Wall clock time and date at job start Wed Apr 1 2020 01:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46823 * 2 1 4 4 C 1.50695 * 109.47614 * 120.00523 * 2 1 3 5 5 H 1.08003 * 120.00015 * 114.43501 * 4 2 1 6 6 C 1.37877 * 120.00205 * 294.44053 * 4 2 1 7 7 N 1.31512 * 119.99889 * 158.78725 * 6 4 2 8 8 Si 1.86803 * 119.99762 * 339.06098 * 6 4 2 9 9 H 1.48493 * 109.46999 * 179.72628 * 8 6 4 10 10 H 1.48502 * 109.47016 * 299.72246 * 8 6 4 11 11 H 1.48494 * 109.47204 * 59.72481 * 8 6 4 12 12 N 1.46507 * 109.46908 * 240.01094 * 2 1 3 13 13 C 1.34770 * 120.00131 * 84.99440 * 12 2 1 14 14 O 1.21362 * 120.00282 * 0.02562 * 13 12 2 15 15 C 1.49330 * 119.99851 * 179.97438 * 13 12 2 16 16 O 1.21386 * 120.00164 * 0.02562 * 15 13 12 17 17 N 1.34781 * 120.00172 * 179.97438 * 15 13 12 18 18 C 1.39629 * 120.00124 * 184.93721 * 17 15 13 19 19 C 1.39088 * 120.53540 * 332.53078 * 18 17 15 20 20 C 1.38646 * 118.44581 * 179.73722 * 19 18 17 21 21 C 1.38271 * 119.44958 * 0.51439 * 20 19 18 22 22 N 1.31803 * 121.06012 * 359.75401 * 21 20 19 23 23 C 1.32612 * 121.68232 * 359.97438 * 22 21 20 24 24 C 1.48278 * 119.78216 * 180.02562 * 23 22 21 25 25 C 1.40927 * 126.24604 * 144.66705 * 24 23 22 26 26 N 1.30644 * 108.08227 * 179.81343 * 25 24 23 27 27 N 1.40005 * 108.55273 * 0.44287 * 26 25 24 28 28 C 1.46505 * 125.87515 * 179.69424 * 27 26 25 29 29 C 1.34748 * 108.24966 * 359.71531 * 27 26 25 30 30 H 1.08992 * 109.47461 * 53.23398 * 1 2 3 31 31 H 1.08999 * 109.46831 * 173.23839 * 1 2 3 32 32 H 1.09001 * 109.46670 * 293.22620 * 1 2 3 33 33 H 0.96998 * 119.99874 * 355.19639 * 7 6 4 34 34 H 0.97001 * 119.99397 * 264.99627 * 12 2 1 35 35 H 0.96993 * 119.99662 * 4.93911 * 17 15 13 36 36 H 1.07998 * 120.77693 * 0.02562 * 19 18 17 37 37 H 1.07997 * 120.27513 * 180.24542 * 20 19 18 38 38 H 1.08006 * 119.46660 * 179.76428 * 21 20 19 39 39 H 1.08004 * 125.95438 * 359.97438 * 25 24 23 40 40 H 1.08998 * 109.46548 * 270.02763 * 28 27 26 41 41 H 1.08997 * 109.46988 * 30.02211 * 28 27 26 42 42 H 1.08993 * 109.47073 * 150.02524 * 28 27 26 43 43 H 1.08004 * 126.20281 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.5773 -1.6380 1.1336 6 6 1.7965 -0.1765 2.4794 7 7 1.8440 -0.9476 3.5438 8 14 1.4020 1.6405 2.6591 9 1 1.1851 1.9604 4.0929 10 1 2.5349 2.4469 2.1379 11 1 0.1726 1.9585 1.8894 12 7 2.0183 -0.6904 -1.1964 13 6 2.1469 -0.0179 -2.3572 14 8 1.8586 1.1597 -2.4115 15 6 2.6452 -0.7216 -3.5764 16 8 2.9339 -1.8993 -3.5221 17 7 2.7733 -0.0492 -4.7375 18 6 3.1400 -0.7287 -5.9010 19 6 3.9027 -1.8896 -5.8307 20 6 4.2376 -2.5324 -7.0126 21 6 3.8174 -2.0011 -8.2180 22 7 3.0998 -0.8963 -8.2610 23 6 2.7505 -0.2494 -7.1574 24 6 1.9418 0.9897 -7.2547 25 6 0.9445 1.4070 -6.3507 26 7 0.4649 2.5462 -6.7736 27 7 1.1233 2.8942 -7.9592 28 6 0.8756 4.0974 -8.7575 29 6 2.0236 1.9318 -8.2399 30 1 -0.3634 0.6150 -0.8232 31 1 -0.3633 -1.0205 -0.1210 32 1 -0.3633 0.4053 0.9444 33 1 1.9757 -1.9034 3.4447 34 1 2.2490 -1.6316 -1.1529 35 1 2.6108 0.9066 -4.7649 36 1 4.2227 -2.2837 -4.8775 37 1 4.8254 -3.4381 -6.9922 38 1 4.0813 -2.4995 -9.1392 39 1 0.6330 0.8784 -5.4618 40 1 0.1035 3.8893 -9.4982 41 1 0.5443 4.9048 -8.1045 42 1 1.7944 4.3932 -9.2636 43 1 2.6897 1.9097 -9.0898 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326127317.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:34 Heat of formation + Delta-G solvation = 57.461770 kcal Electronic energy + Delta-G solvation = -29110.917808 eV Core-core repulsion = 24965.645371 eV Total energy + Delta-G solvation = -4145.272437 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.74783 -40.89306 -39.70786 -38.27040 -35.77760 -34.97318 -33.80939 -32.54662 -32.52380 -31.02084 -29.90354 -29.36202 -27.14356 -25.46496 -24.83200 -23.85635 -22.89202 -21.31633 -20.89457 -20.68964 -19.78088 -18.94331 -17.80972 -17.57467 -17.19254 -16.41756 -16.12439 -16.02388 -15.74124 -15.41399 -15.07165 -14.79530 -14.29367 -14.09072 -13.92291 -13.62760 -13.39630 -13.26370 -13.19028 -13.00647 -12.88013 -12.77079 -12.39589 -12.29857 -11.81461 -11.50516 -11.33686 -11.17848 -11.02969 -10.56674 -10.16188 -10.02070 -9.92973 -9.85561 -9.75541 -9.23612 -9.20512 -8.98246 -8.46884 -8.39145 -8.06550 -6.65674 -4.28677 0.64292 1.04166 1.64005 1.70886 2.16390 2.42097 2.52979 3.35373 3.41320 3.42050 3.56376 3.71464 3.85670 4.04155 4.26534 4.38542 4.52714 4.64333 4.70464 4.76993 4.85252 4.89305 4.95844 5.03941 5.06676 5.15291 5.27926 5.40456 5.65307 5.81294 6.01253 6.06823 6.23655 6.26556 6.42319 6.53658 6.57089 6.61992 6.78610 6.87250 7.08833 7.20536 7.36089 7.46678 7.66022 7.78713 8.14928 8.21903 8.42989 8.72798 9.38495 10.73683 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.012999 B = 0.002928 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.486422 B = 9561.729486 C =11422.124578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.241 3.759 3 H 0.046 0.954 4 C -0.626 4.626 5 H 0.066 0.934 6 C 0.046 3.954 7 N -0.889 5.889 8 Si 1.034 2.966 9 H -0.282 1.282 10 H -0.280 1.280 11 H -0.272 1.272 12 N -0.660 5.660 13 C 0.495 3.505 14 O -0.532 6.532 15 C 0.508 3.492 16 O -0.501 6.501 17 N -0.641 5.641 18 C 0.106 3.894 19 C -0.085 4.085 20 C -0.159 4.159 21 C 0.082 3.918 22 N -0.466 5.466 23 C 0.191 3.809 24 C -0.208 4.208 25 C 0.068 3.932 26 N -0.284 5.284 27 N -0.373 5.373 28 C 0.100 3.900 29 C 0.103 3.897 30 H 0.032 0.968 31 H 0.047 0.953 32 H 0.065 0.935 33 H 0.272 0.728 34 H 0.407 0.593 35 H 0.425 0.575 36 H 0.163 0.837 37 H 0.138 0.862 38 H 0.157 0.843 39 H 0.186 0.814 40 H 0.077 0.923 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.547 3.949 -26.961 27.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.138 3.862 3 H 0.064 0.936 4 C -0.664 4.664 5 H 0.084 0.916 6 C -0.162 4.162 7 N -0.520 5.520 8 Si 0.861 3.139 9 H -0.207 1.207 10 H -0.206 1.206 11 H -0.198 1.198 12 N -0.309 5.309 13 C 0.273 3.727 14 O -0.411 6.411 15 C 0.291 3.709 16 O -0.375 6.375 17 N -0.288 5.288 18 C 0.008 3.992 19 C -0.112 4.112 20 C -0.180 4.180 21 C -0.076 4.076 22 N -0.174 5.174 23 C 0.050 3.950 24 C -0.221 4.221 25 C -0.120 4.120 26 N -0.104 5.104 27 N -0.153 5.153 28 C -0.041 4.041 29 C -0.046 4.046 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.242 0.758 35 H 0.265 0.735 36 H 0.180 0.820 37 H 0.156 0.844 38 H 0.174 0.826 39 H 0.203 0.797 40 H 0.096 0.904 41 H 0.111 0.889 42 H 0.108 0.892 43 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 1.070 6.565 -26.369 27.195 hybrid contribution 1.238 -2.390 -0.559 2.749 sum 2.308 4.175 -26.928 27.347 Atomic orbital electron populations 1.22476 0.98231 1.00453 1.00681 1.19230 0.90998 0.94308 0.81625 0.93582 1.22015 1.42186 1.11489 0.90680 0.91626 1.25654 0.93139 1.05844 0.91548 1.70857 1.42807 1.06927 1.31429 0.84192 0.77770 0.75482 0.76490 1.20713 1.20557 1.19759 1.46253 1.61231 1.14705 1.08672 1.19669 0.81207 0.87321 0.84504 1.90750 1.50694 1.15036 1.84624 1.20950 0.78175 0.87028 0.84769 1.90678 1.46723 1.15682 1.84418 1.43275 1.66111 1.13312 1.06132 1.18663 0.98431 0.95812 0.86263 1.22026 0.94346 0.93893 1.00978 1.22104 1.01738 1.01463 0.92654 1.22631 0.94902 0.92111 0.97947 1.67679 1.11936 1.08199 1.29620 1.18650 0.95689 0.93747 0.86922 1.18419 1.05536 0.97723 1.00375 1.24084 0.94884 0.93350 0.99729 1.77385 1.19650 1.15923 0.97415 1.48493 1.28844 1.18614 1.19369 1.21932 1.03114 0.84374 0.94715 1.22586 0.94086 0.88754 0.99207 0.94905 0.93406 0.91669 0.91806 0.75793 0.73461 0.81998 0.84403 0.82560 0.79709 0.90435 0.88908 0.89239 0.80077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.50 9.18 37.16 0.34 -3.16 16 2 C 0.24 5.64 2.15 -69.08 -0.15 5.49 16 3 H 0.05 1.14 6.18 -51.93 -0.32 0.82 16 4 C -0.63 -16.64 8.97 -34.44 -0.31 -16.95 16 5 H 0.07 1.84 7.96 -52.48 -0.42 1.42 16 6 C 0.05 1.27 5.23 -17.82 -0.09 1.18 16 7 N -0.89 -25.94 13.70 55.43 0.76 -25.19 16 8 Si 1.03 24.30 26.38 -169.99 -4.48 19.82 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.27 -5.96 5.98 56.52 0.34 -5.62 16 12 N -0.66 -13.41 5.06 -55.40 -0.28 -13.69 16 13 C 0.49 9.26 7.85 -11.64 -0.09 9.17 16 14 O -0.53 -10.85 16.14 5.49 0.09 -10.77 16 15 C 0.51 8.12 7.77 -11.64 -0.09 8.03 16 16 O -0.50 -8.41 13.52 5.47 0.07 -8.34 16 17 N -0.64 -8.78 4.21 -10.03 -0.04 -8.82 16 18 C 0.11 1.38 6.42 -83.33 -0.53 0.85 16 19 C -0.08 -1.05 8.88 -39.12 -0.35 -1.39 16 20 C -0.16 -1.54 10.10 -39.42 -0.40 -1.94 16 21 C 0.08 0.78 11.17 -17.55 -0.20 0.59 16 22 N -0.47 -5.38 10.23 -9.63 -0.10 -5.48 16 23 C 0.19 2.35 6.69 -82.74 -0.55 1.80 16 24 C -0.21 -2.45 5.55 -105.36 -0.58 -3.03 16 25 C 0.07 0.86 10.04 -17.04 -0.17 0.69 16 26 N -0.28 -3.68 12.54 30.82 0.39 -3.29 16 27 N -0.37 -3.63 4.00 -67.88 -0.27 -3.90 16 28 C 0.10 0.50 11.46 59.85 0.69 1.19 16 29 C 0.10 0.98 11.38 -16.88 -0.19 0.79 16 30 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.06 1.46 5.24 -51.93 -0.27 1.19 16 33 H 0.27 7.87 8.73 -40.82 -0.36 7.51 16 34 H 0.41 7.86 7.99 -40.82 -0.33 7.53 16 35 H 0.43 5.63 6.08 -40.82 -0.25 5.39 16 36 H 0.16 2.15 5.74 -52.49 -0.30 1.85 16 37 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.16 0.98 8.06 -52.48 -0.42 0.56 16 39 H 0.19 2.34 7.19 -52.48 -0.38 1.97 16 40 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 43 H 0.18 1.20 8.06 -52.48 -0.42 0.78 16 LS Contribution 368.79 15.07 5.56 5.56 Total: -1.00 -32.72 368.79 -5.86 -38.58 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -4.86 Total: 12.24 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: -2.68 Total: 3.29 kcal Atomic # 7 Polarization: -60.83 SS G_CDS: 0.45 Total: -60.38 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: 0.16 Total: -19.11 kcal Atomic # 14 Polarization: 24.30 SS G_CDS: -4.48 Total: 19.82 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.72 -5.86 -38.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326127317.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.043 kcal (2) G-P(sol) polarization free energy of solvation -32.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds