Wall clock time and date at job start Wed Apr 1 2020 02:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46764 * 124.34860 * 2 1 4 4 C 1.54835 * 105.49318 * 197.05777 * 3 2 1 5 5 C 1.54628 * 101.60543 * 334.56742 * 4 3 2 6 6 H 1.08999 * 110.48302 * 143.56566 * 5 4 3 7 7 N 1.46893 * 110.48617 * 266.08129 * 5 4 3 8 8 C 1.47479 * 111.00130 * 178.15959 * 7 5 4 9 9 C 1.53517 * 87.99753 * 221.26429 * 8 7 5 10 10 O 1.42895 * 114.17317 * 272.40481 * 9 8 7 11 11 C 1.52996 * 114.16834 * 139.69722 * 9 8 7 12 12 N 1.46494 * 109.47237 * 185.00037 * 11 9 8 13 13 C 1.34783 * 120.00239 * 180.02562 * 12 11 9 14 14 O 1.21277 * 120.00082 * 0.02562 * 13 12 11 15 15 C 1.50705 * 119.99882 * 179.97438 * 13 12 11 16 16 S 1.80998 * 109.46764 * 179.97438 * 15 13 12 17 17 C 1.76206 * 99.99814 * 179.97438 * 16 15 13 18 18 H 1.07994 * 120.00110 * 0.02562 * 17 16 15 19 19 C 1.38793 * 119.99810 * 180.02562 * 17 16 15 20 20 N 1.31633 * 120.00297 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99898 * 180.02562 * 19 17 16 22 22 H 1.48491 * 109.47268 * 89.99575 * 21 19 17 23 23 H 1.48498 * 109.47089 * 209.99931 * 21 19 17 24 24 H 1.48502 * 109.46964 * 329.99498 * 21 19 17 25 25 C 1.47486 * 111.00063 * 82.18734 * 7 5 4 26 26 C 1.34422 * 124.35188 * 180.02562 * 2 1 3 27 27 O 1.21283 * 124.94017 * 359.53919 * 26 2 1 28 28 H 1.09000 * 109.47186 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47548 * 299.99934 * 1 2 3 30 30 H 1.08998 * 109.47476 * 60.00522 * 1 2 3 31 31 H 1.09005 * 110.24638 * 316.03372 * 3 2 1 32 32 H 1.08999 * 110.24675 * 77.95141 * 3 2 1 33 33 H 1.08998 * 111.07756 * 216.48798 * 4 3 2 34 34 H 1.09005 * 111.01084 * 92.61953 * 4 3 2 35 35 H 1.09002 * 113.47562 * 336.06376 * 8 7 5 36 36 H 1.09003 * 113.47677 * 106.46979 * 8 7 5 37 37 H 0.96692 * 114.00048 * 179.97438 * 10 9 8 38 38 H 1.08997 * 109.47549 * 305.00387 * 11 9 8 39 39 H 1.09004 * 109.47511 * 65.00372 * 11 9 8 40 40 H 0.97003 * 120.00013 * 0.02562 * 12 11 9 41 41 H 1.08997 * 109.47316 * 300.00345 * 15 13 12 42 42 H 1.08997 * 109.47001 * 60.00400 * 15 13 12 43 43 H 0.96996 * 120.00133 * 180.02562 * 20 19 17 44 44 H 1.09001 * 113.47573 * 253.46865 * 25 7 5 45 45 H 1.08996 * 113.47515 * 23.87978 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7041 0.7484 -0.4377 5 6 3.6898 -0.7378 -0.0109 6 1 4.2328 -1.3473 -0.7333 7 7 4.2692 -0.8933 1.3299 8 6 4.2213 -2.3012 1.7664 9 6 3.8141 -1.7993 3.1590 10 8 4.9159 -1.4926 4.0156 11 6 2.7338 -2.6435 3.8379 12 7 2.3398 -2.0103 5.0988 13 6 1.3957 -2.5808 5.8733 14 8 0.8726 -3.6186 5.5266 15 6 0.9908 -1.9297 7.1707 16 16 -0.2873 -2.9283 7.9738 17 6 -0.5641 -1.9638 9.4223 18 1 -0.0044 -1.0538 9.5801 19 6 -1.5013 -2.3737 10.3603 20 7 -2.1839 -3.4827 10.1677 21 14 -1.7952 -1.3508 11.8955 22 1 -2.8636 -0.3545 11.6295 23 1 -2.2131 -2.2392 13.0097 24 1 -0.5424 -0.6458 12.2679 25 6 3.2721 -0.5937 2.3746 26 6 2.2235 -1.1098 -0.0005 27 8 1.7946 -2.2442 0.0070 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 1.8982 1.9385 -0.7100 32 1 2.3296 1.6436 1.0001 33 1 4.4800 1.2993 0.0938 34 1 3.8296 0.8433 -1.5163 35 1 3.4446 -2.8833 1.2704 36 1 5.1932 -2.7943 1.7497 37 1 4.6567 -1.1764 4.8919 38 1 1.8661 -2.7188 3.1825 39 1 3.1248 -3.6410 4.0389 40 1 2.7584 -1.1805 5.3764 41 1 1.8587 -1.8544 7.8258 42 1 0.5995 -0.9323 6.9701 43 1 -2.8391 -3.7689 10.8231 44 1 3.4399 0.3604 2.8741 45 1 2.2422 -0.7193 2.0405 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325184785.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:34:40 Heat of formation + Delta-G solvation = -89.671059 kcal Electronic energy + Delta-G solvation = -28180.258009 eV Core-core repulsion = 24131.756614 eV Total energy + Delta-G solvation = -4048.501395 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.96728 -40.92174 -40.02768 -37.69239 -36.90994 -35.39173 -34.58453 -33.58877 -31.60865 -29.77962 -28.12730 -27.82418 -27.56561 -27.07178 -24.81751 -22.46184 -21.97652 -21.34850 -20.31374 -19.97005 -18.54118 -18.35081 -17.85904 -17.71621 -16.93786 -16.91908 -16.87746 -16.61393 -15.99382 -15.93912 -15.74106 -15.39651 -15.04822 -14.88113 -14.64415 -14.40479 -14.34409 -14.10593 -13.86063 -13.58265 -13.45813 -13.32421 -13.21943 -13.16973 -12.91379 -12.88861 -12.62738 -12.30948 -12.02971 -11.87002 -11.72151 -11.57404 -11.14398 -11.05131 -10.99992 -10.32716 -10.27912 -9.92483 -9.81027 -8.67973 -8.34743 -6.13368 1.23727 1.27910 1.42992 1.45822 1.52957 1.56537 1.94319 2.09500 2.27158 2.58904 2.85173 2.99700 3.06485 3.19456 3.29963 3.41855 3.55070 3.76224 3.90509 3.93304 4.03186 4.19853 4.23498 4.28723 4.32045 4.39496 4.49034 4.50472 4.53745 4.58197 4.62694 4.67707 4.77426 4.79713 4.92192 5.06162 5.09010 5.19241 5.42037 5.43641 5.68350 5.95535 6.19829 6.32735 6.58221 6.94174 7.06605 7.13671 8.74500 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.017453 B = 0.002293 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.929882 B =12209.021447 C =12686.427121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.619 5.619 3 C 0.093 3.907 4 C -0.110 4.110 5 C 0.009 3.991 6 H 0.121 0.879 7 N -0.421 5.421 8 C 0.000 4.000 9 C 0.108 3.892 10 O -0.525 6.525 11 C 0.113 3.887 12 N -0.709 5.709 13 C 0.535 3.465 14 O -0.564 6.564 15 C -0.127 4.127 16 S -0.156 6.156 17 C -0.544 4.544 18 H 0.086 0.914 19 C 0.012 3.988 20 N -0.913 5.913 21 Si 1.000 3.000 22 H -0.268 1.268 23 H -0.280 1.280 24 H -0.256 1.256 25 C -0.028 4.028 26 C 0.481 3.519 27 O -0.573 6.573 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.107 0.893 32 H 0.082 0.918 33 H 0.116 0.884 34 H 0.107 0.893 35 H 0.090 0.910 36 H 0.106 0.894 37 H 0.392 0.608 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.416 0.584 41 H 0.116 0.884 42 H 0.114 0.886 43 H 0.271 0.729 44 H 0.117 0.883 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.291 16.730 -22.595 32.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.353 5.353 3 C -0.029 4.029 4 C -0.147 4.147 5 C -0.103 4.103 6 H 0.139 0.861 7 N -0.143 5.143 8 C -0.129 4.129 9 C 0.065 3.935 10 O -0.333 6.333 11 C -0.012 4.012 12 N -0.365 5.365 13 C 0.322 3.678 14 O -0.442 6.442 15 C -0.278 4.278 16 S 0.071 5.929 17 C -0.691 4.691 18 H 0.104 0.896 19 C -0.193 4.193 20 N -0.549 5.549 21 Si 0.821 3.179 22 H -0.193 1.193 23 H -0.205 1.205 24 H -0.180 1.180 25 C -0.157 4.157 26 C 0.268 3.732 27 O -0.453 6.453 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.106 0.894 31 H 0.125 0.875 32 H 0.101 0.899 33 H 0.134 0.866 34 H 0.126 0.874 35 H 0.107 0.893 36 H 0.124 0.876 37 H 0.242 0.758 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.254 0.746 41 H 0.134 0.866 42 H 0.132 0.868 43 H 0.080 0.920 44 H 0.135 0.865 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 14.978 14.534 -23.725 31.598 hybrid contribution -1.131 1.010 1.715 2.289 sum 13.847 15.544 -22.010 30.295 Atomic orbital electron populations 1.21700 0.77534 1.02929 1.03468 1.48491 1.07228 1.07997 1.71551 1.22521 0.90264 0.86427 1.03676 1.22736 0.96868 0.91304 1.03829 1.23273 0.89829 1.01792 0.95400 0.86135 1.69331 1.33978 1.11390 0.99643 1.24171 1.04236 0.92955 0.91555 1.22223 0.86264 0.94693 0.90277 1.86568 1.30252 1.87684 1.28763 1.21742 0.96995 0.97325 0.85178 1.45521 1.41087 1.28267 1.21619 1.20170 0.78655 0.84069 0.84944 1.90719 1.54878 1.25042 1.73511 1.23356 1.03942 1.03915 0.96606 1.85689 1.47696 1.35471 1.24052 1.23199 1.27237 1.11864 1.06837 0.89617 1.26155 0.94417 0.96586 1.02144 1.70191 1.24220 1.23459 1.37069 0.84935 0.79156 0.77659 0.76118 1.19303 1.20506 1.17983 1.24802 0.95398 1.01339 0.94168 1.22069 0.91468 0.84528 0.75137 1.90732 1.79586 1.22923 1.52011 0.92406 0.90688 0.89449 0.87461 0.89938 0.86615 0.87418 0.89250 0.87596 0.75750 0.92258 0.91426 0.74599 0.86586 0.86766 0.92036 0.86482 0.91078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.17 11.14 127.77 1.42 2.59 16 2 N -0.62 -8.96 2.73 -842.18 -2.30 -11.26 16 3 C 0.09 0.62 6.66 86.96 0.58 1.20 16 4 C -0.11 -0.67 6.83 31.77 0.22 -0.46 16 5 C 0.01 0.13 3.24 44.91 0.15 0.28 16 6 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 7 N -0.42 -6.67 6.38 -901.95 -5.75 -12.42 16 8 C 0.00 0.00 7.00 83.58 0.59 0.58 16 9 C 0.11 2.01 1.65 -10.38 -0.02 1.99 16 10 O -0.53 -8.95 13.56 -148.98 -2.02 -10.97 16 11 C 0.11 2.78 5.36 86.38 0.46 3.24 16 12 N -0.71 -17.02 5.32 -463.07 -2.46 -19.48 16 13 C 0.54 19.40 7.85 87.66 0.69 20.08 16 14 O -0.56 -26.61 15.86 -3.02 -0.05 -26.66 16 15 C -0.13 -4.82 6.16 71.24 0.44 -4.38 16 16 S -0.16 -8.60 20.57 -56.49 -1.16 -9.77 16 17 C -0.54 -30.54 9.50 67.95 0.65 -29.90 16 18 H 0.09 4.41 7.80 -2.91 -0.02 4.39 16 19 C 0.01 0.65 5.49 84.86 0.47 1.12 16 20 N -0.91 -56.05 13.22 21.65 0.29 -55.77 16 21 Si 1.00 43.05 29.55 68.60 2.03 45.07 16 22 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 23 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 24 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 25 C -0.03 -0.44 5.86 83.64 0.49 0.05 16 26 C 0.48 9.71 4.79 87.90 0.42 10.14 16 27 O -0.57 -17.09 15.61 -3.04 -0.05 -17.14 16 28 H 0.06 1.12 7.53 -2.39 -0.02 1.10 16 29 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.11 0.24 8.14 -2.38 -0.02 0.22 16 32 H 0.08 0.47 7.86 -2.39 -0.02 0.45 16 33 H 0.12 0.52 8.08 -2.39 -0.02 0.50 16 34 H 0.11 0.30 8.14 -2.38 -0.02 0.28 16 35 H 0.09 2.12 5.80 -2.39 -0.01 2.10 16 36 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.39 4.11 7.51 -74.06 -0.56 3.55 16 38 H 0.06 1.75 8.00 -2.39 -0.02 1.73 16 39 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.42 6.34 7.25 -92.71 -0.67 5.66 16 41 H 0.12 3.85 8.14 -2.40 -0.02 3.83 16 42 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 43 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 44 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.07 1.38 5.11 -2.39 -0.01 1.37 16 Total: -1.00 -85.68 380.34 -5.13 -90.81 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: -0.20 Total: 21.04 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: 6.55 Total: 6.54 kcal Atomic # 7 Polarization: -88.70 SS G_CDS: -10.23 Total: -98.93 kcal Atomic # 8 Polarization: -52.66 SS G_CDS: -2.11 Total: -54.77 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.16 Total: -9.77 kcal Total: -85.68 -5.13 -90.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325184785.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.137 kcal (2) G-P(sol) polarization free energy of solvation -85.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds