Wall clock time and date at job start Wed Apr 1 2020 02:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46503 * 109.46818 * 2 1 4 4 C 1.46507 * 119.99753 * 263.15008 * 3 2 1 5 5 C 1.50696 * 109.47023 * 270.00444 * 4 3 2 6 6 C 1.38651 * 120.79090 * 269.71723 * 5 4 3 7 7 C 1.38206 * 119.16398 * 179.79768 * 6 5 4 8 8 N 1.31869 * 120.76381 * 0.49099 * 7 6 5 9 9 C 1.31875 * 121.72394 * 359.73914 * 8 7 6 10 10 C 1.38204 * 120.76655 * 0.02562 * 9 8 7 11 11 C 1.34771 * 119.99969 * 83.15892 * 3 2 1 12 12 O 1.21363 * 119.99636 * 184.13730 * 11 3 2 13 13 C 1.49300 * 120.00304 * 4.13065 * 11 3 2 14 14 O 1.21406 * 120.00123 * 354.27449 * 13 11 3 15 15 N 1.34778 * 120.00268 * 174.54820 * 13 11 3 16 16 C 1.40291 * 120.00071 * 179.72485 * 15 13 11 17 17 C 1.40719 * 126.10333 * 359.69467 * 16 15 13 18 18 N 1.30880 * 108.38099 * 179.81448 * 17 16 15 19 19 N 1.40064 * 108.43026 * 0.43708 * 18 17 16 20 20 C 1.37291 * 126.05390 * 179.71648 * 19 18 17 21 21 H 1.07997 * 120.00389 * 180.02562 * 20 19 18 22 22 C 1.39006 * 119.99935 * 0.02562 * 20 19 18 23 23 N 1.31278 * 120.00077 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00123 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47172 * 0.02562 * 24 22 20 26 26 H 1.48508 * 109.47076 * 119.99904 * 24 22 20 27 27 H 1.48495 * 109.47220 * 240.00269 * 24 22 20 28 28 C 1.35793 * 126.09851 * 179.97438 * 16 15 13 29 29 H 1.08998 * 109.46727 * 299.99802 * 1 2 3 30 30 H 1.09002 * 109.46977 * 59.99779 * 1 2 3 31 31 H 1.08997 * 109.46822 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46727 * 240.00198 * 2 1 3 33 33 H 1.08998 * 109.47224 * 119.99769 * 2 1 3 34 34 H 1.09000 * 109.47020 * 30.00291 * 4 3 2 35 35 H 1.08996 * 109.46844 * 150.00500 * 4 3 2 36 36 H 1.08001 * 120.41824 * 0.02562 * 6 5 4 37 37 H 1.07998 * 119.61689 * 180.20588 * 7 6 5 38 38 H 1.07998 * 119.61453 * 179.97438 * 9 8 7 39 39 H 1.07993 * 120.41667 * 179.97438 * 10 9 8 40 40 H 0.97001 * 119.99927 * 359.72565 * 15 13 11 41 41 H 1.08005 * 125.81146 * 359.97438 * 17 16 15 42 42 H 0.97006 * 119.99966 * 179.97438 * 23 22 20 43 43 H 1.07991 * 126.24993 * 359.97438 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.4052 2.0214 -1.2598 5 6 3.8677 1.7707 -1.5223 6 6 4.8331 2.6518 -1.0597 7 6 6.1651 2.3868 -1.3160 8 7 6.5205 1.3166 -1.9996 9 6 5.6296 0.4596 -2.4588 10 6 4.2797 0.6564 -2.2372 11 6 2.1119 2.0629 1.1588 12 8 2.4444 3.2301 1.1511 13 6 1.8062 1.3824 2.4521 14 8 1.3739 0.2479 2.4537 15 7 2.0050 2.0293 3.6176 16 6 1.7123 1.3919 4.8325 17 6 1.2031 0.0888 4.9836 18 7 1.0646 -0.1546 6.2621 19 7 1.4682 0.9813 6.9753 20 6 1.4655 1.1210 8.3411 21 1 1.7987 2.0450 8.7901 22 6 1.0338 0.0732 9.1461 23 7 0.6283 -1.0498 8.6004 24 14 1.0308 0.2630 11.0045 25 1 1.5301 1.6143 11.3649 26 1 -0.3528 0.0942 11.5171 27 1 1.9119 -0.7682 11.6088 28 6 1.8648 1.9242 6.0724 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.8132 1.6059 -2.0752 35 1 2.2270 3.0946 -1.1916 36 1 4.5481 3.5322 -0.5028 37 1 6.9234 3.0665 -0.9562 38 1 5.9586 -0.4056 -3.0151 39 1 3.5549 -0.0488 -2.6162 40 1 2.3504 2.9358 3.6164 41 1 0.9691 -0.5953 4.1812 42 1 0.3274 -1.7811 9.1622 43 1 2.2331 2.9131 6.3019 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320677925.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:12:50 Heat of formation + Delta-G solvation = 70.542877 kcal Electronic energy + Delta-G solvation = -29098.284199 eV Core-core repulsion = 24953.579001 eV Total energy + Delta-G solvation = -4144.705198 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.97701 -40.23627 -39.53232 -38.00968 -36.59431 -34.38367 -33.43665 -33.14296 -31.44309 -30.47845 -30.35874 -28.27767 -27.46496 -25.29558 -24.16469 -23.71304 -23.05058 -22.05239 -21.04081 -19.68864 -19.45354 -17.78171 -17.39663 -17.08697 -16.73134 -16.39296 -15.93862 -15.79057 -15.54457 -15.19091 -15.06988 -14.50170 -14.04045 -14.00210 -13.93387 -13.86258 -13.44733 -13.31391 -12.99341 -12.88391 -12.76398 -12.45938 -12.08764 -11.76085 -11.64652 -11.54700 -11.34915 -11.21495 -10.95837 -10.85550 -10.54902 -10.27545 -10.05304 -9.80018 -9.38196 -9.26868 -9.07978 -8.92812 -8.76941 -8.16381 -6.81413 -6.63599 -4.30831 0.87945 0.91684 1.58298 2.49878 2.89846 3.02026 3.07844 3.25332 3.53687 3.66123 3.69666 3.82860 4.22999 4.31736 4.35642 4.37773 4.53426 4.81466 4.87654 4.89923 4.95269 4.96761 5.03643 5.22586 5.35393 5.41495 5.48572 5.55929 5.68652 5.71205 5.99570 6.04721 6.15456 6.22276 6.32038 6.34299 6.45731 6.71548 6.85608 6.91172 7.03294 7.13355 7.63666 7.73155 7.78962 8.04695 8.14810 8.44669 8.65876 9.27826 9.56457 10.32181 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.019400 B = 0.002303 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.946384 B =12155.185488 C =12655.359398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.091 3.909 3 N -0.583 5.583 4 C 0.151 3.849 5 C -0.063 4.063 6 C -0.150 4.150 7 C 0.096 3.904 8 N -0.485 5.485 9 C 0.094 3.906 10 C -0.159 4.159 11 C 0.516 3.484 12 O -0.528 6.528 13 C 0.483 3.517 14 O -0.513 6.513 15 N -0.582 5.582 16 C -0.069 4.069 17 C -0.026 4.026 18 N -0.261 5.261 19 N -0.138 5.138 20 C -0.321 4.321 21 H 0.119 0.881 22 C 0.046 3.954 23 N -0.767 5.767 24 Si 0.936 3.064 25 H -0.262 1.262 26 H -0.273 1.273 27 H -0.273 1.273 28 C -0.078 4.078 29 H 0.064 0.936 30 H 0.046 0.954 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.121 0.879 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.141 0.859 37 H 0.156 0.844 38 H 0.155 0.845 39 H 0.134 0.866 40 H 0.408 0.592 41 H 0.178 0.822 42 H 0.275 0.725 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.860 4.468 -19.055 19.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.031 4.031 3 N -0.316 5.316 4 C 0.028 3.972 5 C -0.073 4.073 6 C -0.170 4.170 7 C -0.061 4.061 8 N -0.194 5.194 9 C -0.063 4.063 10 C -0.179 4.179 11 C 0.300 3.700 12 O -0.404 6.404 13 C 0.264 3.736 14 O -0.391 6.391 15 N -0.224 5.224 16 C -0.175 4.175 17 C -0.201 4.201 18 N -0.091 5.091 19 N 0.095 4.905 20 C -0.454 4.454 21 H 0.136 0.864 22 C -0.171 4.171 23 N -0.393 5.393 24 Si 0.760 3.240 25 H -0.186 1.186 26 H -0.198 1.198 27 H -0.198 1.198 28 C -0.229 4.229 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.138 0.862 34 H 0.112 0.888 35 H 0.118 0.882 36 H 0.159 0.841 37 H 0.173 0.827 38 H 0.172 0.828 39 H 0.152 0.848 40 H 0.243 0.757 41 H 0.195 0.805 42 H 0.086 0.914 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 4.144 3.048 -18.264 18.975 hybrid contribution -0.457 1.322 0.267 1.424 sum 3.688 4.370 -17.998 18.884 Atomic orbital electron populations 1.22067 0.95215 1.02549 1.01843 1.22234 0.95275 0.80676 1.04888 1.47832 1.63144 1.15333 1.05275 1.20439 0.90065 1.00565 0.86108 1.20667 0.96639 0.94400 0.95565 1.22239 0.93873 1.00924 0.99952 1.22805 0.94860 0.94154 0.94232 1.67674 1.39039 1.03324 1.09364 1.22755 0.89240 0.97588 0.96682 1.22067 0.97749 0.97917 1.00185 1.20366 0.77893 0.86377 0.85395 1.90702 1.46584 1.15913 1.87172 1.19568 0.82648 0.86889 0.84453 1.90555 1.45100 1.17573 1.85895 1.42162 1.59802 1.17051 1.03388 1.17238 1.20600 0.96424 0.83252 1.24141 1.05340 0.95151 0.95517 1.78268 1.23400 1.05773 1.01696 1.44570 1.33827 1.07081 1.04980 1.19973 1.45766 1.02811 0.76801 0.86392 1.25668 0.95263 0.94652 1.01557 1.70213 1.30141 1.02583 1.36389 0.85742 0.78642 0.79286 0.80374 1.18611 1.19848 1.19841 1.21308 1.15994 0.97419 0.88209 0.91650 0.93529 0.91344 0.91314 0.86163 0.88772 0.88219 0.84140 0.82670 0.82760 0.84800 0.75689 0.80531 0.91391 0.83399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 9.74 37.16 0.36 -1.33 16 2 C 0.09 0.98 5.71 -4.04 -0.02 0.96 16 3 N -0.58 -6.75 2.47 -175.62 -0.43 -7.19 16 4 C 0.15 1.36 5.58 -5.19 -0.03 1.33 16 5 C -0.06 -0.61 5.50 -104.32 -0.57 -1.18 16 6 C -0.15 -1.54 9.82 -39.44 -0.39 -1.93 16 7 C 0.10 1.00 11.18 -17.55 -0.20 0.80 16 8 N -0.48 -5.50 10.36 -13.25 -0.14 -5.64 16 9 C 0.09 0.88 11.18 -17.55 -0.20 0.68 16 10 C -0.16 -1.34 9.82 -39.44 -0.39 -1.73 16 11 C 0.52 7.54 7.67 -11.66 -0.09 7.45 16 12 O -0.53 -8.13 15.93 5.49 0.09 -8.04 16 13 C 0.48 8.33 7.63 -11.65 -0.09 8.24 16 14 O -0.51 -9.47 8.99 5.45 0.05 -9.42 16 15 N -0.58 -10.63 5.45 -10.46 -0.06 -10.69 16 16 C -0.07 -1.55 6.90 -83.92 -0.58 -2.13 16 17 C -0.03 -0.65 10.84 -17.02 -0.18 -0.83 16 18 N -0.26 -7.33 10.39 30.81 0.32 -7.01 16 19 N -0.14 -3.69 3.73 -11.40 -0.04 -3.73 16 20 C -0.32 -8.30 10.25 -14.82 -0.15 -8.45 16 21 H 0.12 2.73 7.83 -52.49 -0.41 2.32 16 22 C 0.05 1.16 5.50 -17.50 -0.10 1.07 16 23 N -0.77 -20.89 11.81 55.50 0.66 -20.24 16 24 Si 0.94 18.51 29.55 -169.99 -5.02 13.49 16 25 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 26 H -0.27 -5.37 7.11 56.52 0.40 -4.96 16 27 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 28 C -0.08 -1.80 11.50 -16.38 -0.19 -1.99 16 29 H 0.06 0.88 7.05 -51.93 -0.37 0.51 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.56 8.02 -51.93 -0.42 0.14 16 33 H 0.12 1.62 5.38 -51.93 -0.28 1.34 16 34 H 0.09 0.61 8.03 -51.93 -0.42 0.19 16 35 H 0.10 0.94 7.33 -51.93 -0.38 0.56 16 36 H 0.14 1.44 7.94 -52.49 -0.42 1.02 16 37 H 0.16 1.26 8.06 -52.49 -0.42 0.84 16 38 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16 39 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 40 H 0.41 6.48 8.31 -40.82 -0.34 6.14 16 41 H 0.18 4.25 5.92 -52.48 -0.31 3.94 16 42 H 0.28 6.83 8.31 -40.82 -0.34 6.49 16 43 H 0.15 2.87 8.06 -52.49 -0.42 2.45 16 LS Contribution 371.45 15.07 5.60 5.60 Total: -1.00 -32.43 371.45 -6.80 -39.23 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -5.01 Total: 12.69 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -2.81 Total: 0.95 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: 0.30 Total: -54.50 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: 0.14 Total: -17.46 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.02 Total: 13.49 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.43 -6.80 -39.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320677925.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.775 kcal (2) G-P(sol) polarization free energy of solvation -32.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds