Wall clock time and date at job start Wed Apr 1 2020 01:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47032 * 2 1 4 4 C 1.50693 * 109.47652 * 239.99559 * 2 1 3 5 5 C 1.38649 * 120.79283 * 291.66823 * 4 2 1 6 6 C 1.38203 * 119.16319 * 179.75313 * 5 4 2 7 7 N 1.31863 * 120.76575 * 0.53035 * 6 5 4 8 8 C 1.31876 * 121.72689 * 359.74301 * 7 6 5 9 9 C 1.38200 * 120.76150 * 359.97438 * 8 7 6 10 10 N 1.46503 * 109.46900 * 119.99473 * 2 1 3 11 11 C 1.46498 * 119.99769 * 54.36408 * 10 2 1 12 12 C 1.34779 * 120.00346 * 234.36008 * 10 2 1 13 13 O 1.21367 * 119.99841 * 5.87583 * 12 10 2 14 14 C 1.49301 * 120.00217 * 185.87588 * 12 10 2 15 15 O 1.21407 * 120.00139 * 359.31769 * 14 12 10 16 16 N 1.34779 * 120.00251 * 179.04103 * 14 12 10 17 17 C 1.40295 * 120.00425 * 179.97438 * 16 14 12 18 18 C 1.40718 * 126.09676 * 359.69171 * 17 16 14 19 19 N 1.30876 * 108.37568 * 179.85101 * 18 17 16 20 20 N 1.40064 * 108.43608 * 0.40468 * 19 18 17 21 21 C 1.37292 * 126.05676 * 179.71462 * 20 19 18 22 22 H 1.07998 * 119.99792 * 180.02562 * 21 20 19 23 23 C 1.39004 * 120.00056 * 0.03185 * 21 20 19 24 24 N 1.31286 * 119.99935 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99902 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47111 * 89.99614 * 25 23 21 27 27 H 1.48500 * 109.46976 * 209.99665 * 25 23 21 28 28 H 1.48503 * 109.47109 * 329.99324 * 25 23 21 29 29 C 1.35786 * 126.09877 * 179.97438 * 17 16 14 30 30 H 1.08999 * 109.47032 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47340 * 300.00461 * 1 2 3 32 32 H 1.09002 * 109.46576 * 60.00709 * 1 2 3 33 33 H 1.07999 * 120.41566 * 359.97438 * 5 4 2 34 34 H 1.08008 * 119.61643 * 180.24993 * 6 5 4 35 35 H 1.07994 * 119.61948 * 180.02562 * 8 7 6 36 36 H 1.07998 * 120.42130 * 180.02562 * 9 8 7 37 37 H 1.09003 * 109.47086 * 215.56839 * 11 10 2 38 38 H 1.08999 * 109.47448 * 335.55965 * 11 10 2 39 39 H 1.08996 * 109.47693 * 95.56577 * 11 10 2 40 40 H 0.96999 * 119.99630 * 359.97438 * 16 14 12 41 41 H 1.08007 * 125.81514 * 359.97438 * 18 17 16 42 42 H 0.96999 * 119.99650 * 179.97438 * 24 23 21 43 43 H 1.07996 * 126.25284 * 359.97438 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2303 5 6 1.8545 -2.0769 -1.3833 6 6 2.3242 -2.6933 -2.5276 7 7 2.9441 -1.9991 -3.4617 8 6 3.1359 -0.6994 -3.3475 9 6 2.6887 -0.0141 -2.2338 10 7 2.0183 -0.6905 1.1963 11 6 1.5654 -2.0520 1.4922 12 6 2.8841 -0.0733 2.0245 13 8 3.1769 1.0898 1.8391 14 6 3.4830 -0.8205 3.1700 15 8 3.1807 -1.9804 3.3628 16 7 4.3637 -0.2090 3.9868 17 6 4.9261 -0.9108 5.0635 18 6 4.6591 -2.2479 5.4116 19 7 5.3713 -2.5494 6.4674 20 7 6.1110 -1.4199 6.8401 21 6 6.9749 -1.3345 7.9038 22 1 7.4969 -0.4102 8.1026 23 6 7.1777 -2.4378 8.7247 24 7 6.5428 -3.5613 8.4832 25 14 8.3536 -2.3218 10.1715 26 1 7.6121 -1.8726 11.3772 27 1 8.9552 -3.6549 10.4285 28 1 9.4282 -1.3456 9.8590 29 6 5.8210 -0.4195 5.9588 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5137 -0.8901 33 1 1.3519 -2.6518 -0.6195 34 1 2.1859 -3.7568 -2.6562 35 1 3.6476 -0.1642 -4.1336 36 1 2.8484 1.0504 -2.1461 37 1 1.4660 -2.1754 2.5707 38 1 0.6003 -2.2255 1.0163 39 1 2.2929 -2.7681 1.1102 40 1 4.6086 0.7164 3.8301 41 1 3.9833 -2.9128 4.8942 42 1 6.6846 -4.3312 9.0559 43 1 6.2286 0.5805 5.9711 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324220690.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:43:05 Heat of formation + Delta-G solvation = 53.206557 kcal Electronic energy + Delta-G solvation = -28959.105973 eV Core-core repulsion = 24813.649016 eV Total energy + Delta-G solvation = -4145.456957 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.26122 -41.55872 -40.91447 -39.47943 -37.85198 -36.07676 -35.03367 -33.97538 -32.29498 -32.18367 -31.15818 -29.89259 -28.30708 -27.28016 -26.04082 -24.72676 -24.34841 -22.99804 -22.32951 -21.32522 -20.81190 -19.43380 -18.80757 -18.24682 -17.85382 -17.44224 -17.08506 -17.02265 -16.74262 -16.67001 -16.08856 -15.71617 -15.59248 -15.23888 -14.98323 -14.86921 -14.84499 -14.60949 -14.41315 -14.06695 -13.60231 -13.50970 -13.36361 -13.25231 -13.00630 -12.91012 -12.86356 -12.50980 -12.37186 -12.09152 -12.08446 -11.94468 -11.06797 -10.86948 -10.73878 -10.56384 -10.28405 -10.14149 -10.09873 -9.91047 -8.61826 -8.49252 -6.26643 0.12210 0.18944 0.27931 1.24238 1.28921 1.41406 1.58153 1.71151 2.01077 2.10283 2.41955 2.52263 2.81335 2.88770 3.07319 3.36964 3.43940 3.59497 3.77235 4.03505 4.11033 4.14890 4.23726 4.29290 4.39228 4.52269 4.61919 4.65640 4.71998 4.78769 4.85306 4.94911 4.95053 4.98031 5.03754 5.16910 5.19910 5.26215 5.31883 5.40589 5.74685 5.85114 5.92080 6.19693 6.38004 6.64745 6.72240 7.00986 7.05996 7.40879 7.63079 8.49926 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.023332 B = 0.002126 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.783820 B =13166.541479 C =13379.930242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.172 3.828 3 H 0.108 0.892 4 C -0.062 4.062 5 C -0.168 4.168 6 C 0.087 3.913 7 N -0.513 5.513 8 C 0.088 3.912 9 C -0.163 4.163 10 N -0.573 5.573 11 C 0.065 3.935 12 C 0.522 3.478 13 O -0.540 6.540 14 C 0.485 3.515 15 O -0.529 6.529 16 N -0.584 5.584 17 C -0.055 4.055 18 C -0.046 4.046 19 N -0.308 5.308 20 N -0.164 5.164 21 C -0.353 4.353 22 H 0.141 0.859 23 C -0.005 4.005 24 N -0.821 5.821 25 Si 1.019 2.981 26 H -0.264 1.264 27 H -0.276 1.276 28 H -0.246 1.246 29 C -0.077 4.077 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.156 0.844 34 H 0.174 0.826 35 H 0.177 0.823 36 H 0.153 0.847 37 H 0.086 0.914 38 H 0.104 0.896 39 H 0.061 0.939 40 H 0.422 0.578 41 H 0.179 0.821 42 H 0.278 0.722 43 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.820 7.300 -18.025 22.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.070 3.930 3 H 0.126 0.874 4 C -0.071 4.071 5 C -0.187 4.187 6 C -0.069 4.069 7 N -0.222 5.222 8 C -0.068 4.068 9 C -0.183 4.183 10 N -0.305 5.305 11 C -0.076 4.076 12 C 0.304 3.696 13 O -0.417 6.417 14 C 0.267 3.733 15 O -0.407 6.407 16 N -0.228 5.228 17 C -0.161 4.161 18 C -0.221 4.221 19 N -0.139 5.139 20 N 0.068 4.932 21 C -0.484 4.484 22 H 0.158 0.842 23 C -0.217 4.217 24 N -0.448 5.448 25 Si 0.837 3.163 26 H -0.188 1.188 27 H -0.201 1.201 28 H -0.169 1.169 29 C -0.227 4.227 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.108 0.892 33 H 0.173 0.827 34 H 0.191 0.809 35 H 0.194 0.806 36 H 0.171 0.829 37 H 0.104 0.896 38 H 0.122 0.878 39 H 0.079 0.921 40 H 0.259 0.741 41 H 0.195 0.805 42 H 0.088 0.912 43 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -10.328 5.529 -17.833 21.337 hybrid contribution 0.144 1.167 0.678 1.357 sum -10.184 6.696 -17.155 21.044 Atomic orbital electron populations 1.22135 0.90708 1.04152 1.03994 1.20228 0.96537 0.96610 0.79598 0.87356 1.20625 0.96252 0.94770 0.95478 1.22508 1.01548 0.94936 0.99742 1.23161 0.93167 1.01256 0.89345 1.67694 1.14122 1.09350 1.31074 1.23156 0.96261 0.90046 0.97322 1.22300 0.98679 1.02609 0.94745 1.47760 1.42519 1.17426 1.22787 1.22488 1.00732 0.80255 1.04149 1.19813 0.80175 0.86347 0.83272 1.90715 1.61354 1.16378 1.73285 1.20158 0.81625 0.87262 0.84256 1.90609 1.60348 1.17158 1.72580 1.42104 1.40275 1.15524 1.24941 1.17270 1.08092 0.93868 0.96897 1.24274 1.04100 0.95613 0.98149 1.78157 1.11478 1.08259 1.16043 1.44830 1.25103 1.06004 1.17223 1.20633 1.21609 1.02083 1.04083 0.84203 1.26865 0.99026 0.93758 1.02034 1.70372 1.36171 1.02179 1.36096 0.84597 0.77278 0.78730 0.75656 1.18843 1.20118 1.16873 1.21997 1.07167 0.96958 0.96620 0.90437 0.91262 0.89208 0.82662 0.80869 0.80645 0.82945 0.89559 0.87781 0.92052 0.74110 0.80469 0.91241 0.79691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 8.97 71.98 0.65 -1.07 16 2 C 0.17 2.90 2.98 44.24 0.13 3.03 16 3 H 0.11 2.02 6.74 -2.39 -0.02 2.00 16 4 C -0.06 -1.05 4.97 -19.67 -0.10 -1.15 16 5 C -0.17 -2.68 8.54 22.36 0.19 -2.49 16 6 C 0.09 1.51 11.18 84.68 0.95 2.46 16 7 N -0.51 -10.53 10.36 -195.85 -2.03 -12.56 16 8 C 0.09 1.51 11.18 84.68 0.95 2.45 16 9 C -0.16 -2.61 9.77 22.36 0.22 -2.39 16 10 N -0.57 -12.55 2.75 -828.56 -2.28 -14.83 16 11 C 0.06 1.26 7.06 127.77 0.90 2.16 16 12 C 0.52 14.94 7.72 87.22 0.67 15.61 16 13 O -0.54 -16.53 15.82 -3.30 -0.05 -16.58 16 14 C 0.48 16.75 7.73 87.22 0.67 17.42 16 15 O -0.53 -20.01 10.40 -3.42 -0.04 -20.05 16 16 N -0.58 -21.19 5.45 -305.33 -1.66 -22.85 16 17 C -0.05 -2.49 6.90 37.82 0.26 -2.23 16 18 C -0.05 -2.39 10.84 85.44 0.93 -1.46 16 19 N -0.31 -18.01 10.39 -56.43 -0.59 -18.60 16 20 N -0.16 -8.93 3.73 -189.98 -0.71 -9.64 16 21 C -0.35 -18.40 10.25 84.02 0.86 -17.54 16 22 H 0.14 6.34 7.83 -2.91 -0.02 6.32 16 23 C 0.00 -0.24 5.50 84.96 0.47 0.23 16 24 N -0.82 -46.34 11.81 21.66 0.26 -46.09 16 25 Si 1.02 37.91 29.55 68.60 2.03 39.93 16 26 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 27 H -0.28 -10.18 7.11 99.48 0.71 -9.47 16 28 H -0.25 -8.34 7.11 99.48 0.71 -7.63 16 29 C -0.08 -3.53 11.50 83.41 0.96 -2.57 16 30 H 0.08 0.71 6.30 -2.39 -0.02 0.69 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.16 1.92 4.86 -2.91 -0.01 1.90 16 34 H 0.17 2.17 8.06 -2.91 -0.02 2.15 16 35 H 0.18 2.04 8.06 -2.91 -0.02 2.02 16 36 H 0.15 1.84 8.02 -2.91 -0.02 1.81 16 37 H 0.09 2.09 5.81 -2.39 -0.01 2.08 16 38 H 0.10 1.23 5.19 -2.39 -0.01 1.22 16 39 H 0.06 1.26 7.36 -2.39 -0.02 1.25 16 40 H 0.42 13.00 8.29 -92.71 -0.77 12.23 16 41 H 0.18 8.93 5.92 -2.91 -0.02 8.92 16 42 H 0.28 14.39 8.31 -92.71 -0.77 13.62 16 43 H 0.19 6.85 8.06 -2.91 -0.02 6.83 16 Total: -1.00 -74.00 361.75 3.96 -70.04 By element: Atomic # 1 Polarization: 38.43 SS G_CDS: 0.32 Total: 38.75 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: 8.71 Total: 12.48 kcal Atomic # 7 Polarization: -117.56 SS G_CDS: -7.01 Total: -124.57 kcal Atomic # 8 Polarization: -36.54 SS G_CDS: -0.09 Total: -36.63 kcal Atomic # 14 Polarization: 37.91 SS G_CDS: 2.03 Total: 39.93 kcal Total: -74.00 3.96 -70.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324220690.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.246 kcal (2) G-P(sol) polarization free energy of solvation -73.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds