Wall clock time and date at job start Wed Apr 1 2020 01:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46812 * 2 1 4 4 C 1.50695 * 109.47063 * 239.99851 * 2 1 3 5 5 H 1.07998 * 120.00418 * 245.62304 * 4 2 1 6 6 C 1.37879 * 120.00201 * 65.62961 * 4 2 1 7 7 N 1.31514 * 120.00393 * 197.18198 * 6 4 2 8 8 Si 1.86804 * 119.99786 * 17.45333 * 6 4 2 9 9 H 1.48502 * 109.47029 * 179.72709 * 8 6 4 10 10 H 1.48503 * 109.46948 * 299.72609 * 8 6 4 11 11 H 1.48492 * 109.47033 * 59.72641 * 8 6 4 12 12 N 1.46502 * 109.47016 * 119.99690 * 2 1 3 13 13 C 1.34775 * 120.00053 * 275.00255 * 12 2 1 14 14 O 1.21361 * 120.00176 * 359.97438 * 13 12 2 15 15 C 1.49309 * 119.99949 * 180.02562 * 13 12 2 16 16 O 1.21396 * 119.99740 * 359.97438 * 15 13 12 17 17 N 1.34775 * 119.99949 * 180.02562 * 15 13 12 18 18 C 1.39196 * 119.99998 * 179.97438 * 17 15 13 19 19 C 1.36215 * 126.27074 * 359.68618 * 18 17 15 20 20 C 1.39698 * 107.85998 * 179.90550 * 19 18 17 21 21 N 1.30849 * 108.45433 * 0.36814 * 20 19 18 22 22 N 1.35851 * 126.27432 * 180.02562 * 18 17 15 23 23 C 1.46501 * 126.09609 * 359.93866 * 22 18 17 24 24 C 1.50700 * 109.47100 * 90.00225 * 23 22 18 25 25 C 1.38227 * 119.61461 * 124.72907 * 24 23 22 26 26 C 1.38632 * 119.15534 * 179.75521 * 25 24 23 27 27 C 1.38670 * 118.42141 * 0.50800 * 26 25 24 28 28 C 1.38174 * 119.16539 * 359.73103 * 27 26 25 29 29 N 1.31853 * 119.61744 * 305.00192 * 24 23 22 30 30 H 1.09000 * 109.46665 * 186.33884 * 1 2 3 31 31 H 1.08994 * 109.46957 * 306.33629 * 1 2 3 32 32 H 1.09002 * 109.47065 * 66.34399 * 1 2 3 33 33 H 0.97001 * 119.99221 * 355.17115 * 7 6 4 34 34 H 0.96996 * 119.99659 * 94.99859 * 12 2 1 35 35 H 0.96994 * 120.00190 * 359.97438 * 17 15 13 36 36 H 1.08003 * 126.07419 * 0.03380 * 19 18 17 37 37 H 1.07995 * 125.76967 * 180.14180 * 20 19 18 38 38 H 1.09006 * 109.46903 * 210.00180 * 23 22 18 39 39 H 1.09002 * 109.46979 * 330.00107 * 23 22 18 40 40 H 1.07998 * 120.42452 * 359.97438 * 25 24 23 41 41 H 1.08002 * 120.78992 * 180.26010 * 26 25 24 42 42 H 1.08007 * 120.41604 * 179.71032 * 27 26 25 43 43 H 1.07999 * 119.62441 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5763 -1.6384 -1.1340 6 6 1.7977 -0.1756 -2.4794 7 7 1.9225 -0.9278 -3.5509 8 14 1.3097 1.6194 -2.6501 9 1 1.1227 1.9471 -4.0864 10 1 0.0398 1.8589 -1.9184 11 1 2.3784 2.4792 -2.0813 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8588 1.1595 2.4115 15 6 2.6453 -0.7218 3.5762 16 8 2.9340 -1.8997 3.5216 17 7 2.7734 -0.0496 4.7372 18 6 3.2374 -0.7057 5.8738 19 6 3.5911 -2.0184 5.9585 20 6 4.0008 -2.2679 7.2706 21 7 3.8934 -1.1585 7.9561 22 7 3.4143 -0.1558 7.1034 23 6 3.1517 1.2376 7.4716 24 6 1.7268 1.3725 7.9434 25 6 1.4680 1.9124 9.1892 26 6 0.1534 2.0368 9.6115 27 6 -0.8556 1.6017 8.7656 28 6 -0.5200 1.0675 7.5363 29 7 0.7418 0.9691 7.1652 30 1 -0.3633 -1.0214 0.1135 31 1 -0.3633 0.6089 0.8278 32 1 -0.3633 0.4124 -0.9413 33 1 2.2471 -1.8383 -3.4691 34 1 2.2490 -1.6317 1.1527 35 1 2.5424 0.8914 4.7809 36 1 3.5621 -2.7381 5.1537 37 1 4.3442 -3.2169 7.6550 38 1 3.8292 1.5358 8.2718 39 1 3.3095 1.8785 6.6042 40 1 2.2793 2.2366 9.8241 41 1 -0.0792 2.4588 10.5781 42 1 -1.8907 1.6790 9.0641 43 1 -1.2999 0.7267 6.8714 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320897226.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:44 Heat of formation + Delta-G solvation = 59.855116 kcal Electronic energy + Delta-G solvation = -29057.764757 eV Core-core repulsion = 24912.596103 eV Total energy + Delta-G solvation = -4145.168654 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.68473 -40.53528 -40.06436 -38.25954 -35.61717 -34.86346 -34.34802 -32.80286 -32.50615 -31.11228 -29.97985 -29.18785 -27.04554 -25.26504 -24.66895 -23.97696 -22.87535 -21.97824 -20.99953 -20.11593 -19.67960 -18.88318 -17.85774 -17.36446 -16.95117 -16.70625 -16.35721 -16.23370 -15.75935 -15.30659 -14.90253 -14.80017 -14.55224 -14.09143 -13.79870 -13.68451 -13.57457 -13.40009 -13.26899 -13.19100 -12.78727 -12.55060 -12.27809 -12.18996 -11.86781 -11.53878 -11.37348 -11.11637 -10.67221 -10.55438 -10.31190 -10.11544 -9.93628 -9.85970 -9.51611 -9.31751 -9.17415 -9.10371 -8.47458 -8.38536 -8.14928 -6.64805 -4.28700 0.56985 0.85337 1.27587 1.89908 2.09235 2.71519 2.88962 3.33053 3.39591 3.39717 3.52712 3.54847 3.74131 3.86678 4.12999 4.36253 4.40061 4.45859 4.63971 4.68402 4.82609 4.84352 4.98930 5.09694 5.11201 5.27702 5.33874 5.49629 5.64725 5.72802 5.83054 6.03747 6.22623 6.25959 6.41869 6.53326 6.64273 6.77680 6.80934 6.92628 7.11250 7.20513 7.45959 7.54864 7.65465 7.73843 8.14424 8.22690 8.43115 8.73651 9.40684 10.76701 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.014695 B = 0.002700 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.013831 B =10367.412110 C =11636.956365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.240 3.760 3 H 0.046 0.954 4 C -0.621 4.621 5 H 0.065 0.935 6 C 0.040 3.960 7 N -0.893 5.893 8 Si 1.042 2.958 9 H -0.282 1.282 10 H -0.271 1.271 11 H -0.279 1.279 12 N -0.659 5.659 13 C 0.502 3.498 14 O -0.535 6.535 15 C 0.516 3.484 16 O -0.488 6.488 17 N -0.619 5.619 18 C 0.329 3.671 19 C -0.284 4.284 20 C 0.063 3.937 21 N -0.294 5.294 22 N -0.383 5.383 23 C 0.186 3.814 24 C 0.099 3.901 25 C -0.152 4.152 26 C -0.075 4.075 27 C -0.167 4.167 28 C 0.107 3.893 29 N -0.468 5.468 30 H 0.048 0.952 31 H 0.031 0.969 32 H 0.067 0.933 33 H 0.271 0.729 34 H 0.408 0.592 35 H 0.423 0.577 36 H 0.174 0.826 37 H 0.186 0.814 38 H 0.117 0.883 39 H 0.105 0.895 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.469 5.329 26.960 27.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.138 3.862 3 H 0.064 0.936 4 C -0.659 4.659 5 H 0.083 0.917 6 C -0.167 4.167 7 N -0.526 5.526 8 Si 0.869 3.131 9 H -0.208 1.208 10 H -0.197 1.197 11 H -0.205 1.205 12 N -0.308 5.308 13 C 0.280 3.720 14 O -0.413 6.413 15 C 0.298 3.702 16 O -0.360 6.360 17 N -0.267 5.267 18 C 0.109 3.891 19 C -0.316 4.316 20 C -0.123 4.123 21 N -0.116 5.116 22 N -0.171 5.171 23 C 0.063 3.937 24 C -0.040 4.040 25 C -0.172 4.172 26 C -0.101 4.101 27 C -0.187 4.187 28 C -0.051 4.051 29 N -0.177 5.177 30 H 0.067 0.933 31 H 0.050 0.950 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.243 0.757 35 H 0.260 0.740 36 H 0.191 0.809 37 H 0.203 0.797 38 H 0.135 0.865 39 H 0.123 0.877 40 H 0.156 0.844 41 H 0.155 0.845 42 H 0.155 0.845 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -1.603 6.777 26.027 26.943 hybrid contribution 0.002 -1.167 1.320 1.762 sum -1.602 5.610 27.347 27.962 Atomic orbital electron populations 1.22524 0.98216 1.00593 1.00766 1.19242 0.91033 0.94301 0.81648 0.93602 1.22057 1.42226 1.10876 0.90765 0.91659 1.25699 0.94230 1.05159 0.91591 1.70870 1.40448 1.10039 1.31242 0.84086 0.77590 0.74982 0.76433 1.20754 1.19690 1.20530 1.46235 1.61239 1.14757 1.08571 1.19514 0.81012 0.87190 0.84300 1.90730 1.50835 1.15141 1.84619 1.20729 0.78440 0.87032 0.84002 1.90692 1.45896 1.15207 1.84159 1.42447 1.62812 1.15086 1.06392 1.18023 0.98341 0.91655 0.81062 1.21684 1.15724 0.94454 0.99689 1.23734 0.98672 0.97248 0.92673 1.77400 1.22463 0.96507 1.15202 1.48500 1.54490 1.08968 1.05182 1.20424 0.91386 0.78804 1.03084 1.21388 0.95075 0.95884 0.91622 1.21912 0.98014 1.00848 0.96445 1.21599 0.92491 0.96366 0.99656 1.22229 1.00851 0.99958 0.95660 1.22807 0.93011 0.94662 0.94600 1.67420 1.00465 1.14829 1.34957 0.93321 0.94973 0.91436 0.91910 0.75697 0.73951 0.80903 0.79747 0.86521 0.87688 0.84422 0.84516 0.84503 0.82406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.54 9.16 37.16 0.34 -3.20 16 2 C 0.24 5.61 2.14 -69.08 -0.15 5.47 16 3 H 0.05 1.13 6.23 -51.93 -0.32 0.81 16 4 C -0.62 -16.53 9.00 -34.44 -0.31 -16.84 16 5 H 0.07 1.83 7.96 -52.49 -0.42 1.41 16 6 C 0.04 1.11 5.29 -17.82 -0.09 1.02 16 7 N -0.89 -26.17 13.70 55.43 0.76 -25.41 16 8 Si 1.04 24.23 26.29 -169.99 -4.47 19.76 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.27 -5.83 5.76 56.52 0.33 -5.50 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 12 N -0.66 -13.51 5.06 -55.41 -0.28 -13.79 16 13 C 0.50 9.53 7.85 -11.65 -0.09 9.44 16 14 O -0.53 -10.94 16.14 5.49 0.09 -10.85 16 15 C 0.52 8.63 7.85 -11.65 -0.09 8.54 16 16 O -0.49 -8.66 13.60 5.46 0.07 -8.59 16 17 N -0.62 -8.93 5.40 -11.80 -0.06 -8.99 16 18 C 0.33 4.69 7.68 -152.86 -1.17 3.51 16 19 C -0.28 -4.10 9.65 -39.76 -0.38 -4.49 16 20 C 0.06 0.78 12.00 -17.43 -0.21 0.57 16 21 N -0.29 -3.87 12.56 30.59 0.38 -3.49 16 22 N -0.38 -4.78 3.58 -61.47 -0.22 -5.00 16 23 C 0.19 1.69 6.65 -5.19 -0.03 1.65 16 24 C 0.10 0.97 6.39 -82.59 -0.53 0.44 16 25 C -0.15 -1.13 9.71 -39.44 -0.38 -1.51 16 26 C -0.08 -0.49 10.18 -39.28 -0.40 -0.89 16 27 C -0.17 -1.20 10.11 -39.45 -0.40 -1.60 16 28 C 0.11 1.02 11.18 -17.55 -0.20 0.82 16 29 N -0.47 -5.42 10.22 -9.48 -0.10 -5.51 16 30 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.07 1.50 4.88 -51.93 -0.25 1.25 16 33 H 0.27 7.87 8.73 -40.82 -0.36 7.52 16 34 H 0.41 7.97 7.99 -40.82 -0.33 7.64 16 35 H 0.42 5.60 7.46 -40.82 -0.30 5.30 16 36 H 0.17 2.66 5.83 -52.48 -0.31 2.36 16 37 H 0.19 1.62 8.06 -52.49 -0.42 1.19 16 38 H 0.12 0.76 7.87 -51.93 -0.41 0.35 16 39 H 0.11 0.81 7.52 -51.93 -0.39 0.42 16 40 H 0.14 0.66 7.95 -52.49 -0.42 0.25 16 41 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 42 H 0.14 0.63 8.06 -52.48 -0.42 0.21 16 43 H 0.16 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 372.30 15.07 5.61 5.61 Total: -1.00 -33.20 372.30 -7.23 -40.43 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -4.91 Total: 12.89 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: -4.10 Total: 2.94 kcal Atomic # 7 Polarization: -62.68 SS G_CDS: 0.48 Total: -62.20 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: 0.16 Total: -19.44 kcal Atomic # 14 Polarization: 24.23 SS G_CDS: -4.47 Total: 19.76 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.20 -7.23 -40.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320897226.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.286 kcal (2) G-P(sol) polarization free energy of solvation -33.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds