Wall clock time and date at job start Wed Apr 1 2020 01:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47519 * 2 1 4 4 C 1.50700 * 109.47411 * 119.99821 * 2 1 3 5 5 H 1.08000 * 119.99995 * 119.99575 * 4 2 1 6 6 C 1.37878 * 120.00036 * 300.00317 * 4 2 1 7 7 N 1.31510 * 119.99772 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99882 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47198 * 89.99948 * 8 6 4 10 10 H 1.48506 * 109.47350 * 210.00097 * 8 6 4 11 11 H 1.48502 * 109.47345 * 329.99812 * 8 6 4 12 12 N 1.46498 * 109.47257 * 239.99927 * 2 1 3 13 13 C 1.34783 * 119.99907 * 84.99606 * 12 2 1 14 14 O 1.21363 * 119.99783 * 0.02562 * 13 12 2 15 15 C 1.49341 * 119.99817 * 180.02562 * 13 12 2 16 16 O 1.21383 * 120.00387 * 0.02562 * 15 13 12 17 17 N 1.34777 * 119.99739 * 179.72510 * 15 13 12 18 18 C 1.39930 * 120.00380 * 180.27595 * 17 15 13 19 19 C 1.40457 * 125.97563 * 359.71813 * 18 17 15 20 20 C 1.35218 * 107.86757 * 179.82329 * 19 18 17 21 21 N 1.34987 * 107.87279 * 0.43474 * 20 19 18 22 22 C 1.46503 * 125.96903 * 179.72110 * 21 20 19 23 23 C 1.50702 * 109.46617 * 125.02532 * 22 21 20 24 24 C 1.38233 * 119.61543 * 125.00197 * 23 22 21 25 25 C 1.38626 * 119.15883 * 179.97438 * 24 23 22 26 26 C 1.38674 * 118.42165 * 359.97438 * 25 24 23 27 27 C 1.38186 * 119.16470 * 359.97438 * 26 25 24 28 28 N 1.31856 * 119.62033 * 304.72498 * 23 22 21 29 29 N 1.31268 * 125.98365 * 180.02562 * 18 17 15 30 30 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47054 * 299.99787 * 1 2 3 32 32 H 1.08996 * 109.47245 * 59.99999 * 1 2 3 33 33 H 0.97006 * 119.99865 * 180.02562 * 7 6 4 34 34 H 0.97001 * 120.00384 * 265.00562 * 12 2 1 35 35 H 0.97000 * 120.00317 * 0.28416 * 17 15 13 36 36 H 1.08007 * 126.06574 * 359.96867 * 19 18 17 37 37 H 1.08000 * 126.05874 * 180.15184 * 20 19 18 38 38 H 1.08992 * 109.47089 * 245.02384 * 22 21 20 39 39 H 1.09000 * 109.46847 * 5.03036 * 22 21 20 40 40 H 1.07992 * 120.41702 * 359.95219 * 24 23 22 41 41 H 1.08001 * 120.78933 * 180.02562 * 25 24 23 42 42 H 1.08003 * 120.42090 * 180.02562 * 26 25 24 43 43 H 1.07992 * 119.61686 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3215 -1.1203 4.0079 9 1 3.6298 -0.5458 4.4123 10 1 1.3432 -0.9493 5.1121 11 1 2.4860 -2.5662 3.7119 12 7 2.0184 -0.6906 -1.1961 13 6 2.1470 -0.0182 -2.3572 14 8 1.8587 1.1594 -2.4115 15 6 2.6443 -0.7224 -3.5767 16 8 2.9322 -1.9004 -3.5224 17 7 2.7677 -0.0514 -4.7390 18 6 3.2281 -0.7125 -5.8831 19 6 3.6007 -2.0645 -5.9611 20 6 3.9825 -2.3169 -7.2334 21 7 3.8676 -1.1699 -7.9357 22 6 4.1841 -0.9947 -9.3554 23 6 2.9845 -0.4295 -10.0714 24 6 3.1128 0.7353 -10.8047 25 6 2.0033 1.2466 -11.4599 26 6 0.8010 0.5639 -11.3531 27 6 0.7491 -0.5954 -10.6028 28 7 1.8260 -1.0546 -9.9956 29 7 3.3929 -0.1763 -7.0699 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 0.7095 1.1618 3.4844 34 1 2.2490 -1.6318 -1.1526 35 1 2.5374 0.8899 -4.7825 36 1 3.5830 -2.7768 -5.1494 37 1 4.3237 -3.2666 -7.6183 38 1 5.0250 -0.3090 -9.4583 39 1 4.4460 -1.9590 -9.7909 40 1 4.0652 1.2406 -10.8660 41 1 2.0739 2.1545 -12.0405 42 1 -0.0836 0.9332 -11.8507 43 1 -0.1833 -1.1330 -10.5151 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320711696.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:41 Heat of formation + Delta-G solvation = 37.304253 kcal Electronic energy + Delta-G solvation = -28047.484744 eV Core-core repulsion = 23901.338211 eV Total energy + Delta-G solvation = -4146.146533 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.55557 -41.56500 -40.96552 -39.65241 -37.12413 -36.30435 -34.62563 -34.28675 -33.32341 -31.65283 -31.11811 -30.92729 -27.82807 -27.36118 -26.15243 -24.48223 -23.51163 -23.16504 -22.27125 -21.55834 -21.07892 -19.85165 -18.51933 -18.09080 -18.00731 -17.75432 -17.24570 -17.12495 -16.93129 -16.67157 -16.35659 -15.93716 -15.79998 -15.25499 -15.15401 -14.96138 -14.44686 -14.35474 -14.21611 -13.98350 -13.95201 -13.75651 -13.40830 -13.06096 -12.91855 -12.82582 -12.71884 -12.52686 -12.28097 -12.11437 -12.03597 -11.76059 -11.16062 -10.83995 -10.71310 -10.60477 -10.44714 -10.04549 -10.00970 -9.90332 -9.31195 -8.19242 -6.36425 0.03265 0.08605 0.33819 0.88175 0.97724 1.47151 1.47399 1.58386 1.74236 1.77587 2.26167 2.40320 2.67266 2.85714 3.11686 3.19520 3.42299 3.69312 3.79464 3.96228 4.04817 4.19459 4.21435 4.38975 4.48741 4.53817 4.63357 4.70143 4.78536 4.80872 4.88813 4.94633 5.01858 5.16010 5.24453 5.29316 5.43600 5.58913 5.61239 5.73264 5.74630 5.86586 6.03526 6.10657 6.41320 6.64673 6.72859 6.73682 6.99577 7.04740 7.35446 8.87015 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.024407 B = 0.001892 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.949752 B =14791.982805 C =15412.243916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.268 3.732 3 H 0.016 0.984 4 C -0.551 4.551 5 H 0.072 0.928 6 C 0.018 3.982 7 N -0.913 5.913 8 Si 0.973 3.027 9 H -0.277 1.277 10 H -0.282 1.282 11 H -0.263 1.263 12 N -0.666 5.666 13 C 0.502 3.498 14 O -0.556 6.556 15 C 0.529 3.471 16 O -0.503 6.503 17 N -0.606 5.606 18 C 0.274 3.726 19 C -0.297 4.297 20 C 0.094 3.906 21 N -0.350 5.350 22 C 0.184 3.816 23 C 0.089 3.911 24 C -0.156 4.156 25 C -0.080 4.080 26 C -0.169 4.169 27 C 0.078 3.922 28 N -0.502 5.502 29 N -0.335 5.335 30 H 0.041 0.959 31 H 0.074 0.926 32 H 0.019 0.981 33 H 0.267 0.733 34 H 0.412 0.588 35 H 0.428 0.572 36 H 0.160 0.840 37 H 0.223 0.777 38 H 0.126 0.874 39 H 0.147 0.853 40 H 0.161 0.839 41 H 0.164 0.836 42 H 0.159 0.841 43 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.861 -4.142 -31.383 32.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.165 3.835 3 H 0.034 0.966 4 C -0.589 4.589 5 H 0.090 0.910 6 C -0.182 4.182 7 N -0.551 5.551 8 Si 0.798 3.202 9 H -0.203 1.203 10 H -0.207 1.207 11 H -0.187 1.187 12 N -0.315 5.315 13 C 0.281 3.719 14 O -0.436 6.436 15 C 0.309 3.691 16 O -0.376 6.376 17 N -0.255 5.255 18 C 0.020 3.980 19 C -0.327 4.327 20 C -0.053 4.053 21 N -0.133 5.133 22 C 0.063 3.937 23 C -0.050 4.050 24 C -0.177 4.177 25 C -0.106 4.106 26 C -0.188 4.188 27 C -0.079 4.079 28 N -0.212 5.212 29 N -0.166 5.166 30 H 0.060 0.940 31 H 0.093 0.907 32 H 0.038 0.962 33 H 0.077 0.923 34 H 0.248 0.752 35 H 0.266 0.734 36 H 0.178 0.822 37 H 0.240 0.760 38 H 0.144 0.856 39 H 0.165 0.835 40 H 0.179 0.821 41 H 0.182 0.818 42 H 0.177 0.823 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 5.645 -3.755 -31.490 32.212 hybrid contribution -0.109 0.129 1.051 1.064 sum 5.537 -3.626 -30.439 31.150 Atomic orbital electron populations 1.21935 0.97413 0.99913 1.00321 1.18655 0.91742 0.92455 0.80606 0.96643 1.21483 1.33015 1.13808 0.90587 0.90953 1.25748 0.94757 0.95602 1.02136 1.70023 1.36582 1.23645 1.24826 0.85321 0.77843 0.79091 0.77954 1.20267 1.20738 1.18688 1.46232 1.61690 1.14885 1.08741 1.19885 0.80287 0.86889 0.84822 1.90725 1.51444 1.16338 1.85108 1.20120 0.78492 0.86641 0.83809 1.90661 1.47107 1.15281 1.84507 1.42135 1.62668 1.15018 1.05719 1.19296 0.99163 0.92741 0.86800 1.21891 1.15719 0.95357 0.99770 1.23148 0.98526 0.92932 0.90707 1.48230 1.50443 1.06007 1.08631 1.20998 0.93831 1.06037 0.72807 1.21441 0.93597 0.93638 0.96283 1.22263 1.01688 0.95792 0.97910 1.22016 0.92037 0.99824 0.96715 1.22511 1.00236 0.96183 0.99918 1.23060 0.96781 0.94935 0.93106 1.67360 0.99921 1.34406 1.19487 1.77277 1.26161 1.14097 0.99040 0.93993 0.90722 0.96170 0.92329 0.75173 0.73399 0.82210 0.76034 0.85617 0.83520 0.82117 0.81850 0.82291 0.81906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.86 9.26 71.98 0.67 -6.19 16 2 C 0.27 13.82 2.56 44.25 0.11 13.94 16 3 H 0.02 0.93 7.58 -2.39 -0.02 0.91 16 4 C -0.55 -29.23 8.73 25.60 0.22 -29.01 16 5 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 6 C 0.02 0.97 5.30 84.66 0.45 1.42 16 7 N -0.91 -51.38 11.32 21.45 0.24 -51.13 16 8 Si 0.97 42.01 29.54 68.60 2.03 44.03 16 9 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 10 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 11 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 12 N -0.67 -29.17 5.06 -447.53 -2.27 -31.43 16 13 C 0.50 21.00 7.85 87.23 0.68 21.68 16 14 O -0.56 -25.91 16.14 -3.29 -0.05 -25.97 16 15 C 0.53 19.18 7.85 87.24 0.69 19.86 16 16 O -0.50 -18.58 13.60 -3.35 -0.05 -18.63 16 17 N -0.61 -19.89 5.43 -308.90 -1.68 -21.57 16 18 C 0.27 8.59 8.10 133.40 1.08 9.67 16 19 C -0.30 -8.30 9.60 22.11 0.21 -8.09 16 20 C 0.09 1.83 11.43 83.51 0.95 2.78 16 21 N -0.35 -7.22 3.63 -351.84 -1.28 -8.49 16 22 C 0.18 2.17 6.89 85.63 0.59 2.76 16 23 C 0.09 1.43 6.24 42.55 0.27 1.69 16 24 C -0.16 -1.85 9.71 22.36 0.22 -1.63 16 25 C -0.08 -0.84 10.18 22.47 0.23 -0.61 16 26 C -0.17 -2.01 10.11 22.36 0.23 -1.78 16 27 C 0.08 1.30 11.18 84.67 0.95 2.25 16 28 N -0.50 -10.32 10.22 -183.88 -1.88 -12.19 16 29 N -0.33 -9.61 12.42 -54.54 -0.68 -10.29 16 30 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.07 4.05 6.07 -2.39 -0.01 4.03 16 32 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.27 14.22 8.31 -92.70 -0.77 13.45 16 34 H 0.41 16.49 8.01 -92.71 -0.74 15.75 16 35 H 0.43 13.36 8.29 -92.71 -0.77 12.59 16 36 H 0.16 4.84 5.91 -2.91 -0.02 4.82 16 37 H 0.22 2.04 8.06 -2.91 -0.02 2.02 16 38 H 0.13 0.86 7.87 -2.39 -0.02 0.85 16 39 H 0.15 0.75 8.07 -2.39 -0.02 0.73 16 40 H 0.16 0.97 7.95 -2.91 -0.02 0.95 16 41 H 0.16 0.72 8.06 -2.91 -0.02 0.69 16 42 H 0.16 1.00 8.06 -2.91 -0.02 0.98 16 43 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -74.53 378.00 1.51 -73.02 By element: Atomic # 1 Polarization: 34.33 SS G_CDS: -0.43 Total: 33.91 kcal Atomic # 6 Polarization: 21.21 SS G_CDS: 7.54 Total: 28.75 kcal Atomic # 7 Polarization: -127.58 SS G_CDS: -7.53 Total: -135.12 kcal Atomic # 8 Polarization: -44.50 SS G_CDS: -0.10 Total: -44.60 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.03 kcal Total: -74.53 1.51 -73.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320711696.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.327 kcal (2) G-P(sol) polarization free energy of solvation -74.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds