Wall clock time and date at job start Wed Apr 1 2020 01:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47257 * 2 1 4 4 C 1.50702 * 109.47045 * 239.99806 * 2 1 3 5 5 H 1.07993 * 120.00148 * 240.00132 * 4 2 1 6 6 C 1.37885 * 119.99599 * 59.99849 * 4 2 1 7 7 N 1.31512 * 120.00251 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99622 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47046 * 60.00729 * 8 6 4 10 10 H 1.48506 * 109.46854 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47709 * 300.00298 * 8 6 4 12 12 N 1.46501 * 109.47320 * 120.00122 * 2 1 3 13 13 C 1.34773 * 120.00012 * 275.00133 * 12 2 1 14 14 O 1.21369 * 120.00030 * 359.97438 * 13 12 2 15 15 C 1.49331 * 119.99929 * 179.97438 * 13 12 2 16 16 O 1.21401 * 119.99921 * 359.97438 * 15 13 12 17 17 N 1.34773 * 119.99929 * 179.97438 * 15 13 12 18 18 C 1.40481 * 120.00059 * 179.97438 * 17 15 13 19 19 C 1.40331 * 126.11619 * 359.97368 * 18 17 15 20 20 N 1.30826 * 108.21255 * 179.97438 * 19 18 17 21 21 N 1.40051 * 108.36318 * 359.97438 * 20 19 18 22 22 C 1.46501 * 125.99312 * 179.97438 * 21 20 19 23 23 C 1.50697 * 109.47436 * 305.03022 * 22 21 20 24 24 C 1.38678 * 120.42012 * 89.99876 * 23 22 21 25 25 C 1.38625 * 118.42261 * 180.02562 * 24 23 22 26 26 C 1.38222 * 119.16079 * 359.97438 * 25 24 23 27 27 N 1.31852 * 120.76489 * 0.02562 * 26 25 24 28 28 C 1.31887 * 121.72468 * 359.97438 * 27 26 25 29 29 C 1.35224 * 108.01094 * 0.26722 * 21 20 19 30 30 H 1.09004 * 109.47051 * 299.99570 * 1 2 3 31 31 H 1.08998 * 109.47270 * 59.99667 * 1 2 3 32 32 H 1.09000 * 109.47257 * 179.97438 * 1 2 3 33 33 H 0.96998 * 120.00099 * 179.97438 * 7 6 4 34 34 H 0.96998 * 119.99850 * 94.99627 * 12 2 1 35 35 H 0.97006 * 120.00081 * 359.97438 * 17 15 13 36 36 H 1.08009 * 125.89322 * 0.02562 * 19 18 17 37 37 H 1.09004 * 109.47172 * 185.02721 * 22 21 20 38 38 H 1.08999 * 109.46656 * 65.03012 * 22 21 20 39 39 H 1.08003 * 120.78653 * 0.29511 * 24 23 22 40 40 H 1.07998 * 120.41681 * 180.02562 * 25 24 23 41 41 H 1.07997 * 119.61999 * 179.97438 * 26 25 24 42 42 H 1.08002 * 119.61624 * 180.02562 * 28 27 26 43 43 H 1.08001 * 126.17510 * 179.73182 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6531 -1.5885 -1.1314 6 6 1.6991 -0.2394 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 1.8278 -2.5198 -4.0082 10 1 1.8276 -0.4192 -5.2205 11 1 3.8073 -1.1191 -4.0079 12 7 2.0183 -0.6906 1.1961 13 6 2.1470 -0.0183 2.3571 14 8 1.8588 1.1594 2.4115 15 6 2.6443 -0.7225 3.5765 16 8 2.9322 -1.9006 3.5221 17 7 2.7735 -0.0500 4.7373 18 6 3.2408 -0.7125 5.8846 19 6 3.6077 -2.0645 5.9673 20 7 3.9898 -2.3102 7.1941 21 7 3.8811 -1.1270 7.9354 22 6 4.2091 -0.9667 9.3542 23 6 3.4391 -1.9769 10.1651 24 6 3.9786 -3.2281 10.4235 25 6 3.2342 -4.1255 11.1733 26 6 1.9882 -3.7460 11.6357 27 7 1.5067 -2.5475 11.3707 28 6 2.1867 -1.6684 10.6606 29 6 3.4142 -0.1600 7.1135 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 0.7093 1.1618 -3.4844 34 1 2.2490 -1.6318 1.1526 35 1 2.5438 0.8915 4.7806 36 1 3.5802 -2.7788 5.1575 37 1 3.9411 0.0392 9.6777 38 1 5.2780 -1.1225 9.4998 39 1 4.9572 -3.4953 10.0530 40 1 3.6234 -5.1084 11.3941 41 1 1.4018 -4.4394 12.2202 42 1 1.7597 -0.6960 10.4642 43 1 3.2169 0.8667 7.3845 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320576570.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:00 Heat of formation + Delta-G solvation = 30.562091 kcal Electronic energy + Delta-G solvation = -27896.378830 eV Core-core repulsion = 23749.939935 eV Total energy + Delta-G solvation = -4146.438895 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.55289 -41.46126 -40.97599 -39.51913 -37.03989 -36.17698 -35.09606 -34.28726 -33.12627 -31.96314 -31.10081 -30.28936 -27.59286 -27.34541 -25.85405 -24.57639 -23.71919 -23.08518 -22.20633 -21.71698 -20.99668 -19.74289 -18.66746 -18.08361 -17.93956 -17.57539 -17.38823 -16.98505 -16.90934 -16.65848 -16.35474 -15.86149 -15.69191 -15.21532 -15.04680 -14.88251 -14.61875 -14.41389 -14.23748 -13.99645 -13.89889 -13.73282 -13.55698 -13.06252 -12.88797 -12.78236 -12.64724 -12.50677 -12.27463 -12.12785 -11.97208 -11.79419 -11.15286 -10.83961 -10.65403 -10.62388 -10.55091 -10.31661 -10.09845 -9.95284 -8.81589 -8.18690 -6.35701 -0.03204 0.23893 0.30835 0.89783 1.26624 1.47204 1.48329 1.56282 1.71921 1.72826 2.34569 2.41159 2.83905 2.86743 3.12025 3.39611 3.54872 3.58899 3.77327 3.88292 3.99306 3.99678 4.09463 4.29206 4.48282 4.52245 4.57473 4.66672 4.71956 4.81198 4.90477 4.95687 5.03705 5.14065 5.23878 5.33263 5.46324 5.61097 5.66252 5.71006 5.78938 5.98782 6.05305 6.09594 6.53498 6.66152 6.69048 6.88687 6.96514 7.11154 7.36466 8.87156 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.026730 B = 0.001768 C = 0.001748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.276579 B =15829.710792 C =16016.894132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.268 3.732 3 H 0.016 0.984 4 C -0.553 4.553 5 H 0.070 0.930 6 C 0.020 3.980 7 N -0.912 5.912 8 Si 0.971 3.029 9 H -0.267 1.267 10 H -0.283 1.283 11 H -0.272 1.272 12 N -0.672 5.672 13 C 0.499 3.501 14 O -0.559 6.559 15 C 0.514 3.486 16 O -0.529 6.529 17 N -0.599 5.599 18 C -0.035 4.035 19 C 0.034 3.966 20 N -0.303 5.303 21 N -0.359 5.359 22 C 0.180 3.820 23 C -0.167 4.167 24 C -0.051 4.051 25 C -0.178 4.178 26 C 0.092 3.908 27 N -0.521 5.521 28 C 0.106 3.894 29 C 0.057 3.943 30 H 0.021 0.979 31 H 0.073 0.927 32 H 0.038 0.962 33 H 0.268 0.732 34 H 0.410 0.590 35 H 0.431 0.569 36 H 0.187 0.813 37 H 0.150 0.850 38 H 0.113 0.887 39 H 0.147 0.853 40 H 0.159 0.841 41 H 0.174 0.826 42 H 0.171 0.829 43 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.111 -3.999 29.715 30.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.166 3.834 3 H 0.034 0.966 4 C -0.591 4.591 5 H 0.088 0.912 6 C -0.181 4.181 7 N -0.550 5.550 8 Si 0.796 3.204 9 H -0.192 1.192 10 H -0.208 1.208 11 H -0.197 1.197 12 N -0.321 5.321 13 C 0.279 3.721 14 O -0.439 6.439 15 C 0.295 3.705 16 O -0.406 6.406 17 N -0.246 5.246 18 C -0.139 4.139 19 C -0.152 4.152 20 N -0.126 5.126 21 N -0.142 5.142 22 C 0.060 3.940 23 C -0.170 4.170 24 C -0.077 4.077 25 C -0.197 4.197 26 C -0.065 4.065 27 N -0.229 5.229 28 C -0.051 4.051 29 C -0.092 4.092 30 H 0.040 0.960 31 H 0.092 0.908 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.246 0.754 35 H 0.270 0.730 36 H 0.203 0.797 37 H 0.168 0.832 38 H 0.131 0.869 39 H 0.164 0.836 40 H 0.177 0.823 41 H 0.191 0.809 42 H 0.188 0.812 43 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 6.657 -4.498 30.786 31.817 hybrid contribution 0.507 0.000 -2.056 2.117 sum 7.164 -4.497 28.730 29.949 Atomic orbital electron populations 1.21927 0.97490 0.99745 1.00336 1.18612 0.91674 0.92434 0.80723 0.96580 1.21461 1.33055 1.13776 0.90767 0.91212 1.25722 0.94778 0.95577 1.02043 1.70007 1.36553 1.23544 1.24859 0.85407 0.78640 0.78658 0.77702 1.19205 1.20848 1.19694 1.46247 1.61942 1.14823 1.09070 1.20103 0.80048 0.86943 0.85047 1.90704 1.51585 1.16291 1.85279 1.20033 0.79341 0.86643 0.84462 1.90622 1.49189 1.15972 1.84780 1.42229 1.61857 1.14548 1.05929 1.17954 1.14211 0.93527 0.88198 1.24381 0.99539 0.95957 0.95337 1.77331 1.24582 1.06738 1.03959 1.48598 1.49976 1.06077 1.09558 1.20895 1.00696 1.00457 0.71933 1.20974 0.97332 0.97271 1.01384 1.21818 1.00485 0.92185 0.93232 1.22464 0.96020 1.02025 0.99221 1.23252 0.94004 0.92891 0.96308 1.67731 1.36531 1.04079 1.14607 1.23028 0.90586 0.99317 0.92190 1.22515 1.00997 0.97521 0.88167 0.96011 0.90803 0.94269 0.92325 0.75446 0.72978 0.79684 0.83210 0.86930 0.83571 0.82348 0.80891 0.81235 0.75542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.73 9.26 71.98 0.67 -6.06 16 2 C 0.27 13.69 2.56 44.24 0.11 13.80 16 3 H 0.02 0.95 7.58 -2.39 -0.02 0.93 16 4 C -0.55 -29.26 8.73 25.60 0.22 -29.03 16 5 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 6 C 0.02 1.04 5.30 84.66 0.45 1.49 16 7 N -0.91 -50.94 11.32 21.45 0.24 -50.70 16 8 Si 0.97 41.91 29.54 68.60 2.03 43.93 16 9 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 10 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 11 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 12 N -0.67 -28.98 5.06 -447.55 -2.27 -31.24 16 13 C 0.50 19.87 7.85 87.23 0.68 20.56 16 14 O -0.56 -24.46 16.14 -3.31 -0.05 -24.51 16 15 C 0.51 17.14 7.86 87.23 0.69 17.82 16 16 O -0.53 -18.98 13.63 -3.41 -0.05 -19.02 16 17 N -0.60 -15.44 5.46 -305.43 -1.67 -17.10 16 18 C -0.03 -0.82 6.90 37.71 0.26 -0.56 16 19 C 0.03 0.94 10.84 85.35 0.93 1.86 16 20 N -0.30 -7.32 12.39 -56.72 -0.70 -8.03 16 21 N -0.36 -5.63 3.67 -351.12 -1.29 -6.92 16 22 C 0.18 1.34 6.66 85.63 0.57 1.91 16 23 C -0.17 -1.99 5.33 -19.78 -0.11 -2.09 16 24 C -0.05 -0.63 9.86 22.47 0.22 -0.41 16 25 C -0.18 -2.08 10.11 22.36 0.23 -1.86 16 26 C 0.09 1.30 11.18 84.69 0.95 2.25 16 27 N -0.52 -9.42 10.36 -195.85 -2.03 -11.45 16 28 C 0.11 1.50 10.86 84.67 0.92 2.42 16 29 C 0.06 0.83 11.49 83.62 0.96 1.79 16 30 H 0.02 1.00 8.14 -2.38 -0.02 0.98 16 31 H 0.07 3.96 6.07 -2.39 -0.01 3.95 16 32 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 34 H 0.41 16.42 8.01 -92.71 -0.74 15.68 16 35 H 0.43 9.28 8.29 -92.70 -0.77 8.52 16 36 H 0.19 5.77 5.92 -2.91 -0.02 5.75 16 37 H 0.15 -0.07 8.02 -2.38 -0.02 -0.09 16 38 H 0.11 0.55 8.10 -2.39 -0.02 0.53 16 39 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 40 H 0.16 1.04 8.06 -2.91 -0.02 1.01 16 41 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 42 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16 43 H 0.23 0.99 8.06 -2.91 -0.02 0.97 16 Total: -1.00 -73.71 378.29 1.53 -72.17 By element: Atomic # 1 Polarization: 29.41 SS G_CDS: -0.43 Total: 28.98 kcal Atomic # 6 Polarization: 16.15 SS G_CDS: 7.75 Total: 23.89 kcal Atomic # 7 Polarization: -117.73 SS G_CDS: -7.71 Total: -125.44 kcal Atomic # 8 Polarization: -43.44 SS G_CDS: -0.10 Total: -43.53 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.93 kcal Total: -73.71 1.53 -72.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320576570.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.736 kcal (2) G-P(sol) polarization free energy of solvation -73.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds