3.42225 3.52081 3.63381 3.75659 3.94775 4.02310 4.06373 4.14608 4.21179 4.23792 4.31548 4.31637 4.52702 4.54172 4.66834 4.67243 4.71069 4.72515 4.88387 4.91613 5.08114 5.17021 5.22963 5.34332 5.39843 5.43088 5.43428 6.04606 6.20906 6.41923 6.45202 7.06361 7.08185 7.16110 7.21429 8.75514 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.013104 B = 0.002117 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.320290 B =13222.573461 C =14968.724675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.145 3.855 3 H 0.086 0.914 4 C 0.118 3.882 5 N -0.712 5.712 6 C 0.536 3.464 7 O -0.563 6.563 8 C -0.130 4.130 9 S -0.152 6.152 10 C -0.546 4.546 11 H 0.084 0.916 12 C 0.012 3.988 13 N -0.911 5.911 14 Si 0.997 3.003 15 H -0.261 1.261 16 H -0.281 1.281 17 H -0.263 1.263 18 N -0.715 5.715 19 C 0.497 3.503 20 O -0.570 6.570 21 C 0.101 3.899 22 N -0.605 5.605 23 C 0.098 3.902 24 C -0.122 4.122 25 C -0.149 4.149 26 C 0.505 3.495 27 O -0.587 6.587 28 H 0.070 0.930 29 H 0.047 0.953 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.413 0.587 34 H 0.107 0.893 35 H 0.114 0.886 36 H 0.271 0.729 37 H 0.416 0.584 38 H 0.114 0.886 39 H 0.151 0.849 40 H 0.103 0.897 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.122 0.878 44 H 0.099 0.901 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.270 10.138 25.881 29.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.040 3.960 3 H 0.104 0.896 4 C -0.006 4.006 5 N -0.366 5.366 6 C 0.322 3.678 7 O -0.441 6.441 8 C -0.281 4.281 9 S 0.076 5.924 10 C -0.693 4.693 11 H 0.102 0.898 12 C -0.192 4.192 13 N -0.548 5.548 14 Si 0.819 3.181 15 H -0.185 1.185 16 H -0.206 1.206 17 H -0.187 1.187 18 N -0.369 5.369 19 C 0.283 3.717 20 O -0.449 6.449 21 C -0.025 4.025 22 N -0.337 5.337 23 C -0.024 4.024 24 C -0.160 4.160 25 C -0.189 4.189 26 C 0.295 3.705 27 O -0.468 6.468 28 H 0.089 0.911 29 H 0.066 0.934 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.250 0.750 34 H 0.125 0.875 35 H 0.132 0.868 36 H 0.080 0.920 37 H 0.253 0.747 38 H 0.132 0.868 39 H 0.169 0.831 40 H 0.121 0.879 41 H 0.098 0.902 42 H 0.093 0.907 43 H 0.140 0.860 44 H 0.118 0.882 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.996 9.817 24.113 28.261 hybrid contribution 1.587 0.097 0.804 1.781 sum -9.409 9.914 24.916 28.419 Atomic orbital electron populations 1.22053 0.93536 1.03239 1.02684 1.21047 0.95170 0.97046 0.82780 0.89636 1.21683 0.79535 1.01785 0.97630 1.45680 1.07563 1.59942 1.23422 1.20029 0.88855 0.76924 0.81990 1.90713 1.70388 1.48416 1.34560 1.23368 0.94661 1.05723 1.04331 1.85605 1.05813 1.75004 1.26016 1.23168 0.91690 1.44359 1.10115 0.89804 1.26127 1.05179 0.93876 0.94049 1.70178 1.37443 1.36541 1.10621 0.85016 0.75804 0.79032 0.78235 1.18502 1.20625 1.18731 1.46035 1.67171 1.14818 1.08916 1.21654 0.77066 0.87432 0.85575 1.90705 1.50997 1.17845 1.85307 1.21415 1.06329 0.91672 0.83040 1.48035 1.15869 1.42269 1.27555 1.22439 0.87041 0.92516 1.00369 1.22646 0.96706 0.97104 0.99497 1.22359 1.00711 0.97323 0.98500 1.21749 0.82681 0.82805 0.83259 1.90685 1.25166 1.55180 1.75780 0.91055 0.93427 0.90061 0.90395 0.90316 0.74997 0.87484 0.86798 0.92048 0.74709 0.86815 0.83119 0.87908 0.90236 0.90709 0.85959 0.88232 0.85582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 9.48 71.98 0.68 -1.75 16 2 C 0.14 2.27 2.73 44.99 0.12 2.39 16 3 H 0.09 1.59 7.58 -2.39 -0.02 1.57 16 4 C 0.12 2.18 5.23 86.38 0.45 2.64 16 5 N -0.71 -15.29 5.39 -463.07 -2.49 -17.78 16 6 C 0.54 17.95 7.85 87.66 0.69 18.63 16 7 O -0.56 -24.36 15.86 -3.05 -0.05 -24.41 16 8 C -0.13 -4.75 6.16 71.24 0.44 -4.31 16 9 S -0.15 -8.11 20.57 -56.49 -1.16 -9.27 16 10 C -0.55 -30.14 9.50 67.95 0.65 -29.50 16 11 H 0.08 4.25 7.80 -2.91 -0.02 4.23 16 12 C 0.01 0.69 5.49 84.86 0.47 1.16 16 13 N -0.91 -55.01 13.22 21.65 0.29 -54.73 16 14 Si 1.00 42.36 29.55 68.60 2.03 44.39 16 15 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 16 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 17 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 18 N -0.72 -9.44 4.52 -442.52 -2.00 -11.44 16 19 C 0.50 8.57 7.86 87.66 0.69 9.25 16 20 O -0.57 -14.75 16.09 -3.04 -0.05 -14.80 16 21 C 0.10 1.21 6.41 85.63 0.55 1.76 16 22 N -0.61 -8.78 2.42 -821.98 -1.99 -10.77 16 23 C 0.10 0.74 7.36 86.89 0.64 1.38 16 24 C -0.12 -0.74 7.19 31.72 0.23 -0.51 16 25 C -0.15 -1.56 6.86 30.59 0.21 -1.35 16 26 C 0.51 10.05 8.02 87.90 0.70 10.75 16 27 O -0.59 -17.40 17.59 -3.02 -0.05 -17.45 16 28 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.08 1.10 8.14 -2.39 -0.02 1.09 16 31 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.41 6.62 8.14 -92.70 -0.75 5.86 16 34 H 0.11 3.56 8.14 -2.40 -0.02 3.54 16 35 H 0.11 3.62 8.14 -2.40 -0.02 3.60 16 36 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 37 H 0.42 3.68 8.61 -92.71 -0.80 2.88 16 38 H 0.11 1.39 7.92 -2.38 -0.02 1.37 16 39 H 0.15 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 41 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 42 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 43 H 0.12 0.01 8.14 -2.39 -0.02 -0.01 16 44 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.13 0.75 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -89.39 399.03 0.50 -88.89 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -0.53 Total: 16.81 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: 6.52 Total: 10.56 kcal Atomic # 7 Polarization: -88.52 SS G_CDS: -6.20 Total: -94.71 kcal Atomic # 8 Polarization: -56.51 SS G_CDS: -0.15 Total: -56.66 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Atomic # 16 Polarization: -8.11 SS G_CDS: -1.16 Total: -9.27 kcal Total: -89.39 0.50 -88.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001295425017.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.642 kcal (2) G-P(sol) polarization free energy of solvation -89.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds