Wall clock time and date at job start Wed Apr 1 2020 02:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 O 1.21277 * 119.99641 * 2 1 4 4 N 1.34772 * 120.00159 * 179.97438 * 2 1 3 5 5 C 1.46489 * 120.00144 * 180.02562 * 4 2 1 6 6 H 1.08996 * 109.47365 * 324.99834 * 5 4 2 7 7 C 1.53002 * 109.47335 * 85.00114 * 5 4 2 8 8 C 1.50703 * 109.47308 * 204.99695 * 5 4 2 9 9 O 1.21285 * 119.99538 * 0.02562 * 8 5 4 10 10 N 1.34776 * 120.00288 * 179.97438 * 8 5 4 11 11 C 1.47576 * 134.49232 * 4.96593 * 10 8 5 12 12 C 1.53944 * 86.11898 * 204.63820 * 11 10 8 13 13 C 1.47576 * 134.49310 * 184.96302 * 10 8 5 14 14 H 1.09000 * 113.86953 * 269.67406 * 13 10 8 15 15 C 1.53006 * 113.77240 * 41.05716 * 13 10 8 16 16 N 1.46500 * 109.47173 * 278.93405 * 15 13 10 17 17 C 1.34775 * 120.00072 * 184.79771 * 16 15 13 18 18 O 1.21283 * 119.99874 * 0.02562 * 17 16 15 19 19 C 1.50695 * 120.00136 * 180.02562 * 17 16 15 20 20 S 1.81004 * 109.47124 * 180.02562 * 19 17 16 21 21 C 1.76201 * 99.99926 * 179.97438 * 20 19 17 22 22 H 1.07999 * 119.99973 * 0.02562 * 21 20 19 23 23 C 1.38794 * 119.99614 * 179.97438 * 21 20 19 24 24 N 1.31625 * 120.00428 * 0.02562 * 23 21 20 25 25 Si 1.86808 * 119.99793 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46889 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.46805 * 120.00110 * 25 23 21 28 28 H 1.48498 * 109.47328 * 240.00038 * 25 23 21 29 29 H 1.08992 * 109.46939 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47093 * 300.00593 * 1 2 3 31 31 H 1.09001 * 109.46581 * 60.00085 * 1 2 3 32 32 H 0.97004 * 119.99568 * 0.02562 * 4 2 1 33 33 H 1.08996 * 109.47122 * 59.99572 * 7 5 4 34 34 H 1.09003 * 109.47460 * 179.97438 * 7 5 4 35 35 H 1.09000 * 109.46845 * 299.99872 * 7 5 4 36 36 H 1.08996 * 113.77216 * 90.33661 * 11 10 8 37 37 H 1.09003 * 113.87260 * 318.95406 * 11 10 8 38 38 H 1.08996 * 113.74669 * 222.04747 * 12 11 10 39 39 H 1.08999 * 113.83943 * 90.74663 * 12 11 10 40 40 H 1.09005 * 109.46391 * 38.93451 * 15 13 10 41 41 H 1.09000 * 109.46883 * 158.93020 * 15 13 10 42 42 H 0.96997 * 119.99825 * 4.79952 * 16 15 13 43 43 H 1.09003 * 109.47073 * 299.99851 * 19 17 16 44 44 H 1.09002 * 109.47534 * 60.00027 * 19 17 16 45 45 H 0.97007 * 120.00260 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 3.6459 -1.1671 0.0011 6 1 4.0095 -0.3255 -0.5884 7 6 4.1554 -1.0411 1.4383 8 6 4.1485 -2.4550 -0.5988 9 8 3.3605 -3.2904 -0.9889 10 7 5.4736 -2.6780 -0.7028 11 6 6.6820 -1.9529 -0.2646 12 6 7.4079 -2.6832 -1.4091 13 6 6.2990 -3.7455 -1.3005 14 1 6.5347 -4.5579 -0.6132 15 6 5.7833 -4.2391 -2.6538 16 7 4.6968 -5.1987 -2.4419 17 6 4.1510 -5.8418 -3.4930 18 8 4.5597 -5.6264 -4.6145 19 6 3.0330 -6.8284 -3.2751 20 16 2.5189 -7.5192 -4.8672 21 6 1.2413 -8.6074 -4.3304 22 1 0.9997 -8.6800 -3.2803 23 6 0.5448 -9.3704 -5.2572 24 7 0.8390 -9.2815 -6.5371 25 14 -0.8092 -10.5247 -4.6881 26 1 -0.9430 -10.4408 -3.2115 27 1 -2.0929 -10.1335 -5.3240 28 1 -0.4685 -11.9170 -5.0764 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 1.6959 -2.0072 0.0005 33 1 3.7918 -1.8827 2.0277 34 1 5.2454 -1.0416 1.4388 35 1 3.7919 -0.1096 1.8722 36 1 7.0294 -2.2378 0.7284 37 1 6.6221 -0.8731 -0.4007 38 1 8.3969 -3.0518 -1.1369 39 1 7.4025 -2.1380 -2.3529 40 1 5.4129 -3.3926 -3.2321 41 1 6.5948 -4.7232 -3.1972 42 1 4.3702 -5.3712 -1.5449 43 1 3.3794 -7.6324 -2.6255 44 1 2.1878 -6.3227 -2.8081 45 1 0.3524 -9.8151 -7.1849 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001298981851.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:05:24 Heat of formation + Delta-G solvation = -105.724395 kcal Electronic energy + Delta-G solvation = -27617.858024 eV Core-core repulsion = 23568.660504 eV Total energy + Delta-G solvation = -4049.197520 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.85188 -40.78364 -40.26570 -38.90173 -36.13802 -35.56840 -34.60454 -32.96463 -31.60977 -30.70539 -29.54195 -28.77621 -27.65007 -25.58124 -24.27029 -22.76276 -21.75634 -21.48792 -20.19899 -19.77518 -18.57106 -17.98873 -17.78568 -17.59370 -17.34265 -16.90189 -16.67296 -16.48537 -16.24698 -15.95648 -15.66714 -15.30041 -14.91919 -14.64541 -14.58255 -14.47219 -14.05614 -13.91866 -13.55249 -13.33190 -13.30188 -13.25680 -13.18229 -13.06396 -12.94905 -12.91487 -12.66223 -12.63557 -12.32237 -12.03104 -11.71060 -11.17397 -11.11317 -10.97731 -10.81021 -10.31174 -10.28846 -10.10676 -9.78575 -8.69248 -8.36379 -6.15028 1.24582 1.40342 1.41600 1.43481 1.47399 1.57312 1.60466 1.63701 2.21455 2.25652 2.36139 2.97437 3.19407 3.30319 3.48941 3.72522 3.82574 3.96502 3.98294 4.00977 4.07164 4.16227 4.23548 4.30276 4.43174 4.44725 4.46436 4.59934 4.61124 4.67537 4.69464 4.74962 4.92420 5.02872 5.03615 5.10437 5.27552 5.31733 5.39768 5.43485 6.18293 6.41219 6.46942 6.58324 6.96376 7.04443 7.11458 7.23263 8.73334 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.010711 B = 0.002655 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.473289 B =10544.124843 C =12523.568112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.511 3.489 3 O -0.592 6.592 4 N -0.713 5.713 5 C 0.129 3.871 6 H 0.101 0.899 7 C -0.148 4.148 8 C 0.525 3.475 9 O -0.562 6.562 10 N -0.642 5.642 11 C 0.100 3.900 12 C -0.129 4.129 13 C 0.123 3.877 14 H 0.125 0.875 15 C 0.119 3.881 16 N -0.700 5.700 17 C 0.534 3.466 18 O -0.570 6.570 19 C -0.126 4.126 20 S -0.148 6.148 21 C -0.547 4.547 22 H 0.080 0.920 23 C 0.013 3.987 24 N -0.911 5.911 25 Si 1.002 2.998 26 H -0.258 1.258 27 H -0.273 1.273 28 H -0.271 1.271 29 H 0.094 0.906 30 H 0.110 0.890 31 H 0.100 0.900 32 H 0.414 0.586 33 H 0.065 0.935 34 H 0.097 0.903 35 H 0.064 0.936 36 H 0.122 0.878 37 H 0.099 0.901 38 H 0.124 0.876 39 H 0.092 0.908 40 H 0.043 0.957 41 H 0.085 0.915 42 H 0.411 0.589 43 H 0.107 0.893 44 H 0.097 0.903 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.026 18.280 23.005 31.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.300 3.700 3 O -0.473 6.473 4 N -0.367 5.367 5 C 0.020 3.980 6 H 0.119 0.881 7 C -0.206 4.206 8 C 0.314 3.686 9 O -0.440 6.440 10 N -0.379 5.379 11 C -0.021 4.021 12 C -0.167 4.167 13 C 0.020 3.980 14 H 0.143 0.857 15 C -0.006 4.006 16 N -0.353 5.353 17 C 0.319 3.681 18 O -0.450 6.450 19 C -0.277 4.277 20 S 0.079 5.921 21 C -0.695 4.695 22 H 0.098 0.902 23 C -0.192 4.192 24 N -0.548 5.548 25 Si 0.823 3.177 26 H -0.181 1.181 27 H -0.198 1.198 28 H -0.196 1.196 29 H 0.113 0.887 30 H 0.129 0.871 31 H 0.118 0.882 32 H 0.252 0.748 33 H 0.084 0.916 34 H 0.115 0.885 35 H 0.083 0.917 36 H 0.140 0.860 37 H 0.117 0.883 38 H 0.142 0.858 39 H 0.111 0.889 40 H 0.061 0.939 41 H 0.103 0.897 42 H 0.247 0.753 43 H 0.125 0.875 44 H 0.115 0.885 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 12.486 18.939 20.816 30.788 hybrid contribution -1.854 -1.351 1.243 2.609 sum 10.632 17.589 22.059 30.150 Atomic orbital electron populations 1.21887 0.88453 1.06022 1.06215 1.21475 0.92155 0.82470 0.73864 1.90685 1.71799 1.32625 1.52161 1.46042 1.06104 1.09945 1.74579 1.20711 0.82186 0.95485 0.99579 0.88091 1.22087 1.03137 1.02992 0.92407 1.20534 0.81586 0.88334 0.78167 1.90738 1.55219 1.47773 1.50302 1.50335 1.03599 1.26596 1.57339 1.23604 0.79235 0.99265 0.99949 1.23557 0.98303 0.94886 0.99975 1.23387 0.88584 0.93593 0.92433 0.85743 1.21612 0.89567 0.91554 0.97836 1.45662 1.37433 1.42712 1.09520 1.19996 0.82528 0.80872 0.84679 1.90666 1.63250 1.66003 1.25038 1.23317 0.99818 1.00860 1.03705 1.85497 1.45924 1.52740 1.07902 1.23222 1.21704 1.27981 0.96573 0.90185 1.26158 1.00058 0.98504 0.94450 1.70191 1.41695 1.40554 1.02311 0.84872 0.76762 0.77175 0.78906 1.18148 1.19800 1.19637 0.88664 0.87124 0.88186 0.74783 0.91602 0.88479 0.91703 0.86048 0.88278 0.85751 0.88899 0.93899 0.89716 0.75250 0.87470 0.88462 0.91913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.07 10.39 71.24 0.74 -1.33 16 2 C 0.51 10.23 7.90 87.66 0.69 10.93 16 3 O -0.59 -16.17 16.76 -3.02 -0.05 -16.23 16 4 N -0.71 -13.18 4.95 -446.11 -2.21 -15.39 16 5 C 0.13 2.18 2.84 44.25 0.13 2.31 16 6 H 0.10 1.92 7.58 -2.39 -0.02 1.90 16 7 C -0.15 -1.64 9.35 71.98 0.67 -0.97 16 8 C 0.52 10.27 7.33 87.66 0.64 10.91 16 9 O -0.56 -15.39 14.19 -3.05 -0.04 -15.43 16 10 N -0.64 -8.38 3.47 -813.95 -2.82 -11.20 16 11 C 0.10 0.35 6.68 86.48 0.58 0.93 16 12 C -0.13 -0.59 7.86 31.25 0.25 -0.34 16 13 C 0.12 1.49 4.27 45.10 0.19 1.68 16 14 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 15 C 0.12 2.74 5.32 86.38 0.46 3.20 16 16 N -0.70 -20.74 4.54 -463.05 -2.10 -22.85 16 17 C 0.53 21.98 7.85 87.66 0.69 22.67 16 18 O -0.57 -28.35 15.86 -3.04 -0.05 -28.40 16 19 C -0.13 -5.55 6.16 71.23 0.44 -5.11 16 20 S -0.15 -8.64 20.57 -56.49 -1.16 -9.80 16 21 C -0.55 -32.51 9.50 67.95 0.65 -31.86 16 22 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 23 C 0.01 0.76 5.49 84.86 0.47 1.22 16 24 N -0.91 -57.19 13.22 21.65 0.29 -56.91 16 25 Si 1.00 44.66 29.55 68.60 2.03 46.69 16 26 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 27 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 28 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 29 H 0.09 0.88 7.91 -2.39 -0.02 0.86 16 30 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.41 7.35 7.63 -92.71 -0.71 6.65 16 33 H 0.06 0.72 8.14 -2.39 -0.02 0.71 16 34 H 0.10 0.55 6.03 -2.39 -0.01 0.54 16 35 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.12 -0.20 8.07 -2.39 -0.02 -0.22 16 37 H 0.10 0.19 8.13 -2.39 -0.02 0.17 16 38 H 0.12 -0.10 8.14 -2.39 -0.02 -0.12 16 39 H 0.09 0.61 8.10 -2.39 -0.02 0.60 16 40 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 41 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.41 10.75 7.45 -92.71 -0.69 10.06 16 43 H 0.11 4.25 8.14 -2.39 -0.02 4.23 16 44 H 0.10 4.13 8.14 -2.39 -0.02 4.11 16 45 H 0.27 15.72 8.31 -92.70 -0.77 14.95 16 Total: -1.00 -91.32 393.80 0.09 -91.23 By element: Atomic # 1 Polarization: 24.44 SS G_CDS: -0.37 Total: 24.06 kcal Atomic # 6 Polarization: 7.63 SS G_CDS: 6.59 Total: 14.22 kcal Atomic # 7 Polarization: -99.50 SS G_CDS: -6.85 Total: -106.34 kcal Atomic # 8 Polarization: -59.91 SS G_CDS: -0.14 Total: -60.06 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Atomic # 16 Polarization: -8.64 SS G_CDS: -1.16 Total: -9.80 kcal Total: -91.32 0.09 -91.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001298981851.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.495 kcal (2) G-P(sol) polarization free energy of solvation -91.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds