Wall clock time and date at job start Wed Apr 1 2020 01:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47032 * 2 1 4 4 C 1.50693 * 109.47652 * 239.99559 * 2 1 3 5 5 C 1.38649 * 120.79283 * 291.66823 * 4 2 1 6 6 C 1.38203 * 119.16319 * 179.75313 * 5 4 2 7 7 N 1.31863 * 120.76575 * 0.53035 * 6 5 4 8 8 C 1.31876 * 121.72689 * 359.74301 * 7 6 5 9 9 C 1.38200 * 120.76150 * 359.97438 * 8 7 6 10 10 N 1.46503 * 109.46900 * 119.99473 * 2 1 3 11 11 C 1.46498 * 119.99769 * 54.36408 * 10 2 1 12 12 C 1.34779 * 120.00346 * 234.36008 * 10 2 1 13 13 O 1.21367 * 119.99841 * 5.87583 * 12 10 2 14 14 C 1.49301 * 120.00217 * 185.87588 * 12 10 2 15 15 O 1.21407 * 120.00139 * 359.31769 * 14 12 10 16 16 N 1.34779 * 120.00251 * 179.04103 * 14 12 10 17 17 C 1.40295 * 120.00425 * 179.97438 * 16 14 12 18 18 C 1.40718 * 126.09676 * 359.69171 * 17 16 14 19 19 N 1.30876 * 108.37568 * 179.85101 * 18 17 16 20 20 N 1.40064 * 108.43608 * 0.40468 * 19 18 17 21 21 C 1.37292 * 126.05676 * 179.71462 * 20 19 18 22 22 H 1.07998 * 119.99792 * 180.02562 * 21 20 19 23 23 C 1.39004 * 120.00056 * 0.03185 * 21 20 19 24 24 N 1.31286 * 119.99935 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99902 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47111 * 89.99614 * 25 23 21 27 27 H 1.48500 * 109.46976 * 209.99665 * 25 23 21 28 28 H 1.48503 * 109.47109 * 329.99324 * 25 23 21 29 29 C 1.35786 * 126.09877 * 179.97438 * 17 16 14 30 30 H 1.08999 * 109.47032 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47340 * 300.00461 * 1 2 3 32 32 H 1.09002 * 109.46576 * 60.00709 * 1 2 3 33 33 H 1.07999 * 120.41566 * 359.97438 * 5 4 2 34 34 H 1.08008 * 119.61643 * 180.24993 * 6 5 4 35 35 H 1.07994 * 119.61948 * 180.02562 * 8 7 6 36 36 H 1.07998 * 120.42130 * 180.02562 * 9 8 7 37 37 H 1.09003 * 109.47086 * 215.56839 * 11 10 2 38 38 H 1.08999 * 109.47448 * 335.55965 * 11 10 2 39 39 H 1.08996 * 109.47693 * 95.56577 * 11 10 2 40 40 H 0.96999 * 119.99630 * 359.97438 * 16 14 12 41 41 H 1.08007 * 125.81514 * 359.97438 * 18 17 16 42 42 H 0.96999 * 119.99650 * 179.97438 * 24 23 21 43 43 H 1.07996 * 126.25284 * 359.97438 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2303 5 6 1.8545 -2.0769 -1.3833 6 6 2.3242 -2.6933 -2.5276 7 7 2.9441 -1.9991 -3.4617 8 6 3.1359 -0.6994 -3.3475 9 6 2.6887 -0.0141 -2.2338 10 7 2.0183 -0.6905 1.1963 11 6 1.5654 -2.0520 1.4922 12 6 2.8841 -0.0733 2.0245 13 8 3.1769 1.0898 1.8391 14 6 3.4830 -0.8205 3.1700 15 8 3.1807 -1.9804 3.3628 16 7 4.3637 -0.2090 3.9868 17 6 4.9261 -0.9108 5.0635 18 6 4.6591 -2.2479 5.4116 19 7 5.3713 -2.5494 6.4674 20 7 6.1110 -1.4199 6.8401 21 6 6.9749 -1.3345 7.9038 22 1 7.4969 -0.4102 8.1026 23 6 7.1777 -2.4378 8.7247 24 7 6.5428 -3.5613 8.4832 25 14 8.3536 -2.3218 10.1715 26 1 7.6121 -1.8726 11.3772 27 1 8.9552 -3.6549 10.4285 28 1 9.4282 -1.3456 9.8590 29 6 5.8210 -0.4195 5.9588 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5137 -0.8901 33 1 1.3519 -2.6518 -0.6195 34 1 2.1859 -3.7568 -2.6562 35 1 3.6476 -0.1642 -4.1336 36 1 2.8484 1.0504 -2.1461 37 1 1.4660 -2.1754 2.5707 38 1 0.6003 -2.2255 1.0163 39 1 2.2929 -2.7681 1.1102 40 1 4.6086 0.7164 3.8301 41 1 3.9833 -2.9128 4.8942 42 1 6.6846 -4.3312 9.0559 43 1 6.2286 0.5805 5.9711 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324220690.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:43:06 Heat of formation + Delta-G solvation = 75.645393 kcal Electronic energy + Delta-G solvation = -28958.132952 eV Core-core repulsion = 24813.649016 eV Total energy + Delta-G solvation = -4144.483936 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.10895 -40.29026 -39.53765 -38.08602 -36.83583 -34.50454 -33.33631 -32.98096 -31.50140 -30.47459 -30.33205 -28.12356 -27.36923 -25.73072 -24.74894 -23.70550 -23.61486 -21.49620 -20.93077 -19.72243 -19.48249 -17.83200 -17.49284 -17.17312 -16.98290 -16.13173 -15.94225 -15.85558 -15.54624 -15.17408 -15.00499 -14.41173 -14.27588 -14.06761 -13.87211 -13.74518 -13.73363 -13.31785 -13.05232 -12.94376 -12.66263 -12.54367 -12.32785 -11.83938 -11.75302 -11.50882 -11.47485 -11.30848 -11.14749 -10.88632 -10.57569 -10.32705 -9.97525 -9.81277 -9.41989 -9.26759 -9.01198 -8.94019 -8.87351 -8.16417 -6.81635 -6.63396 -4.30790 0.86512 0.88445 1.56556 2.41238 2.90659 3.01846 3.06867 3.24722 3.51366 3.64434 3.67141 3.83033 4.12076 4.20909 4.33146 4.42035 4.52279 4.70528 4.80765 4.84668 4.89472 4.95292 4.95375 4.98240 5.25905 5.33933 5.42149 5.50092 5.55179 5.63135 5.77022 5.89167 6.00256 6.15391 6.21970 6.31937 6.41019 6.71103 6.85323 6.86412 7.00552 7.13232 7.61669 7.69922 7.78498 8.03997 8.14569 8.43949 8.65648 9.27790 9.56369 10.32370 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.023332 B = 0.002126 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.783820 B =13166.541479 C =13379.930242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.172 3.828 3 H 0.115 0.885 4 C -0.052 4.052 5 C -0.166 4.166 6 C 0.098 3.902 7 N -0.486 5.486 8 C 0.098 3.902 9 C -0.160 4.160 10 N -0.584 5.584 11 C 0.067 3.933 12 C 0.517 3.483 13 O -0.528 6.528 14 C 0.484 3.516 15 O -0.516 6.516 16 N -0.582 5.582 17 C -0.070 4.070 18 C -0.026 4.026 19 N -0.261 5.261 20 N -0.138 5.138 21 C -0.321 4.321 22 H 0.118 0.882 23 C 0.046 3.954 24 N -0.767 5.767 25 Si 0.936 3.064 26 H -0.270 1.270 27 H -0.275 1.275 28 H -0.263 1.263 29 C -0.078 4.078 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.142 0.858 34 H 0.156 0.844 35 H 0.156 0.844 36 H 0.136 0.864 37 H 0.106 0.894 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.409 0.591 41 H 0.178 0.822 42 H 0.276 0.724 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.484 5.804 -17.090 20.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.069 3.931 3 H 0.133 0.867 4 C -0.061 4.061 5 C -0.185 4.185 6 C -0.058 4.058 7 N -0.195 5.195 8 C -0.059 4.059 9 C -0.180 4.180 10 N -0.318 5.318 11 C -0.075 4.075 12 C 0.301 3.699 13 O -0.404 6.404 14 C 0.265 3.735 15 O -0.394 6.394 16 N -0.224 5.224 17 C -0.176 4.176 18 C -0.202 4.202 19 N -0.091 5.091 20 N 0.096 4.904 21 C -0.454 4.454 22 H 0.136 0.864 23 C -0.171 4.171 24 N -0.393 5.393 25 Si 0.760 3.240 26 H -0.195 1.195 27 H -0.200 1.200 28 H -0.187 1.187 29 C -0.229 4.229 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.160 0.840 34 H 0.174 0.826 35 H 0.173 0.827 36 H 0.154 0.846 37 H 0.124 0.876 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.244 0.756 41 H 0.195 0.805 42 H 0.087 0.913 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -9.957 4.013 -16.844 19.975 hybrid contribution 0.182 1.603 0.613 1.726 sum -9.775 5.616 -16.232 19.763 Atomic orbital electron populations 1.22141 0.92951 1.03174 1.03248 1.20041 0.94907 0.97333 0.80827 0.86735 1.20555 0.95742 0.94415 0.95394 1.22350 1.01676 0.94967 0.99552 1.22796 0.93372 1.00277 0.89380 1.67673 1.13247 1.08446 1.30176 1.22762 0.96284 0.90267 0.96573 1.22075 0.99230 1.01696 0.95011 1.47661 1.44139 1.17099 1.22905 1.22443 0.98943 0.81088 1.05018 1.20390 0.79392 0.86645 0.83489 1.90713 1.60508 1.16168 1.72996 1.19524 0.82546 0.87309 0.84094 1.90602 1.60338 1.16289 1.72220 1.42154 1.39706 1.15009 1.25523 1.17241 1.09135 0.94734 0.96447 1.24141 1.03764 0.94143 0.98105 1.78265 1.10009 1.06303 1.14556 1.44567 1.24229 1.05636 1.16003 1.19928 1.21033 1.00710 1.03700 0.86427 1.25670 0.97607 0.94615 0.99248 1.70206 1.33791 1.01064 1.34287 0.85802 0.79636 0.78604 0.79992 1.19508 1.20021 1.18728 1.21307 1.07842 0.96061 0.97697 0.91546 0.91087 0.90859 0.84037 0.82627 0.82662 0.84567 0.87566 0.91502 0.91727 0.75639 0.80538 0.91332 0.83367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.12 8.97 37.16 0.33 -0.79 16 2 C 0.17 1.65 2.98 -69.08 -0.21 1.44 16 3 H 0.11 1.19 6.74 -51.93 -0.35 0.84 16 4 C -0.05 -0.49 4.97 -104.32 -0.52 -1.01 16 5 C -0.17 -1.50 8.54 -39.44 -0.34 -1.83 16 6 C 0.10 0.93 11.18 -17.55 -0.20 0.74 16 7 N -0.49 -5.31 10.36 -13.25 -0.14 -5.44 16 8 C 0.10 0.91 11.18 -17.55 -0.20 0.71 16 9 C -0.16 -1.43 9.77 -39.44 -0.39 -1.82 16 10 N -0.58 -6.93 2.75 -175.83 -0.48 -7.42 16 11 C 0.07 0.70 7.06 59.85 0.42 1.13 16 12 C 0.52 7.74 7.72 -11.65 -0.09 7.65 16 13 O -0.53 -8.48 15.82 5.48 0.09 -8.39 16 14 C 0.48 8.49 7.73 -11.65 -0.09 8.40 16 15 O -0.52 -9.75 10.40 5.45 0.06 -9.70 16 16 N -0.58 -10.76 5.45 -10.46 -0.06 -10.82 16 17 C -0.07 -1.58 6.90 -83.92 -0.58 -2.16 16 18 C -0.03 -0.65 10.84 -17.02 -0.18 -0.84 16 19 N -0.26 -7.36 10.39 30.81 0.32 -7.04 16 20 N -0.14 -3.70 3.73 -11.40 -0.04 -3.74 16 21 C -0.32 -8.32 10.25 -14.82 -0.15 -8.47 16 22 H 0.12 2.72 7.83 -52.49 -0.41 2.31 16 23 C 0.05 1.17 5.50 -17.50 -0.10 1.07 16 24 N -0.77 -20.94 11.81 55.50 0.66 -20.29 16 25 Si 0.94 18.52 29.55 -169.99 -5.02 13.50 16 26 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 27 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 28 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 29 C -0.08 -1.80 11.50 -16.38 -0.19 -1.99 16 30 H 0.07 0.42 6.30 -51.93 -0.33 0.09 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.14 1.06 4.86 -52.49 -0.26 0.81 16 34 H 0.16 1.10 8.06 -52.48 -0.42 0.67 16 35 H 0.16 1.04 8.06 -52.49 -0.42 0.61 16 36 H 0.14 0.97 8.02 -52.49 -0.42 0.55 16 37 H 0.11 1.33 5.81 -51.93 -0.30 1.03 16 38 H 0.07 0.50 5.19 -51.93 -0.27 0.23 16 39 H 0.06 0.71 7.36 -51.93 -0.38 0.33 16 40 H 0.41 6.56 8.29 -40.82 -0.34 6.23 16 41 H 0.18 4.28 5.92 -52.48 -0.31 3.97 16 42 H 0.28 6.88 8.31 -40.82 -0.34 6.54 16 43 H 0.15 2.89 8.06 -52.49 -0.42 2.46 16 LS Contribution 361.75 15.07 5.45 5.45 Total: -1.00 -33.06 361.75 -6.25 -39.31 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -4.62 Total: 12.33 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: -2.46 Total: 2.24 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: 0.26 Total: -54.74 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: 0.14 Total: -18.09 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.02 Total: 13.50 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.06 -6.25 -39.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324220690.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.959 kcal (2) G-P(sol) polarization free energy of solvation -33.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds