Wall clock time and date at job start Wed Apr 1 2020 02:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46764 * 124.34860 * 2 1 4 4 C 1.54835 * 105.49318 * 197.05777 * 3 2 1 5 5 C 1.54628 * 101.60543 * 334.56742 * 4 3 2 6 6 H 1.08999 * 110.48302 * 143.56566 * 5 4 3 7 7 N 1.46893 * 110.48617 * 266.08129 * 5 4 3 8 8 C 1.47479 * 111.00130 * 178.15959 * 7 5 4 9 9 C 1.53517 * 87.99753 * 221.26429 * 8 7 5 10 10 O 1.42895 * 114.17317 * 272.40481 * 9 8 7 11 11 C 1.52996 * 114.16834 * 139.69722 * 9 8 7 12 12 N 1.46494 * 109.47237 * 185.00037 * 11 9 8 13 13 C 1.34783 * 120.00239 * 180.02562 * 12 11 9 14 14 O 1.21277 * 120.00082 * 0.02562 * 13 12 11 15 15 C 1.50705 * 119.99882 * 179.97438 * 13 12 11 16 16 S 1.80998 * 109.46764 * 179.97438 * 15 13 12 17 17 C 1.76206 * 99.99814 * 179.97438 * 16 15 13 18 18 H 1.07994 * 120.00110 * 0.02562 * 17 16 15 19 19 C 1.38793 * 119.99810 * 180.02562 * 17 16 15 20 20 N 1.31633 * 120.00297 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99898 * 180.02562 * 19 17 16 22 22 H 1.48491 * 109.47268 * 89.99575 * 21 19 17 23 23 H 1.48498 * 109.47089 * 209.99931 * 21 19 17 24 24 H 1.48502 * 109.46964 * 329.99498 * 21 19 17 25 25 C 1.47486 * 111.00063 * 82.18734 * 7 5 4 26 26 C 1.34422 * 124.35188 * 180.02562 * 2 1 3 27 27 O 1.21283 * 124.94017 * 359.53919 * 26 2 1 28 28 H 1.09000 * 109.47186 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47548 * 299.99934 * 1 2 3 30 30 H 1.08998 * 109.47476 * 60.00522 * 1 2 3 31 31 H 1.09005 * 110.24638 * 316.03372 * 3 2 1 32 32 H 1.08999 * 110.24675 * 77.95141 * 3 2 1 33 33 H 1.08998 * 111.07756 * 216.48798 * 4 3 2 34 34 H 1.09005 * 111.01084 * 92.61953 * 4 3 2 35 35 H 1.09002 * 113.47562 * 336.06376 * 8 7 5 36 36 H 1.09003 * 113.47677 * 106.46979 * 8 7 5 37 37 H 0.96692 * 114.00048 * 179.97438 * 10 9 8 38 38 H 1.08997 * 109.47549 * 305.00387 * 11 9 8 39 39 H 1.09004 * 109.47511 * 65.00372 * 11 9 8 40 40 H 0.97003 * 120.00013 * 0.02562 * 12 11 9 41 41 H 1.08997 * 109.47316 * 300.00345 * 15 13 12 42 42 H 1.08997 * 109.47001 * 60.00400 * 15 13 12 43 43 H 0.96996 * 120.00133 * 180.02562 * 20 19 17 44 44 H 1.09001 * 113.47573 * 253.46865 * 25 7 5 45 45 H 1.08996 * 113.47515 * 23.87978 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7041 0.7484 -0.4377 5 6 3.6898 -0.7378 -0.0109 6 1 4.2328 -1.3473 -0.7333 7 7 4.2692 -0.8933 1.3299 8 6 4.2213 -2.3012 1.7664 9 6 3.8141 -1.7993 3.1590 10 8 4.9159 -1.4926 4.0156 11 6 2.7338 -2.6435 3.8379 12 7 2.3398 -2.0103 5.0988 13 6 1.3957 -2.5808 5.8733 14 8 0.8726 -3.6186 5.5266 15 6 0.9908 -1.9297 7.1707 16 16 -0.2873 -2.9283 7.9738 17 6 -0.5641 -1.9638 9.4223 18 1 -0.0044 -1.0538 9.5801 19 6 -1.5013 -2.3737 10.3603 20 7 -2.1839 -3.4827 10.1677 21 14 -1.7952 -1.3508 11.8955 22 1 -2.8636 -0.3545 11.6295 23 1 -2.2131 -2.2392 13.0097 24 1 -0.5424 -0.6458 12.2679 25 6 3.2721 -0.5937 2.3746 26 6 2.2235 -1.1098 -0.0005 27 8 1.7946 -2.2442 0.0070 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 1.8982 1.9385 -0.7100 32 1 2.3296 1.6436 1.0001 33 1 4.4800 1.2993 0.0938 34 1 3.8296 0.8433 -1.5163 35 1 3.4446 -2.8833 1.2704 36 1 5.1932 -2.7943 1.7497 37 1 4.6567 -1.1764 4.8919 38 1 1.8661 -2.7188 3.1825 39 1 3.1248 -3.6410 4.0389 40 1 2.7584 -1.1805 5.3764 41 1 1.8587 -1.8544 7.8258 42 1 0.5995 -0.9323 6.9701 43 1 -2.8391 -3.7689 10.8231 44 1 3.4399 0.3604 2.8741 45 1 2.2422 -0.7193 2.0405 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325184785.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:34:41 Heat of formation + Delta-G solvation = -56.340739 kcal Electronic energy + Delta-G solvation = -28178.812698 eV Core-core repulsion = 24131.756614 eV Total energy + Delta-G solvation = -4047.056084 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.25525 -39.87253 -38.85323 -36.93282 -36.08562 -34.16143 -32.97043 -32.45190 -30.29101 -28.85436 -27.42442 -26.94241 -26.33431 -25.49534 -24.01278 -21.90412 -20.63267 -20.48515 -19.61665 -18.20055 -17.69544 -17.23286 -17.14223 -16.46860 -16.12524 -15.85090 -15.35949 -15.12977 -15.01823 -14.83479 -14.79498 -14.23310 -14.09700 -13.82645 -13.61861 -13.27155 -13.14926 -13.11299 -12.93525 -12.72040 -12.61861 -12.54608 -12.27615 -11.91903 -11.73803 -11.49160 -11.09706 -11.07239 -11.04899 -10.81989 -10.73805 -10.20674 -9.84476 -9.50625 -9.21136 -9.18686 -9.09820 -9.01163 -8.26803 -6.53103 -6.23884 -3.94998 2.01177 2.51726 2.90711 3.01503 3.20586 3.24608 3.28721 3.31863 3.55499 3.60682 3.79914 3.91349 3.97247 4.17884 4.31880 4.35975 4.44658 4.65876 4.83812 4.87676 4.96860 4.98683 5.06741 5.09214 5.11302 5.17002 5.28257 5.36636 5.37542 5.39968 5.44495 5.53909 5.55308 5.67949 5.77017 5.83280 5.99532 6.07779 6.35313 6.44466 6.57708 7.21986 7.53726 7.57414 7.64377 8.32716 8.51356 9.21325 10.83526 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.017453 B = 0.002293 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.929882 B =12209.021447 C =12686.427121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.621 5.621 3 C 0.097 3.903 4 C -0.121 4.121 5 C 0.011 3.989 6 H 0.119 0.881 7 N -0.429 5.429 8 C 0.004 3.996 9 C 0.098 3.902 10 O -0.521 6.521 11 C 0.107 3.893 12 N -0.740 5.740 13 C 0.533 3.467 14 O -0.511 6.511 15 C -0.153 4.153 16 S -0.059 6.059 17 C -0.536 4.536 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C -0.037 4.037 26 C 0.491 3.509 27 O -0.521 6.521 28 H 0.085 0.915 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.104 0.896 34 H 0.088 0.912 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.378 0.622 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.393 0.607 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.269 0.731 44 H 0.096 0.904 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.427 12.806 -22.634 29.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.356 5.356 3 C -0.026 4.026 4 C -0.159 4.159 5 C -0.101 4.101 6 H 0.137 0.863 7 N -0.151 5.151 8 C -0.125 4.125 9 C 0.055 3.945 10 O -0.327 6.327 11 C -0.018 4.018 12 N -0.396 5.396 13 C 0.319 3.681 14 O -0.384 6.384 15 C -0.304 4.304 16 S 0.167 5.833 17 C -0.684 4.684 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.207 1.207 24 H -0.197 1.197 25 C -0.166 4.166 26 C 0.277 3.723 27 O -0.396 6.396 28 H 0.103 0.897 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.122 0.878 34 H 0.107 0.893 35 H 0.125 0.875 36 H 0.121 0.879 37 H 0.227 0.773 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.227 0.773 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.079 0.921 44 H 0.114 0.886 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 13.063 10.512 -23.750 29.072 hybrid contribution -0.622 2.197 1.845 2.935 sum 12.441 12.709 -21.905 28.216 Atomic orbital electron populations 1.21644 0.77588 1.04210 1.01861 1.48300 1.06828 1.07426 1.73081 1.22252 0.90596 0.87347 1.02371 1.22681 0.96740 0.94015 1.02486 1.23166 0.91606 0.99388 0.95976 0.86330 1.69315 1.34142 1.12668 0.99019 1.24216 1.04673 0.92112 0.91472 1.22421 0.87006 0.94462 0.90578 1.86571 1.30568 1.87655 1.27874 1.21783 0.96883 0.97143 0.85996 1.45913 1.43107 1.28122 1.22493 1.20340 0.78112 0.84709 0.84926 1.90725 1.52637 1.22649 1.72415 1.23531 1.05817 1.04652 0.96380 1.85450 1.43658 1.31871 1.22277 1.22857 1.27020 1.11676 1.06871 0.90908 1.24999 0.94887 0.95374 0.98341 1.70016 1.23316 1.21303 1.35610 0.86160 0.78631 0.79546 0.81115 1.20281 1.20730 1.19677 1.24890 0.96131 1.01118 0.94451 1.21600 0.90163 0.84819 0.75685 1.90764 1.78568 1.20804 1.49472 0.89658 0.91606 0.91819 0.89972 0.90725 0.87796 0.89309 0.87541 0.87916 0.77304 0.90272 0.90114 0.77255 0.89068 0.89217 0.92144 0.88581 0.89688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.63 11.14 59.85 0.67 1.30 16 2 N -0.62 -4.88 2.73 -180.06 -0.49 -5.37 16 3 C 0.10 0.48 6.66 -2.93 -0.02 0.46 16 4 C -0.12 -0.57 6.83 -24.91 -0.17 -0.74 16 5 C 0.01 0.09 3.24 -67.73 -0.22 -0.13 16 6 H 0.12 0.86 8.14 -51.93 -0.42 0.43 16 7 N -0.43 -3.77 6.38 -236.33 -1.51 -5.28 16 8 C 0.00 0.04 7.00 -7.54 -0.05 -0.01 16 9 C 0.10 0.97 1.65 -89.99 -0.15 0.82 16 10 O -0.52 -5.11 13.56 -35.23 -0.48 -5.59 16 11 C 0.11 1.32 5.36 -4.05 -0.02 1.30 16 12 N -0.74 -9.40 5.32 -60.30 -0.32 -9.72 16 13 C 0.53 9.74 7.85 -10.98 -0.09 9.66 16 14 O -0.51 -11.65 15.86 5.56 0.09 -11.57 16 15 C -0.15 -3.00 6.16 36.01 0.22 -2.78 16 16 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 17 C -0.54 -15.11 9.50 30.94 0.29 -14.81 16 18 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 19 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 20 N -0.87 -26.07 13.22 55.49 0.73 -25.34 16 21 Si 0.92 21.22 29.55 -169.99 -5.02 16.20 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 25 C -0.04 -0.33 5.86 -7.44 -0.04 -0.37 16 26 C 0.49 4.98 4.79 -10.86 -0.05 4.92 16 27 O -0.52 -7.29 15.61 5.55 0.09 -7.20 16 28 H 0.08 0.77 7.53 -51.93 -0.39 0.38 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.07 0.35 7.86 -51.93 -0.41 -0.06 16 33 H 0.10 0.45 8.08 -51.93 -0.42 0.03 16 34 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.11 1.19 5.80 -51.93 -0.30 0.89 16 36 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.38 2.62 7.51 45.56 0.34 2.96 16 38 H 0.08 1.11 8.00 -51.93 -0.42 0.70 16 39 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.39 3.60 7.25 -40.82 -0.30 3.31 16 41 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 42 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 43 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.09 0.87 5.11 -51.93 -0.27 0.60 16 LS Contribution 380.34 15.07 5.73 5.73 Total: -1.00 -37.38 380.34 -9.05 -46.43 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -5.93 Total: 3.91 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: 0.27 Total: 1.59 kcal Atomic # 7 Polarization: -44.12 SS G_CDS: -1.59 Total: -45.71 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -0.30 Total: -24.36 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.38 -9.05 -46.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325184785.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.911 kcal (2) G-P(sol) polarization free energy of solvation -37.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds