Wall clock time and date at job start Wed Apr 1 2020 02:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21284 * 119.99877 * 2 1 4 4 N 1.34769 * 120.00247 * 180.02562 * 2 1 3 5 5 C 1.46508 * 120.00252 * 179.97438 * 4 2 1 6 6 H 1.08997 * 109.46624 * 34.99993 * 5 4 2 7 7 C 1.52997 * 109.46943 * 275.00078 * 5 4 2 8 8 C 1.50695 * 109.47353 * 154.99828 * 5 4 2 9 9 O 1.21288 * 119.99674 * 0.02562 * 8 5 4 10 10 N 1.34778 * 120.00097 * 180.27820 * 8 5 4 11 11 C 1.47066 * 136.05515 * 354.76263 * 10 8 5 12 12 C 1.53503 * 87.98090 * 152.84534 * 11 10 8 13 13 C 1.47069 * 136.05663 * 174.39477 * 10 8 5 14 14 H 1.09005 * 113.46438 * 92.37873 * 13 10 8 15 15 C 1.52995 * 113.46670 * 321.93932 * 13 10 8 16 16 N 1.46507 * 109.46865 * 175.84960 * 15 13 10 17 17 C 1.34775 * 120.00016 * 184.95382 * 16 15 13 18 18 O 1.21286 * 119.99696 * 0.02562 * 17 16 15 19 19 C 1.50695 * 120.00185 * 179.97438 * 17 16 15 20 20 S 1.81001 * 109.47233 * 180.02562 * 19 17 16 21 21 C 1.76209 * 99.99965 * 180.02562 * 20 19 17 22 22 H 1.08005 * 119.99416 * 0.02562 * 21 20 19 23 23 C 1.38795 * 120.00106 * 180.02562 * 21 20 19 24 24 N 1.31628 * 119.99712 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 119.99989 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47316 * 60.00418 * 25 23 21 27 27 H 1.48501 * 109.47026 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.47310 * 300.00186 * 25 23 21 29 29 H 1.09004 * 109.47088 * 239.99617 * 1 2 3 30 30 H 1.08999 * 109.47841 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.47567 * 120.00182 * 1 2 3 32 32 H 0.97003 * 120.00354 * 359.97438 * 4 2 1 33 33 H 1.09001 * 109.46960 * 179.97438 * 7 5 4 34 34 H 1.08997 * 109.47391 * 299.99445 * 7 5 4 35 35 H 1.08999 * 109.47415 * 59.99768 * 7 5 4 36 36 H 1.08993 * 113.46896 * 267.62415 * 11 10 8 37 37 H 1.09004 * 113.46668 * 38.06965 * 11 10 8 38 38 H 1.08999 * 114.20275 * 139.65864 * 12 11 10 39 39 H 1.09002 * 114.20595 * 272.47930 * 12 11 10 40 40 H 1.09002 * 109.46980 * 295.84883 * 15 13 10 41 41 H 1.08999 * 109.47578 * 55.85549 * 15 13 10 42 42 H 0.96999 * 119.99680 * 4.96540 * 16 15 13 43 43 H 1.09001 * 109.47422 * 300.01327 * 19 17 16 44 44 H 1.09001 * 109.46584 * 60.00608 * 19 17 16 45 45 H 0.97002 * 119.99864 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1671 -0.0005 5 6 3.6459 -1.1671 -0.0011 6 1 4.0094 -0.3254 0.5884 7 6 4.1553 -1.0410 -1.4383 8 6 4.1485 -2.4549 0.5989 9 8 3.3605 -3.2906 0.9882 10 7 5.4737 -2.6757 0.7076 11 6 6.7007 -1.9816 0.2885 12 6 7.4166 -2.6472 1.4720 13 6 6.3290 -3.7133 1.3030 14 1 6.6015 -4.5046 0.6046 15 6 5.7963 -4.2534 2.6317 16 7 6.6568 -5.3448 3.0953 17 6 6.3245 -6.0422 4.1996 18 8 5.3129 -5.7667 4.8094 19 6 7.2092 -7.1652 4.6762 20 16 6.4988 -7.9008 6.1696 21 6 7.7006 -9.1469 6.4984 22 1 8.5543 -9.2590 5.8464 23 6 7.5500 -9.9841 7.5951 24 7 6.5092 -9.8477 8.3892 25 14 8.8236 -11.3055 7.9431 26 1 10.1496 -10.6714 8.1554 27 1 8.4349 -12.0587 9.1625 28 1 8.8993 -12.2365 6.7887 29 1 -0.3633 -0.5139 0.8900 30 1 -0.3635 1.0276 0.0005 31 1 -0.3634 -0.5139 -0.8900 32 1 1.6959 -2.0072 -0.0005 33 1 5.2453 -1.0406 -1.4386 34 1 3.7919 -1.8827 -2.0277 35 1 3.7918 -0.1096 -1.8723 36 1 7.0732 -2.3070 -0.6828 37 1 6.6367 -0.8969 0.3743 38 1 8.4248 -2.9946 1.2464 39 1 7.3495 -2.0892 2.4060 40 1 5.7917 -3.4543 3.3730 41 1 4.7813 -4.6254 2.4920 42 1 7.4657 -5.5652 2.6075 43 1 7.2839 -7.9244 3.8977 44 1 8.2023 -6.7753 4.8999 45 1 6.4042 -10.4326 9.1559 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001298981852.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:05:27 Heat of formation + Delta-G solvation = -71.200188 kcal Electronic energy + Delta-G solvation = -26825.671594 eV Core-core repulsion = 22777.971156 eV Total energy + Delta-G solvation = -4047.700438 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.30099 -40.06646 -39.02902 -38.27784 -35.39500 -34.46337 -32.42624 -32.30693 -30.44739 -29.92908 -29.07567 -27.70482 -25.47844 -25.04475 -23.45368 -22.34295 -20.83153 -20.55366 -19.45141 -18.07190 -17.82768 -17.16245 -16.91908 -16.57766 -16.20714 -15.72787 -15.39009 -15.18802 -15.16398 -14.80255 -14.60396 -14.08683 -13.99524 -13.88149 -13.67171 -13.42009 -13.11574 -13.03163 -12.84173 -12.78333 -12.55610 -12.49246 -12.44552 -12.19044 -11.94366 -11.75168 -11.05063 -11.03994 -11.00794 -10.76179 -10.35912 -10.20740 -9.82558 -9.62440 -9.42396 -9.25191 -9.06218 -8.90877 -8.23250 -6.49702 -6.21009 -3.91872 1.99217 2.09195 2.26542 2.80145 3.07868 3.10235 3.23471 3.27946 3.32284 3.69797 3.74283 3.87455 4.20691 4.35011 4.38993 4.46694 4.54285 4.63394 4.66294 4.77628 4.85313 4.87807 4.98077 5.02060 5.12650 5.13883 5.16761 5.25538 5.27450 5.46032 5.51636 5.56970 5.63176 5.71398 5.88486 5.89329 5.97681 6.12775 6.54814 7.05418 7.17800 7.59206 7.59991 7.67377 7.78338 8.35213 8.60940 9.23887 10.86349 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.022758 B = 0.001790 C = 0.001689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.050668 B =15641.851042 C =16569.178288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.516 3.484 3 O -0.548 6.548 4 N -0.716 5.716 5 C 0.131 3.869 6 H 0.114 0.886 7 C -0.159 4.159 8 C 0.539 3.461 9 O -0.524 6.524 10 N -0.638 5.638 11 C 0.097 3.903 12 C -0.152 4.152 13 C 0.126 3.874 14 H 0.102 0.898 15 C 0.115 3.885 16 N -0.736 5.736 17 C 0.532 3.468 18 O -0.514 6.514 19 C -0.152 4.152 20 S -0.060 6.060 21 C -0.536 4.536 22 H 0.072 0.928 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.412 0.588 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.068 0.932 41 H 0.084 0.916 42 H 0.397 0.603 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.286 19.718 -23.833 30.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.304 3.696 3 O -0.426 6.426 4 N -0.371 5.371 5 C 0.023 3.977 6 H 0.132 0.868 7 C -0.218 4.218 8 C 0.327 3.673 9 O -0.399 6.399 10 N -0.375 5.375 11 C -0.026 4.026 12 C -0.190 4.190 13 C 0.022 3.978 14 H 0.120 0.880 15 C -0.010 4.010 16 N -0.392 5.392 17 C 0.318 3.682 18 O -0.387 6.387 19 C -0.303 4.303 20 S 0.167 5.833 21 C -0.685 4.685 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.200 1.200 29 H 0.110 0.890 30 H 0.113 0.887 31 H 0.108 0.892 32 H 0.249 0.751 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.110 0.890 37 H 0.103 0.897 38 H 0.116 0.884 39 H 0.120 0.880 40 H 0.087 0.913 41 H 0.102 0.898 42 H 0.231 0.769 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.367 20.469 -22.451 30.567 hybrid contribution 2.157 -1.742 -0.793 2.884 sum -1.210 18.727 -23.244 29.874 Atomic orbital electron populations 1.21912 0.90967 1.05718 1.04706 1.20873 0.90849 0.82990 0.74924 1.90724 1.70853 1.31349 1.49660 1.45867 1.05571 1.10005 1.75630 1.20635 0.82306 0.96374 0.98434 0.86801 1.22156 1.01784 1.03567 0.94264 1.20191 0.80255 0.88327 0.78483 1.90774 1.53829 1.46482 1.48794 1.49561 1.03538 1.26794 1.57653 1.23085 0.81642 0.99101 0.98730 1.23570 0.98487 0.97409 0.99499 1.22869 0.87403 0.92655 0.94869 0.87999 1.21416 0.95943 0.90285 0.93308 1.45823 1.27734 1.35834 1.29798 1.20320 0.86126 0.82382 0.79400 1.90726 1.25887 1.67091 1.55004 1.23519 1.02220 0.98586 1.05944 1.85450 1.33650 1.39856 1.24385 1.22827 1.10762 1.19601 1.15272 0.90961 1.24995 0.96212 0.97371 0.95029 1.70010 1.27531 1.37865 1.14846 0.86218 0.80752 0.80629 0.77854 1.19950 1.20816 1.19950 0.88976 0.88733 0.89187 0.75094 0.90870 0.91740 0.90668 0.89019 0.89699 0.88418 0.88026 0.91348 0.89818 0.76889 0.89186 0.89155 0.92120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.89 10.32 36.00 0.37 -0.52 16 2 C 0.52 4.57 7.90 -10.99 -0.09 4.48 16 3 O -0.55 -6.86 16.75 5.55 0.09 -6.76 16 4 N -0.72 -5.93 4.95 -54.93 -0.27 -6.20 16 5 C 0.13 1.08 2.88 -69.08 -0.20 0.88 16 6 H 0.11 1.00 7.58 -51.93 -0.39 0.61 16 7 C -0.16 -0.95 9.36 37.16 0.35 -0.60 16 8 C 0.54 5.49 7.34 -10.99 -0.08 5.41 16 9 O -0.52 -7.37 15.45 5.55 0.09 -7.28 16 10 N -0.64 -5.04 3.54 -177.59 -0.63 -5.67 16 11 C 0.10 0.38 6.59 -8.50 -0.06 0.32 16 12 C -0.15 -0.70 8.00 -26.35 -0.21 -0.91 16 13 C 0.13 0.97 4.06 -72.53 -0.29 0.67 16 14 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 15 C 0.12 1.43 5.47 -4.04 -0.02 1.41 16 16 N -0.74 -9.58 5.55 -60.29 -0.33 -9.92 16 17 C 0.53 10.04 7.85 -10.99 -0.09 9.95 16 18 O -0.51 -12.13 15.86 5.55 0.09 -12.04 16 19 C -0.15 -3.04 6.16 36.00 0.22 -2.82 16 20 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 21 C -0.54 -15.28 9.50 30.94 0.29 -14.99 16 22 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 23 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 24 N -0.87 -26.28 13.22 55.49 0.73 -25.55 16 25 Si 0.92 21.37 29.55 -169.99 -5.02 16.35 16 26 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 29 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.09 0.48 8.12 -51.93 -0.42 0.06 16 31 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.41 3.15 7.79 -40.82 -0.32 2.83 16 33 H 0.07 0.30 6.19 -51.93 -0.32 -0.02 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 37 H 0.08 0.24 8.09 -51.93 -0.42 -0.18 16 38 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.10 0.56 7.93 -51.93 -0.41 0.15 16 40 H 0.07 0.92 7.88 -51.93 -0.41 0.51 16 41 H 0.08 1.35 7.15 -51.93 -0.37 0.98 16 42 H 0.40 3.65 8.48 -40.82 -0.35 3.30 16 43 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 44 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 45 H 0.27 7.58 8.31 -40.82 -0.34 7.25 16 LS Contribution 396.28 15.07 5.97 5.97 Total: -1.00 -40.03 396.28 -8.16 -48.19 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -6.76 Total: 1.47 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: 0.10 Total: 5.30 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: -0.50 Total: -47.33 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: 0.27 Total: -26.09 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -40.03 -8.16 -48.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001298981852.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.011 kcal (2) G-P(sol) polarization free energy of solvation -40.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds