Wall clock time and date at job start Wed Apr 1 2020 01:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47257 * 2 1 4 4 C 1.50702 * 109.47045 * 239.99806 * 2 1 3 5 5 H 1.07993 * 120.00148 * 240.00132 * 4 2 1 6 6 C 1.37885 * 119.99599 * 59.99849 * 4 2 1 7 7 N 1.31512 * 120.00251 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99622 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47046 * 60.00729 * 8 6 4 10 10 H 1.48506 * 109.46854 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47709 * 300.00298 * 8 6 4 12 12 N 1.46501 * 109.47320 * 120.00122 * 2 1 3 13 13 C 1.34773 * 120.00012 * 275.00133 * 12 2 1 14 14 O 1.21369 * 120.00030 * 359.97438 * 13 12 2 15 15 C 1.49331 * 119.99929 * 179.97438 * 13 12 2 16 16 O 1.21401 * 119.99921 * 359.97438 * 15 13 12 17 17 N 1.34773 * 119.99929 * 179.97438 * 15 13 12 18 18 C 1.40481 * 120.00059 * 179.97438 * 17 15 13 19 19 C 1.40331 * 126.11619 * 359.97368 * 18 17 15 20 20 N 1.30826 * 108.21255 * 179.97438 * 19 18 17 21 21 N 1.40051 * 108.36318 * 359.97438 * 20 19 18 22 22 C 1.46501 * 125.99312 * 179.97438 * 21 20 19 23 23 C 1.50697 * 109.47436 * 305.03022 * 22 21 20 24 24 C 1.38678 * 120.42012 * 89.99876 * 23 22 21 25 25 C 1.38625 * 118.42261 * 180.02562 * 24 23 22 26 26 C 1.38222 * 119.16079 * 359.97438 * 25 24 23 27 27 N 1.31852 * 120.76489 * 0.02562 * 26 25 24 28 28 C 1.31887 * 121.72468 * 359.97438 * 27 26 25 29 29 C 1.35224 * 108.01094 * 0.26722 * 21 20 19 30 30 H 1.09004 * 109.47051 * 299.99570 * 1 2 3 31 31 H 1.08998 * 109.47270 * 59.99667 * 1 2 3 32 32 H 1.09000 * 109.47257 * 179.97438 * 1 2 3 33 33 H 0.96998 * 120.00099 * 179.97438 * 7 6 4 34 34 H 0.96998 * 119.99850 * 94.99627 * 12 2 1 35 35 H 0.97006 * 120.00081 * 359.97438 * 17 15 13 36 36 H 1.08009 * 125.89322 * 0.02562 * 19 18 17 37 37 H 1.09004 * 109.47172 * 185.02721 * 22 21 20 38 38 H 1.08999 * 109.46656 * 65.03012 * 22 21 20 39 39 H 1.08003 * 120.78653 * 0.29511 * 24 23 22 40 40 H 1.07998 * 120.41681 * 180.02562 * 25 24 23 41 41 H 1.07997 * 119.61999 * 179.97438 * 26 25 24 42 42 H 1.08002 * 119.61624 * 180.02562 * 28 27 26 43 43 H 1.08001 * 126.17510 * 179.73182 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6531 -1.5885 -1.1314 6 6 1.6991 -0.2394 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 1.8278 -2.5198 -4.0082 10 1 1.8276 -0.4192 -5.2205 11 1 3.8073 -1.1191 -4.0079 12 7 2.0183 -0.6906 1.1961 13 6 2.1470 -0.0183 2.3571 14 8 1.8588 1.1594 2.4115 15 6 2.6443 -0.7225 3.5765 16 8 2.9322 -1.9006 3.5221 17 7 2.7735 -0.0500 4.7373 18 6 3.2408 -0.7125 5.8846 19 6 3.6077 -2.0645 5.9673 20 7 3.9898 -2.3102 7.1941 21 7 3.8811 -1.1270 7.9354 22 6 4.2091 -0.9667 9.3542 23 6 3.4391 -1.9769 10.1651 24 6 3.9786 -3.2281 10.4235 25 6 3.2342 -4.1255 11.1733 26 6 1.9882 -3.7460 11.6357 27 7 1.5067 -2.5475 11.3707 28 6 2.1867 -1.6684 10.6606 29 6 3.4142 -0.1600 7.1135 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 0.7093 1.1618 -3.4844 34 1 2.2490 -1.6318 1.1526 35 1 2.5438 0.8915 4.7806 36 1 3.5802 -2.7788 5.1575 37 1 3.9411 0.0392 9.6777 38 1 5.2780 -1.1225 9.4998 39 1 4.9572 -3.4953 10.0530 40 1 3.6234 -5.1084 11.3941 41 1 1.4018 -4.4394 12.2202 42 1 1.7597 -0.6960 10.4642 43 1 3.2169 0.8667 7.3845 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320576570.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:00 Heat of formation + Delta-G solvation = 54.545669 kcal Electronic energy + Delta-G solvation = -27895.338824 eV Core-core repulsion = 23749.939935 eV Total energy + Delta-G solvation = -4145.398889 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.64591 -40.55697 -39.96037 -38.03828 -35.53366 -34.97535 -34.17011 -32.56813 -32.40311 -31.26682 -29.52742 -29.07866 -26.85130 -25.33498 -24.50495 -24.02912 -23.03188 -21.72845 -21.32960 -20.35986 -19.50437 -18.32966 -17.79136 -17.41251 -16.88118 -16.33887 -16.22992 -16.00624 -15.57331 -15.25728 -15.08982 -14.91251 -14.45689 -14.18446 -14.01623 -13.75733 -13.54856 -13.47084 -13.21921 -13.05144 -12.91175 -12.47701 -12.14293 -11.79989 -11.22290 -11.08342 -11.00129 -10.95210 -10.92356 -10.79016 -10.36790 -10.28617 -10.26976 -9.97697 -9.61064 -9.54564 -9.15587 -9.06201 -8.61968 -8.13636 -7.86741 -6.17074 -4.26635 0.50654 0.83527 1.42344 1.91406 2.17988 2.79518 2.81671 3.25894 3.30556 3.33022 3.39342 3.76338 3.87881 4.03339 4.15934 4.21324 4.34876 4.46375 4.47566 4.56747 4.68621 4.86379 4.94399 5.09023 5.12745 5.16346 5.25288 5.38307 5.44056 5.64471 5.74638 6.02542 6.19925 6.63741 6.72347 6.75046 6.85211 7.02405 7.12565 7.22827 7.39228 7.49948 7.52325 7.62654 7.79035 7.98026 8.05431 8.44951 8.61790 8.85572 9.40277 10.88892 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.026730 B = 0.001768 C = 0.001748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.276579 B =15829.710792 C =16016.894132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.262 3.738 3 H 0.054 0.946 4 C -0.537 4.537 5 H 0.064 0.936 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.905 3.095 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.668 5.668 13 C 0.497 3.503 14 O -0.538 6.538 15 C 0.509 3.491 16 O -0.515 6.515 17 N -0.620 5.620 18 C 0.006 3.994 19 C 0.055 3.945 20 N -0.282 5.282 21 N -0.370 5.370 22 C 0.188 3.812 23 C -0.163 4.163 24 C -0.038 4.038 25 C -0.176 4.176 26 C 0.106 3.894 27 N -0.488 5.488 28 C 0.120 3.880 29 C 0.020 3.980 30 H 0.016 0.984 31 H 0.094 0.906 32 H 0.030 0.970 33 H 0.266 0.734 34 H 0.403 0.597 35 H 0.422 0.578 36 H 0.208 0.792 37 H 0.109 0.891 38 H 0.096 0.904 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.157 0.843 42 H 0.154 0.846 43 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.128 -4.086 27.914 28.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.161 3.839 3 H 0.072 0.928 4 C -0.575 4.575 5 H 0.082 0.918 6 C -0.136 4.136 7 N -0.521 5.521 8 Si 0.732 3.268 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.316 5.316 13 C 0.276 3.724 14 O -0.416 6.416 15 C 0.292 3.708 16 O -0.389 6.389 17 N -0.267 5.267 18 C -0.099 4.099 19 C -0.132 4.132 20 N -0.104 5.104 21 N -0.155 5.155 22 C 0.066 3.934 23 C -0.166 4.166 24 C -0.065 4.065 25 C -0.195 4.195 26 C -0.051 4.051 27 N -0.196 5.196 28 C -0.038 4.038 29 C -0.127 4.127 30 H 0.035 0.965 31 H 0.113 0.887 32 H 0.049 0.951 33 H 0.076 0.924 34 H 0.237 0.763 35 H 0.259 0.741 36 H 0.224 0.776 37 H 0.127 0.873 38 H 0.114 0.886 39 H 0.155 0.845 40 H 0.155 0.845 41 H 0.174 0.826 42 H 0.171 0.829 43 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 5.654 -4.571 28.912 29.813 hybrid contribution 0.776 -0.009 -1.734 1.899 sum 6.430 -4.580 27.179 28.302 Atomic orbital electron populations 1.22099 0.97829 0.99583 1.01204 1.18975 0.91449 0.94140 0.79352 0.92781 1.21156 1.32830 1.13493 0.90022 0.91771 1.24879 0.94697 0.94941 0.99090 1.69880 1.35671 1.22328 1.24173 0.86448 0.79214 0.79616 0.81497 1.20047 1.21112 1.20099 1.46489 1.61276 1.14557 1.09300 1.19618 0.81091 0.87227 0.84497 1.90727 1.50927 1.15261 1.84729 1.20808 0.78484 0.86979 0.84540 1.90605 1.48019 1.15647 1.84647 1.42502 1.63223 1.14370 1.06615 1.17782 1.11138 0.93569 0.87435 1.24595 0.98210 0.95337 0.95077 1.77376 1.23835 1.04998 1.04153 1.48177 1.51908 1.07007 1.08395 1.20404 0.99808 0.98668 0.74477 1.20846 0.97491 0.96909 1.01379 1.21524 0.99917 0.91863 0.93188 1.22190 0.96411 1.01101 0.99841 1.22870 0.93267 0.92935 0.95983 1.67740 1.35366 1.03041 1.13437 1.22683 0.90162 0.98737 0.92201 1.21810 1.04981 0.96051 0.89906 0.96455 0.88736 0.95085 0.92402 0.76282 0.74089 0.77619 0.87305 0.88616 0.84475 0.84457 0.82579 0.82858 0.80352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 9.26 37.16 0.34 -3.26 16 2 C 0.26 6.52 2.56 -69.08 -0.18 6.35 16 3 H 0.05 1.51 7.58 -51.93 -0.39 1.12 16 4 C -0.54 -14.07 8.73 -34.44 -0.30 -14.37 16 5 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.30 11.32 55.43 0.63 -23.68 16 8 Si 0.91 20.49 29.54 -169.99 -5.02 15.46 16 9 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 10 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 12 N -0.67 -14.14 5.06 -55.40 -0.28 -14.42 16 13 C 0.50 9.79 7.85 -11.64 -0.09 9.70 16 14 O -0.54 -11.63 16.14 5.48 0.09 -11.54 16 15 C 0.51 8.50 7.86 -11.64 -0.09 8.41 16 16 O -0.51 -9.09 13.63 5.45 0.07 -9.02 16 17 N -0.62 -8.36 5.46 -10.48 -0.06 -8.42 16 18 C 0.01 0.07 6.90 -83.96 -0.58 -0.51 16 19 C 0.06 0.77 10.84 -17.19 -0.19 0.58 16 20 N -0.28 -3.59 12.39 30.72 0.38 -3.21 16 21 N -0.37 -3.50 3.67 -62.33 -0.23 -3.73 16 22 C 0.19 1.07 6.66 -5.19 -0.03 1.03 16 23 C -0.16 -1.17 5.33 -104.48 -0.56 -1.73 16 24 C -0.04 -0.27 9.86 -39.28 -0.39 -0.66 16 25 C -0.18 -1.15 10.11 -39.44 -0.40 -1.55 16 26 C 0.11 0.81 11.18 -17.55 -0.20 0.61 16 27 N -0.49 -4.66 10.36 -13.26 -0.14 -4.80 16 28 C 0.12 0.97 10.86 -17.55 -0.19 0.78 16 29 C 0.02 0.18 11.49 -16.91 -0.19 -0.01 16 30 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 32 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 34 H 0.40 7.94 8.01 -40.82 -0.33 7.62 16 35 H 0.42 4.92 8.29 -40.82 -0.34 4.58 16 36 H 0.21 3.08 5.92 -52.48 -0.31 2.76 16 37 H 0.11 0.28 8.02 -51.93 -0.42 -0.14 16 38 H 0.10 0.43 8.10 -51.93 -0.42 0.01 16 39 H 0.14 0.81 8.06 -52.48 -0.42 0.38 16 40 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 41 H 0.16 0.78 8.06 -52.49 -0.42 0.36 16 42 H 0.15 0.93 8.06 -52.49 -0.42 0.50 16 43 H 0.18 0.94 8.06 -52.49 -0.42 0.51 16 LS Contribution 378.29 15.07 5.70 5.70 Total: -1.00 -33.04 378.29 -7.01 -40.06 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -5.02 Total: 10.53 kcal Atomic # 6 Polarization: 10.21 SS G_CDS: -3.14 Total: 7.07 kcal Atomic # 7 Polarization: -58.57 SS G_CDS: 0.30 Total: -58.26 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: 0.16 Total: -20.56 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.04 -7.01 -40.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320576570.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.601 kcal (2) G-P(sol) polarization free energy of solvation -33.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds