Wall clock time and date at job start Wed Apr 1 2020 01:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 5 5 N 1.46505 * 109.47578 * 174.99814 * 4 2 1 6 6 C 1.34776 * 120.00162 * 180.02562 * 5 4 2 7 7 O 1.21280 * 119.99923 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99815 * 180.02562 * 6 5 4 9 9 C 1.52996 * 110.85518 * 303.78785 * 8 6 5 10 10 C 1.54478 * 110.96489 * 180.02562 * 8 6 5 11 11 N 1.46766 * 105.47258 * 267.29419 * 10 8 6 12 12 C 1.34421 * 111.30233 * 342.98598 * 11 10 8 13 13 O 1.21274 * 124.94285 * 180.40640 * 12 11 10 14 14 C 1.51283 * 110.11201 * 0.40777 * 12 11 10 15 15 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 16 16 C 1.34777 * 120.00033 * 84.99600 * 15 2 1 17 17 O 1.21287 * 119.99681 * 0.02562 * 16 15 2 18 18 C 1.50696 * 120.00198 * 180.02562 * 16 15 2 19 19 S 1.81001 * 109.47298 * 180.02562 * 18 16 15 20 20 C 1.76197 * 99.99966 * 180.02562 * 19 18 16 21 21 H 1.08001 * 120.00275 * 0.02562 * 20 19 18 22 22 C 1.38798 * 120.00061 * 180.02562 * 20 19 18 23 23 N 1.31633 * 120.00276 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 119.99960 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.46864 * 90.00181 * 24 22 20 26 26 H 1.48503 * 109.47089 * 210.00464 * 24 22 20 27 27 H 1.48498 * 109.47128 * 330.00364 * 24 22 20 28 28 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 31 31 H 1.09001 * 109.47359 * 295.00205 * 4 2 1 32 32 H 1.09002 * 109.46906 * 55.00224 * 4 2 1 33 33 H 0.96998 * 119.99536 * 0.02562 * 5 4 2 34 34 H 1.09002 * 109.46932 * 59.29941 * 9 8 6 35 35 H 1.09002 * 109.46954 * 179.30085 * 9 8 6 36 36 H 1.09000 * 109.47489 * 299.30071 * 9 8 6 37 37 H 1.08991 * 110.25316 * 26.29663 * 10 8 6 38 38 H 1.08996 * 110.24668 * 148.29809 * 10 8 6 39 39 H 0.97002 * 124.35271 * 162.96432 * 11 10 8 40 40 H 1.08999 * 110.48499 * 257.56973 * 14 12 11 41 41 H 1.09005 * 110.48225 * 134.92911 * 14 12 11 42 42 H 0.96992 * 120.00062 * 265.00053 * 15 2 1 43 43 H 1.08997 * 109.47364 * 300.00354 * 18 16 15 44 44 H 1.09001 * 109.46822 * 60.00123 * 18 16 15 45 45 H 0.96994 * 120.00398 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2491 5 7 3.5001 -0.8264 1.1905 6 6 4.1731 -1.4292 2.1905 7 8 3.5700 -1.8842 3.1393 8 6 5.6751 -1.5369 2.1304 9 6 6.1198 -2.2400 0.8464 10 6 6.2276 -2.2624 3.3772 11 7 6.5454 -1.2007 4.3394 12 6 6.6175 -0.0012 3.7368 13 8 6.8719 1.0436 4.2976 14 6 6.3352 -0.1444 2.2575 15 7 2.0184 -0.6906 -1.1962 16 6 2.1470 -0.0182 -2.3572 17 8 1.8589 1.1587 -2.4114 18 6 2.6488 -0.7286 -3.5878 19 16 2.7105 0.4347 -4.9731 20 6 3.3122 -0.6308 -6.2409 21 1 3.5201 -1.6676 -6.0213 22 6 3.5188 -0.1377 -7.5217 23 7 3.9679 -0.9338 -8.4690 24 14 3.1585 1.6554 -7.9017 25 1 4.3782 2.4672 -7.6606 26 1 2.7488 1.7875 -9.3230 27 1 2.0619 2.1367 -7.0237 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 1.7517 -0.1584 2.1369 32 1 1.6055 -1.7198 1.2950 33 1 3.9825 -0.4622 0.4318 34 1 5.7632 -1.6787 -0.0173 35 1 7.2081 -2.2945 0.8202 36 1 5.7048 -3.2476 0.8214 37 1 5.4727 -2.9317 3.7897 38 1 7.1279 -2.8207 3.1207 39 1 6.6850 -1.3457 5.2883 40 1 7.2632 -0.1086 1.6868 41 1 5.6501 0.6346 1.9228 42 1 2.2491 -1.6316 -1.1527 43 1 3.6479 -1.1211 -3.3988 44 1 1.9759 -1.5504 -3.8327 45 1 4.1119 -0.5894 -9.3642 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001298739753.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:57:09 Heat of formation + Delta-G solvation = -117.841308 kcal Electronic energy + Delta-G solvation = -27658.393740 eV Core-core repulsion = 23608.670791 eV Total energy + Delta-G solvation = -4049.722949 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.52134 -39.90007 -39.22627 -36.98525 -36.38669 -34.30254 -33.15839 -32.49914 -31.57143 -29.00737 -28.82882 -26.95507 -26.56369 -25.67686 -23.28319 -21.98739 -21.03811 -20.57501 -20.03503 -18.28526 -17.89103 -17.34214 -16.79868 -16.73053 -16.20724 -15.86957 -15.42465 -15.20154 -15.14502 -14.98964 -14.55774 -14.35220 -14.10745 -13.76478 -13.55913 -13.29847 -13.24429 -13.15036 -13.02278 -12.85091 -12.75834 -12.54514 -12.24345 -12.20107 -12.05470 -11.60013 -11.33669 -11.29746 -11.06153 -10.67602 -10.27542 -10.23214 -9.92025 -9.68824 -9.55306 -9.50735 -9.21658 -9.05712 -8.57699 -6.99262 -6.34857 -4.07388 2.10708 2.20357 2.55701 2.68194 2.82675 2.95677 3.20944 3.28572 3.45367 3.56060 3.64424 3.84591 4.01776 4.23143 4.27346 4.31743 4.53977 4.65056 4.76318 4.94039 4.96919 5.02949 5.04357 5.07428 5.11392 5.14081 5.20577 5.24610 5.30825 5.36137 5.46986 5.58313 5.65019 5.76624 5.87337 5.91134 6.04675 6.34755 6.37924 6.58150 6.99069 7.43608 7.71255 7.83835 7.88026 8.33779 8.35338 9.11241 10.74302 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.013710 B = 0.002440 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.797370 B =11472.642282 C =12409.208710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.132 3.868 3 H 0.096 0.904 4 C 0.112 3.888 5 N -0.723 5.723 6 C 0.529 3.471 7 O -0.532 6.532 8 C -0.098 4.098 9 C -0.138 4.138 10 C 0.119 3.881 11 N -0.727 5.727 12 C 0.520 3.480 13 O -0.532 6.532 14 C -0.147 4.147 15 N -0.736 5.736 16 C 0.532 3.468 17 O -0.514 6.514 18 C -0.125 4.125 19 S -0.140 6.140 20 C -0.522 4.522 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.880 5.880 24 Si 0.856 3.144 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.406 0.594 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.413 0.587 40 H 0.121 0.879 41 H 0.107 0.893 42 H 0.400 0.600 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.998 -5.853 23.094 23.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.027 3.973 3 H 0.114 0.886 4 C -0.012 4.012 5 N -0.376 5.376 6 C 0.314 3.686 7 O -0.408 6.408 8 C -0.102 4.102 9 C -0.196 4.196 10 C -0.006 4.006 11 N -0.382 5.382 12 C 0.306 3.694 13 O -0.408 6.408 14 C -0.187 4.187 15 N -0.391 5.391 16 C 0.318 3.682 17 O -0.388 6.388 18 C -0.276 4.276 19 S 0.086 5.914 20 C -0.670 4.670 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.516 5.516 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.159 1.159 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.242 0.758 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.116 0.884 38 H 0.102 0.898 39 H 0.251 0.749 40 H 0.139 0.861 41 H 0.125 0.875 42 H 0.234 0.766 43 H 0.115 0.885 44 H 0.116 0.884 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.228 -3.654 23.664 23.976 hybrid contribution 0.607 -1.194 -0.403 1.399 sum 1.835 -4.849 23.261 23.832 Atomic orbital electron populations 1.22115 0.93992 1.02652 1.03284 1.21154 0.95167 0.97884 0.83141 0.88592 1.21754 0.79590 1.01788 0.98039 1.45945 1.07914 1.59789 1.23945 1.20085 0.88876 0.77538 0.82121 1.90721 1.69754 1.47438 1.32872 1.21762 0.92547 0.97292 0.98594 1.21831 1.02828 1.01012 0.93923 1.22076 1.00899 0.90103 0.87532 1.46141 1.72219 1.08343 1.11506 1.20761 0.75616 0.83320 0.89710 1.90780 1.49044 1.29855 1.71146 1.22525 1.04026 0.96575 0.95586 1.46118 1.69473 1.14098 1.09441 1.20328 0.76902 0.87242 0.83770 1.90720 1.48101 1.15721 1.84288 1.23284 1.04420 1.03569 0.96287 1.84829 1.87290 1.16542 1.02737 1.22297 1.50564 0.98721 0.95413 0.89389 1.24716 0.93330 0.98288 0.94963 1.69931 1.43264 1.35818 1.02583 0.86741 0.81104 0.84810 0.79228 1.19186 1.19928 1.15934 0.91438 0.92089 0.91021 0.89839 0.90485 0.75792 0.90817 0.90390 0.90893 0.88431 0.89828 0.74853 0.86099 0.87508 0.76584 0.88528 0.88450 0.91886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.48 37.16 0.35 -1.03 16 2 C 0.13 1.14 2.73 -67.93 -0.19 0.96 16 3 H 0.10 0.99 7.58 -51.93 -0.39 0.60 16 4 C 0.11 0.82 5.23 -4.04 -0.02 0.80 16 5 N -0.72 -5.10 5.21 -60.29 -0.31 -5.42 16 6 C 0.53 4.38 6.51 -10.98 -0.07 4.31 16 7 O -0.53 -6.17 15.53 5.56 0.09 -6.08 16 8 C -0.10 -0.58 0.85 -154.03 -0.13 -0.71 16 9 C -0.14 -0.54 8.35 37.16 0.31 -0.23 16 10 C 0.12 0.66 6.68 -3.12 -0.02 0.64 16 11 N -0.73 -5.37 6.24 -59.21 -0.37 -5.74 16 12 C 0.52 5.24 8.43 -10.86 -0.09 5.15 16 13 O -0.53 -7.73 18.03 5.56 0.10 -7.63 16 14 C -0.15 -1.00 5.96 -26.74 -0.16 -1.16 16 15 N -0.74 -7.17 4.52 -53.81 -0.24 -7.41 16 16 C 0.53 7.96 7.81 -10.99 -0.09 7.88 16 17 O -0.51 -9.77 15.52 5.55 0.09 -9.68 16 18 C -0.12 -2.13 6.16 36.00 0.22 -1.91 16 19 S -0.14 -3.33 18.55 -107.50 -1.99 -5.32 16 20 C -0.52 -14.37 10.04 30.94 0.31 -14.06 16 21 H 0.09 2.52 8.03 -52.49 -0.42 2.10 16 22 C 0.10 2.71 5.50 -17.43 -0.10 2.62 16 23 N -0.88 -25.79 13.97 55.49 0.78 -25.01 16 24 Si 0.86 21.09 27.74 -169.99 -4.71 16.37 16 25 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.24 -5.78 6.74 56.52 0.38 -5.40 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.41 2.55 7.42 -40.82 -0.30 2.25 16 34 H 0.07 0.29 7.46 -51.93 -0.39 -0.10 16 35 H 0.08 0.22 8.11 -51.93 -0.42 -0.20 16 36 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.10 0.61 7.02 -51.93 -0.36 0.25 16 38 H 0.08 0.28 7.88 -51.93 -0.41 -0.13 16 39 H 0.41 2.55 8.96 -40.82 -0.37 2.18 16 40 H 0.12 0.60 7.88 -51.93 -0.41 0.19 16 41 H 0.11 0.76 7.84 -51.93 -0.41 0.35 16 42 H 0.40 2.95 8.60 -40.82 -0.35 2.60 16 43 H 0.10 1.48 8.14 -51.92 -0.42 1.06 16 44 H 0.10 1.57 8.14 -51.92 -0.42 1.15 16 45 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 390.24 15.07 5.88 5.88 Total: -1.00 -37.25 390.24 -7.15 -44.40 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -6.77 Total: 2.39 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: 0.33 Total: 3.24 kcal Atomic # 7 Polarization: -43.42 SS G_CDS: -0.15 Total: -43.58 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: 0.27 Total: -23.39 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.71 Total: 16.37 kcal Atomic # 16 Polarization: -3.33 SS G_CDS: -1.99 Total: -5.32 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -37.25 -7.15 -44.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001298739753.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.442 kcal (2) G-P(sol) polarization free energy of solvation -37.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds