Wall clock time and date at job start Wed Apr 1 2020 01:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46823 * 2 1 4 4 C 1.50695 * 109.47614 * 120.00523 * 2 1 3 5 5 H 1.08003 * 120.00015 * 114.43501 * 4 2 1 6 6 C 1.37877 * 120.00205 * 294.44053 * 4 2 1 7 7 N 1.31512 * 119.99889 * 158.78725 * 6 4 2 8 8 Si 1.86803 * 119.99762 * 339.06098 * 6 4 2 9 9 H 1.48493 * 109.46999 * 179.72628 * 8 6 4 10 10 H 1.48502 * 109.47016 * 299.72246 * 8 6 4 11 11 H 1.48494 * 109.47204 * 59.72481 * 8 6 4 12 12 N 1.46507 * 109.46908 * 240.01094 * 2 1 3 13 13 C 1.34770 * 120.00131 * 84.99440 * 12 2 1 14 14 O 1.21362 * 120.00282 * 0.02562 * 13 12 2 15 15 C 1.49330 * 119.99851 * 179.97438 * 13 12 2 16 16 O 1.21386 * 120.00164 * 0.02562 * 15 13 12 17 17 N 1.34781 * 120.00172 * 179.97438 * 15 13 12 18 18 C 1.39629 * 120.00124 * 184.93721 * 17 15 13 19 19 C 1.39088 * 120.53540 * 332.53078 * 18 17 15 20 20 C 1.38646 * 118.44581 * 179.73722 * 19 18 17 21 21 C 1.38271 * 119.44958 * 0.51439 * 20 19 18 22 22 N 1.31803 * 121.06012 * 359.75401 * 21 20 19 23 23 C 1.32612 * 121.68232 * 359.97438 * 22 21 20 24 24 C 1.48278 * 119.78216 * 180.02562 * 23 22 21 25 25 C 1.40927 * 126.24604 * 144.66705 * 24 23 22 26 26 N 1.30644 * 108.08227 * 179.81343 * 25 24 23 27 27 N 1.40005 * 108.55273 * 0.44287 * 26 25 24 28 28 C 1.46505 * 125.87515 * 179.69424 * 27 26 25 29 29 C 1.34748 * 108.24966 * 359.71531 * 27 26 25 30 30 H 1.08992 * 109.47461 * 53.23398 * 1 2 3 31 31 H 1.08999 * 109.46831 * 173.23839 * 1 2 3 32 32 H 1.09001 * 109.46670 * 293.22620 * 1 2 3 33 33 H 0.96998 * 119.99874 * 355.19639 * 7 6 4 34 34 H 0.97001 * 119.99397 * 264.99627 * 12 2 1 35 35 H 0.96993 * 119.99662 * 4.93911 * 17 15 13 36 36 H 1.07998 * 120.77693 * 0.02562 * 19 18 17 37 37 H 1.07997 * 120.27513 * 180.24542 * 20 19 18 38 38 H 1.08006 * 119.46660 * 179.76428 * 21 20 19 39 39 H 1.08004 * 125.95438 * 359.97438 * 25 24 23 40 40 H 1.08998 * 109.46548 * 270.02763 * 28 27 26 41 41 H 1.08997 * 109.46988 * 30.02211 * 28 27 26 42 42 H 1.08993 * 109.47073 * 150.02524 * 28 27 26 43 43 H 1.08004 * 126.20281 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.5773 -1.6380 1.1336 6 6 1.7965 -0.1765 2.4794 7 7 1.8440 -0.9476 3.5438 8 14 1.4020 1.6405 2.6591 9 1 1.1851 1.9604 4.0929 10 1 2.5349 2.4469 2.1379 11 1 0.1726 1.9585 1.8894 12 7 2.0183 -0.6904 -1.1964 13 6 2.1469 -0.0179 -2.3572 14 8 1.8586 1.1597 -2.4115 15 6 2.6452 -0.7216 -3.5764 16 8 2.9339 -1.8993 -3.5221 17 7 2.7733 -0.0492 -4.7375 18 6 3.1400 -0.7287 -5.9010 19 6 3.9027 -1.8896 -5.8307 20 6 4.2376 -2.5324 -7.0126 21 6 3.8174 -2.0011 -8.2180 22 7 3.0998 -0.8963 -8.2610 23 6 2.7505 -0.2494 -7.1574 24 6 1.9418 0.9897 -7.2547 25 6 0.9445 1.4070 -6.3507 26 7 0.4649 2.5462 -6.7736 27 7 1.1233 2.8942 -7.9592 28 6 0.8756 4.0974 -8.7575 29 6 2.0236 1.9318 -8.2399 30 1 -0.3634 0.6150 -0.8232 31 1 -0.3633 -1.0205 -0.1210 32 1 -0.3633 0.4053 0.9444 33 1 1.9757 -1.9034 3.4447 34 1 2.2490 -1.6316 -1.1529 35 1 2.6108 0.9066 -4.7649 36 1 4.2227 -2.2837 -4.8775 37 1 4.8254 -3.4381 -6.9922 38 1 4.0813 -2.4995 -9.1392 39 1 0.6330 0.8784 -5.4618 40 1 0.1035 3.8893 -9.4982 41 1 0.5443 4.9048 -8.1045 42 1 1.7944 4.3932 -9.2636 43 1 2.6897 1.9097 -9.0898 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326127317.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:33 Heat of formation + Delta-G solvation = 33.184256 kcal Electronic energy + Delta-G solvation = -29111.970560 eV Core-core repulsion = 24965.645371 eV Total energy + Delta-G solvation = -4146.325189 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.66616 -41.97556 -40.83716 -39.63658 -37.24719 -36.38930 -34.60155 -34.45358 -33.35300 -31.99863 -31.64550 -30.19338 -27.78314 -27.04786 -26.50956 -24.73305 -24.01898 -22.29920 -22.14315 -21.65647 -21.36393 -20.38731 -19.33010 -18.49985 -18.48897 -17.66282 -17.36527 -16.88994 -16.82652 -16.44194 -16.40055 -15.65619 -15.61119 -15.29470 -15.11575 -14.89493 -14.71882 -14.67302 -14.30368 -14.19348 -13.91410 -13.61770 -13.59023 -13.49174 -13.37035 -13.13661 -12.68599 -12.44808 -12.21222 -12.01137 -11.86856 -11.71670 -11.22412 -11.04757 -10.81856 -10.53895 -10.51700 -10.41211 -10.18460 -9.90536 -8.93840 -8.84213 -6.47220 -0.30623 0.10602 0.49020 0.83842 1.17598 1.48459 1.51828 1.53635 1.62542 1.72062 2.01158 2.43333 2.54171 2.85894 2.94833 3.21738 3.31641 3.54885 3.82944 3.90499 3.97329 4.14490 4.19248 4.26461 4.41857 4.44984 4.58360 4.65869 4.67071 4.69109 4.72530 4.82561 4.89475 4.98859 5.11068 5.22003 5.28557 5.36442 5.40981 5.52878 5.70085 5.83788 5.97787 5.98545 6.32650 6.46165 6.53580 6.59210 6.90993 6.95130 7.27125 8.54536 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.012999 B = 0.002928 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.486422 B = 9561.729486 C =11422.124578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.244 3.756 3 H 0.038 0.962 4 C -0.625 4.625 5 H 0.040 0.960 6 C 0.003 3.997 7 N -0.919 5.919 8 Si 1.067 2.933 9 H -0.282 1.282 10 H -0.270 1.270 11 H -0.246 1.246 12 N -0.667 5.667 13 C 0.498 3.502 14 O -0.547 6.547 15 C 0.516 3.484 16 O -0.512 6.512 17 N -0.625 5.625 18 C 0.079 3.921 19 C -0.098 4.098 20 C -0.153 4.153 21 C 0.091 3.909 22 N -0.475 5.475 23 C 0.191 3.809 24 C -0.230 4.230 25 C 0.055 3.945 26 N -0.319 5.319 27 N -0.368 5.368 28 C 0.088 3.912 29 C 0.118 3.882 30 H 0.046 0.954 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.260 0.740 34 H 0.410 0.590 35 H 0.426 0.574 36 H 0.149 0.851 37 H 0.168 0.832 38 H 0.195 0.805 39 H 0.174 0.826 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.122 0.878 43 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.943 4.861 -30.479 31.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.140 3.860 3 H 0.056 0.944 4 C -0.663 4.663 5 H 0.058 0.942 6 C -0.199 4.199 7 N -0.552 5.552 8 Si 0.889 3.111 9 H -0.207 1.207 10 H -0.195 1.195 11 H -0.170 1.170 12 N -0.316 5.316 13 C 0.278 3.722 14 O -0.427 6.427 15 C 0.298 3.702 16 O -0.387 6.387 17 N -0.272 5.272 18 C -0.018 4.018 19 C -0.125 4.125 20 C -0.173 4.173 21 C -0.067 4.067 22 N -0.184 5.184 23 C 0.051 3.949 24 C -0.243 4.243 25 C -0.132 4.132 26 N -0.140 5.140 27 N -0.148 5.148 28 C -0.051 4.051 29 C -0.033 4.033 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.246 0.754 35 H 0.267 0.733 36 H 0.166 0.834 37 H 0.186 0.814 38 H 0.212 0.788 39 H 0.191 0.809 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.140 0.860 43 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 1.461 7.487 -29.944 30.900 hybrid contribution 1.190 -2.715 0.321 2.982 sum 2.651 4.772 -29.623 30.122 Atomic orbital electron populations 1.22368 0.96842 1.01065 1.00975 1.18980 0.91949 0.93467 0.81567 0.94448 1.22159 1.41294 1.10555 0.92275 0.94182 1.26850 0.92691 1.08909 0.91474 1.70959 1.45423 1.06465 1.32378 0.83765 0.79093 0.71392 0.76884 1.20710 1.19536 1.16990 1.46064 1.62028 1.14864 1.08629 1.20021 0.80286 0.87049 0.84845 1.90733 1.51090 1.15796 1.85044 1.20254 0.78663 0.86678 0.84556 1.90685 1.47646 1.15870 1.84528 1.43073 1.65151 1.13232 1.05765 1.18819 1.00186 0.96713 0.86038 1.22072 0.94799 0.94043 1.01617 1.22429 1.01216 1.02004 0.91648 1.23304 0.92983 0.91101 0.99325 1.67765 1.12589 1.09030 1.29030 1.18710 0.95507 0.93947 0.86748 1.18530 1.06004 0.98536 1.01219 1.23989 0.95675 0.93656 0.99919 1.77299 1.21056 1.16298 0.99329 1.48865 1.27936 1.19511 1.18480 1.22351 1.05428 0.82714 0.94571 1.23044 0.93507 0.87636 0.99068 0.93460 0.92989 0.92138 0.93052 0.75392 0.73313 0.83382 0.81408 0.78780 0.80854 0.88953 0.89011 0.85965 0.76866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.63 9.18 71.98 0.66 -5.97 16 2 C 0.24 11.43 2.15 44.24 0.10 11.52 16 3 H 0.04 1.84 6.18 -2.39 -0.01 1.82 16 4 C -0.63 -33.87 8.97 25.60 0.23 -33.64 16 5 H 0.04 2.33 7.96 -2.91 -0.02 2.30 16 6 C 0.00 0.16 5.23 84.65 0.44 0.60 16 7 N -0.92 -54.90 13.70 21.45 0.29 -54.61 16 8 Si 1.07 48.66 26.38 68.60 1.81 50.47 16 9 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 10 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 11 H -0.25 -10.12 5.98 99.48 0.60 -9.52 16 12 N -0.67 -27.41 5.06 -447.56 -2.27 -29.68 16 13 C 0.50 18.81 7.85 87.23 0.68 19.50 16 14 O -0.55 -22.34 16.14 -3.28 -0.05 -22.40 16 15 C 0.52 16.71 7.77 87.23 0.68 17.39 16 16 O -0.51 -17.40 13.52 -3.36 -0.05 -17.45 16 17 N -0.63 -17.28 4.21 -303.98 -1.28 -18.56 16 18 C 0.08 2.03 6.42 38.53 0.25 2.27 16 19 C -0.10 -2.32 8.88 22.57 0.20 -2.12 16 20 C -0.15 -2.55 10.10 22.38 0.23 -2.32 16 21 C 0.09 1.41 11.17 84.70 0.95 2.36 16 22 N -0.48 -9.74 10.23 -184.38 -1.89 -11.63 16 23 C 0.19 4.46 6.69 42.13 0.28 4.74 16 24 C -0.23 -5.19 5.55 -20.34 -0.11 -5.30 16 25 C 0.05 1.40 10.04 85.53 0.86 2.26 16 26 N -0.32 -8.15 12.54 -56.41 -0.71 -8.86 16 27 N -0.37 -6.48 4.00 -368.67 -1.47 -7.96 16 28 C 0.09 0.66 11.46 127.77 1.46 2.13 16 29 C 0.12 1.98 11.38 83.85 0.95 2.93 16 30 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.06 2.64 5.24 -2.39 -0.01 2.62 16 33 H 0.26 15.64 8.73 -92.71 -0.81 14.83 16 34 H 0.41 16.24 7.99 -92.71 -0.74 15.50 16 35 H 0.43 11.51 6.08 -92.71 -0.56 10.94 16 36 H 0.15 3.92 5.74 -2.91 -0.02 3.90 16 37 H 0.17 1.73 8.06 -2.91 -0.02 1.70 16 38 H 0.20 1.49 8.06 -2.91 -0.02 1.46 16 39 H 0.17 4.62 7.19 -2.91 -0.02 4.60 16 40 H 0.09 0.45 8.14 -2.39 -0.02 0.44 16 41 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.12 0.13 8.14 -2.39 -0.02 0.11 16 43 H 0.21 2.02 8.06 -2.91 -0.02 2.00 16 Total: -1.00 -72.00 368.79 1.89 -70.12 By element: Atomic # 1 Polarization: 34.57 SS G_CDS: -0.36 Total: 34.21 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: 7.86 Total: 16.35 kcal Atomic # 7 Polarization: -123.98 SS G_CDS: -7.32 Total: -131.30 kcal Atomic # 8 Polarization: -39.75 SS G_CDS: -0.10 Total: -39.84 kcal Atomic # 14 Polarization: 48.66 SS G_CDS: 1.81 Total: 50.47 kcal Total: -72.00 1.89 -70.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326127317.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.302 kcal (2) G-P(sol) polarization free energy of solvation -72.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds