Wall clock time and date at job start Wed Apr 1 2020 01:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47519 * 2 1 4 4 C 1.50700 * 109.47411 * 119.99821 * 2 1 3 5 5 H 1.08000 * 119.99995 * 119.99575 * 4 2 1 6 6 C 1.37878 * 120.00036 * 300.00317 * 4 2 1 7 7 N 1.31510 * 119.99772 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99882 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47198 * 89.99948 * 8 6 4 10 10 H 1.48506 * 109.47350 * 210.00097 * 8 6 4 11 11 H 1.48502 * 109.47345 * 329.99812 * 8 6 4 12 12 N 1.46498 * 109.47257 * 239.99927 * 2 1 3 13 13 C 1.34783 * 119.99907 * 84.99606 * 12 2 1 14 14 O 1.21363 * 119.99783 * 0.02562 * 13 12 2 15 15 C 1.49341 * 119.99817 * 180.02562 * 13 12 2 16 16 O 1.21383 * 120.00387 * 0.02562 * 15 13 12 17 17 N 1.34777 * 119.99739 * 179.72510 * 15 13 12 18 18 C 1.39930 * 120.00380 * 180.27595 * 17 15 13 19 19 C 1.40457 * 125.97563 * 359.71813 * 18 17 15 20 20 C 1.35218 * 107.86757 * 179.82329 * 19 18 17 21 21 N 1.34987 * 107.87279 * 0.43474 * 20 19 18 22 22 C 1.46503 * 125.96903 * 179.72110 * 21 20 19 23 23 C 1.50702 * 109.46617 * 125.02532 * 22 21 20 24 24 C 1.38233 * 119.61543 * 125.00197 * 23 22 21 25 25 C 1.38626 * 119.15883 * 179.97438 * 24 23 22 26 26 C 1.38674 * 118.42165 * 359.97438 * 25 24 23 27 27 C 1.38186 * 119.16470 * 359.97438 * 26 25 24 28 28 N 1.31856 * 119.62033 * 304.72498 * 23 22 21 29 29 N 1.31268 * 125.98365 * 180.02562 * 18 17 15 30 30 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47054 * 299.99787 * 1 2 3 32 32 H 1.08996 * 109.47245 * 59.99999 * 1 2 3 33 33 H 0.97006 * 119.99865 * 180.02562 * 7 6 4 34 34 H 0.97001 * 120.00384 * 265.00562 * 12 2 1 35 35 H 0.97000 * 120.00317 * 0.28416 * 17 15 13 36 36 H 1.08007 * 126.06574 * 359.96867 * 19 18 17 37 37 H 1.08000 * 126.05874 * 180.15184 * 20 19 18 38 38 H 1.08992 * 109.47089 * 245.02384 * 22 21 20 39 39 H 1.09000 * 109.46847 * 5.03036 * 22 21 20 40 40 H 1.07992 * 120.41702 * 359.95219 * 24 23 22 41 41 H 1.08001 * 120.78933 * 180.02562 * 25 24 23 42 42 H 1.08003 * 120.42090 * 180.02562 * 26 25 24 43 43 H 1.07992 * 119.61686 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3215 -1.1203 4.0079 9 1 3.6298 -0.5458 4.4123 10 1 1.3432 -0.9493 5.1121 11 1 2.4860 -2.5662 3.7119 12 7 2.0184 -0.6906 -1.1961 13 6 2.1470 -0.0182 -2.3572 14 8 1.8587 1.1594 -2.4115 15 6 2.6443 -0.7224 -3.5767 16 8 2.9322 -1.9004 -3.5224 17 7 2.7677 -0.0514 -4.7390 18 6 3.2281 -0.7125 -5.8831 19 6 3.6007 -2.0645 -5.9611 20 6 3.9825 -2.3169 -7.2334 21 7 3.8676 -1.1699 -7.9357 22 6 4.1841 -0.9947 -9.3554 23 6 2.9845 -0.4295 -10.0714 24 6 3.1128 0.7353 -10.8047 25 6 2.0033 1.2466 -11.4599 26 6 0.8010 0.5639 -11.3531 27 6 0.7491 -0.5954 -10.6028 28 7 1.8260 -1.0546 -9.9956 29 7 3.3929 -0.1763 -7.0699 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 0.7095 1.1618 3.4844 34 1 2.2490 -1.6318 -1.1526 35 1 2.5374 0.8899 -4.7825 36 1 3.5830 -2.7768 -5.1494 37 1 4.3237 -3.2666 -7.6183 38 1 5.0250 -0.3090 -9.4583 39 1 4.4460 -1.9590 -9.7909 40 1 4.0652 1.2406 -10.8660 41 1 2.0739 2.1545 -12.0405 42 1 -0.0836 0.9332 -11.8507 43 1 -0.1833 -1.1330 -10.5151 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320711696.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:42 Heat of formation + Delta-G solvation = 60.858849 kcal Electronic energy + Delta-G solvation = -28046.463340 eV Core-core repulsion = 23901.338211 eV Total energy + Delta-G solvation = -4145.125129 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.49912 -40.53606 -39.96424 -38.06486 -35.54178 -34.86113 -33.73433 -32.77723 -32.39871 -30.80226 -30.01569 -29.16720 -26.93359 -25.33475 -24.78025 -23.93069 -22.64956 -21.89871 -21.06549 -20.17563 -19.51148 -18.32390 -17.60270 -17.30732 -16.81630 -16.32892 -16.19055 -15.94527 -15.60317 -15.32263 -15.09903 -14.86815 -14.53803 -14.23574 -13.78248 -13.63076 -13.54827 -13.31948 -13.10013 -13.01778 -12.71681 -12.47019 -12.17394 -11.79425 -11.21443 -11.08225 -11.01195 -10.93865 -10.81238 -10.67292 -10.32955 -10.29537 -10.26156 -9.85977 -9.49519 -9.14619 -9.06453 -8.86665 -8.61070 -8.28280 -8.11882 -6.16131 -4.25602 0.59237 0.86636 1.47704 1.99504 2.04505 2.87580 2.95876 3.25386 3.31956 3.34866 3.39704 3.72352 3.76517 4.08305 4.20675 4.34573 4.39537 4.49537 4.63568 4.67890 4.76087 4.87666 5.08827 5.10416 5.17098 5.26727 5.31368 5.59099 5.67434 5.73577 5.76810 6.12523 6.22987 6.73627 6.74603 6.86251 6.94693 6.96998 7.03911 7.21768 7.37938 7.56586 7.62429 7.75126 7.83052 7.94844 8.06320 8.44368 8.61948 8.86078 9.41281 10.89923 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.024407 B = 0.001892 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.949752 B =14791.982805 C =15412.243916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.262 3.738 3 H 0.055 0.945 4 C -0.536 4.536 5 H 0.065 0.935 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.905 3.095 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.272 1.272 12 N -0.666 5.666 13 C 0.499 3.501 14 O -0.533 6.533 15 C 0.518 3.482 16 O -0.498 6.498 17 N -0.615 5.615 18 C 0.302 3.698 19 C -0.265 4.265 20 C 0.070 3.930 21 N -0.361 5.361 22 C 0.195 3.805 23 C 0.111 3.889 24 C -0.153 4.153 25 C -0.075 4.075 26 C -0.169 4.169 27 C 0.103 3.897 28 N -0.466 5.466 29 N -0.315 5.315 30 H 0.030 0.970 31 H 0.094 0.906 32 H 0.017 0.983 33 H 0.265 0.735 34 H 0.403 0.597 35 H 0.426 0.574 36 H 0.174 0.826 37 H 0.177 0.823 38 H 0.101 0.899 39 H 0.114 0.886 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.613 -3.106 -29.366 29.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.161 3.839 3 H 0.073 0.927 4 C -0.574 4.574 5 H 0.083 0.917 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.732 3.268 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.197 1.197 12 N -0.315 5.315 13 C 0.277 3.723 14 O -0.411 6.411 15 C 0.299 3.701 16 O -0.370 6.370 17 N -0.265 5.265 18 C 0.046 3.954 19 C -0.295 4.295 20 C -0.075 4.075 21 N -0.145 5.145 22 C 0.072 3.928 23 C -0.028 4.028 24 C -0.173 4.173 25 C -0.101 4.101 26 C -0.189 4.189 27 C -0.055 4.055 28 N -0.175 5.175 29 N -0.145 5.145 30 H 0.050 0.950 31 H 0.113 0.887 32 H 0.036 0.964 33 H 0.075 0.925 34 H 0.238 0.762 35 H 0.264 0.736 36 H 0.191 0.809 37 H 0.194 0.806 38 H 0.119 0.881 39 H 0.132 0.868 40 H 0.155 0.845 41 H 0.154 0.846 42 H 0.154 0.846 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 4.389 -2.722 -29.415 29.865 hybrid contribution 0.266 -0.248 0.654 0.748 sum 4.655 -2.970 -28.761 29.286 Atomic orbital electron populations 1.22101 0.97789 0.99617 1.01247 1.18996 0.91483 0.94171 0.79272 0.92735 1.21189 1.32754 1.13491 0.89976 0.91684 1.24882 0.94696 0.94967 0.99110 1.69894 1.35685 1.22390 1.24063 0.86384 0.78568 0.79924 0.81878 1.20505 1.21050 1.19712 1.46487 1.61311 1.14565 1.09160 1.19511 0.81226 0.87223 0.84312 1.90744 1.50658 1.15166 1.84560 1.20905 0.78024 0.86980 0.84156 1.90652 1.46517 1.15347 1.84479 1.42347 1.63299 1.15041 1.05793 1.19135 0.97506 0.91957 0.86805 1.21877 1.13311 0.95986 0.98315 1.22554 1.01217 0.91743 0.92017 1.47846 1.52410 1.06625 1.07571 1.20455 0.93627 1.03413 0.75288 1.21152 0.93609 0.92727 0.95299 1.21919 1.00331 0.96439 0.98643 1.21590 0.92439 0.99091 0.96960 1.22217 0.99010 0.96966 1.00670 1.22769 0.96660 0.93734 0.92292 1.67412 0.98856 1.33032 1.18186 1.77365 1.25687 1.12422 0.99035 0.95043 0.88711 0.96418 0.92459 0.76238 0.73606 0.80926 0.80613 0.88110 0.86757 0.84512 0.84555 0.84599 0.82610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 9.26 37.16 0.34 -3.30 16 2 C 0.26 6.59 2.56 -69.08 -0.18 6.41 16 3 H 0.05 1.54 7.58 -51.93 -0.39 1.15 16 4 C -0.54 -14.12 8.73 -34.44 -0.30 -14.42 16 5 H 0.07 1.65 7.74 -52.49 -0.41 1.25 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.46 11.32 55.43 0.63 -23.84 16 8 Si 0.91 20.58 29.54 -169.99 -5.02 15.56 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 11 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 12 N -0.67 -14.33 5.06 -55.40 -0.28 -14.61 16 13 C 0.50 10.20 7.85 -11.63 -0.09 10.11 16 14 O -0.53 -12.02 16.14 5.49 0.09 -11.93 16 15 C 0.52 9.24 7.85 -11.64 -0.09 9.15 16 16 O -0.50 -9.14 13.60 5.47 0.07 -9.07 16 17 N -0.61 -9.91 5.43 -11.58 -0.06 -9.97 16 18 C 0.30 4.75 8.10 -154.56 -1.25 3.49 16 19 C -0.26 -3.79 9.60 -39.82 -0.38 -4.17 16 20 C 0.07 0.77 11.43 -17.24 -0.20 0.57 16 21 N -0.36 -4.12 3.63 -62.56 -0.23 -4.34 16 22 C 0.19 1.44 6.89 -5.19 -0.04 1.40 16 23 C 0.11 1.00 6.24 -82.58 -0.52 0.48 16 24 C -0.15 -1.08 9.71 -39.44 -0.38 -1.47 16 25 C -0.07 -0.48 10.18 -39.28 -0.40 -0.88 16 26 C -0.17 -1.14 10.11 -39.44 -0.40 -1.54 16 27 C 0.10 0.89 11.18 -17.55 -0.20 0.69 16 28 N -0.47 -5.01 10.22 -9.47 -0.10 -5.11 16 29 N -0.32 -4.65 12.42 31.41 0.39 -4.26 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 2.50 6.07 -51.93 -0.32 2.19 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.27 6.97 8.31 -40.82 -0.34 6.64 16 34 H 0.40 8.01 8.01 -40.82 -0.33 7.69 16 35 H 0.43 6.46 8.29 -40.82 -0.34 6.12 16 36 H 0.17 2.62 5.91 -52.48 -0.31 2.31 16 37 H 0.18 1.18 8.06 -52.49 -0.42 0.76 16 38 H 0.10 0.53 7.87 -51.93 -0.41 0.12 16 39 H 0.11 0.52 8.07 -51.93 -0.42 0.10 16 40 H 0.14 0.63 7.95 -52.49 -0.42 0.21 16 41 H 0.14 0.52 8.06 -52.49 -0.42 0.09 16 42 H 0.14 0.57 8.06 -52.48 -0.42 0.15 16 43 H 0.16 1.04 8.06 -52.49 -0.42 0.61 16 LS Contribution 378.00 15.07 5.70 5.70 Total: -1.00 -33.67 378.00 -7.99 -41.66 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -5.01 Total: 11.99 kcal Atomic # 6 Polarization: 12.40 SS G_CDS: -4.17 Total: 8.23 kcal Atomic # 7 Polarization: -62.48 SS G_CDS: 0.35 Total: -62.13 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: 0.16 Total: -21.00 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.67 -7.99 -41.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320711696.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.519 kcal (2) G-P(sol) polarization free energy of solvation -33.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds