Wall clock time and date at job start Wed Apr 1 2020 02:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34756 * 125.87969 * 2 1 4 4 C 1.36556 * 107.60375 * 180.02562 * 3 2 1 5 5 C 1.48268 * 126.23993 * 179.97438 * 4 3 2 6 6 N 1.32619 * 119.78875 * 324.99739 * 5 4 3 7 7 C 1.31797 * 121.68756 * 180.02562 * 6 5 4 8 8 C 1.38281 * 121.05759 * 0.02562 * 7 6 5 9 9 C 1.38640 * 119.45229 * 0.27173 * 8 7 6 10 10 C 1.39096 * 118.44965 * 359.44405 * 9 8 7 11 11 N 1.39623 * 120.53866 * 180.27834 * 10 9 8 12 12 C 1.34777 * 119.99840 * 325.44143 * 11 10 9 13 13 O 1.21380 * 120.00350 * 4.44227 * 12 11 10 14 14 C 1.49331 * 119.99444 * 184.45058 * 12 11 10 15 15 O 1.21360 * 120.00177 * 359.97438 * 14 12 11 16 16 N 1.34777 * 119.99444 * 179.97438 * 14 12 11 17 17 C 1.46503 * 119.99900 * 179.97438 * 16 14 12 18 18 C 1.53002 * 109.47245 * 180.02562 * 17 16 14 19 19 C 1.50699 * 109.46814 * 180.02562 * 18 17 16 20 20 H 1.07993 * 120.00502 * 359.97438 * 19 18 17 21 21 C 1.37880 * 119.99790 * 180.02562 * 19 18 17 22 22 N 1.31507 * 120.00219 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99815 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.46976 * 90.00718 * 23 21 19 25 25 H 1.48506 * 109.47175 * 210.00111 * 23 21 19 26 26 H 1.48491 * 109.47411 * 330.00466 * 23 21 19 27 27 C 1.40932 * 107.51177 * 0.24379 * 4 3 2 28 28 N 1.30638 * 108.07933 * 359.58887 * 27 4 3 29 29 H 1.08995 * 109.47368 * 89.99516 * 1 2 3 30 30 H 1.09002 * 109.47448 * 209.99932 * 1 2 3 31 31 H 1.09006 * 109.46918 * 329.99641 * 1 2 3 32 32 H 1.08004 * 126.19812 * 0.02562 * 3 2 1 33 33 H 1.07999 * 119.47398 * 180.02562 * 7 6 5 34 34 H 1.08007 * 120.27231 * 180.02562 * 8 7 6 35 35 H 1.07997 * 120.77496 * 179.70207 * 9 8 7 36 36 H 0.96998 * 119.99948 * 145.44602 * 11 10 9 37 37 H 0.96998 * 120.00609 * 359.97438 * 16 14 12 38 38 H 1.09007 * 109.47066 * 300.00045 * 17 16 14 39 39 H 1.09002 * 109.47230 * 59.99765 * 17 16 14 40 40 H 1.08993 * 109.46863 * 299.99848 * 18 17 16 41 41 H 1.08996 * 109.47093 * 60.00037 * 18 17 16 42 42 H 0.97005 * 120.00232 * 179.97438 * 22 21 19 43 43 H 1.08000 * 125.95362 * 179.72263 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2547 1.0919 0.0000 4 6 3.5514 0.6636 -0.0006 5 6 4.7587 1.5243 -0.0013 6 7 4.7476 2.6743 -0.6617 7 6 5.7996 3.4678 -0.6878 8 6 6.9645 3.1302 -0.0237 9 6 7.0283 1.9351 0.6761 10 6 5.9035 1.1170 0.6944 11 7 5.9178 -0.0933 1.3904 12 6 7.0496 -0.8226 1.4508 13 8 8.0767 -0.3901 0.9698 14 6 7.0398 -2.1628 2.1093 15 8 6.0129 -2.5951 2.5904 16 7 8.1715 -2.8924 2.1692 17 6 8.1621 -4.2070 2.8157 18 6 9.5629 -4.8187 2.7480 19 6 9.5530 -6.1712 3.4125 20 1 8.6393 -6.5559 3.8407 21 6 10.7110 -6.9172 3.4747 22 7 10.7026 -8.0973 4.0550 23 14 12.2917 -6.2515 2.7346 24 1 13.0311 -5.4757 3.7625 25 1 13.1338 -7.3818 2.2670 26 1 11.9670 -5.3679 1.5862 27 6 3.5326 -0.7456 -0.0067 28 7 2.2854 -1.1344 -0.0006 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.9224 2.1195 0.0004 33 1 5.7511 4.3967 -1.2367 34 1 7.8190 3.7902 -0.0532 35 1 7.9290 1.6480 1.1984 36 1 5.1131 -0.4093 1.8303 37 1 8.9921 -2.5471 1.7844 38 1 7.8641 -4.0970 3.8585 39 1 7.4552 -4.8592 2.3028 40 1 9.8612 -4.9286 1.7054 41 1 10.2694 -4.1664 3.2612 42 1 11.5171 -8.6222 4.0984 43 1 4.3983 -1.3912 -0.0128 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326130806.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:21 Heat of formation + Delta-G solvation = 53.551062 kcal Electronic energy + Delta-G solvation = -28440.833081 eV Core-core repulsion = 24295.391063 eV Total energy + Delta-G solvation = -4145.442018 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.82611 -41.01961 -39.88895 -38.46187 -35.91639 -35.01180 -33.88891 -32.84907 -32.63988 -31.12859 -30.33909 -29.47634 -27.20926 -26.21504 -24.51775 -23.86008 -22.61395 -21.34764 -20.97194 -20.91370 -20.30606 -18.82290 -17.82467 -17.54835 -16.95521 -16.63000 -16.29179 -16.15043 -15.81256 -15.67938 -15.03497 -14.89870 -14.51561 -14.27056 -14.20183 -14.05219 -13.79129 -13.41646 -13.33857 -13.16802 -13.06001 -12.93619 -12.64040 -12.50398 -11.69571 -11.54187 -11.28697 -11.21706 -11.09150 -10.48039 -10.38020 -10.11356 -10.03063 -9.95407 -9.81653 -9.50004 -9.35287 -9.11503 -8.85581 -8.63704 -8.20013 -6.14140 -4.15129 0.52784 0.91275 1.46947 1.58011 2.10577 2.23360 2.42568 3.15585 3.24949 3.33259 3.34557 3.56545 3.61412 3.94590 4.18314 4.35890 4.45479 4.46192 4.56183 4.65651 4.72827 4.80890 4.83842 5.00119 5.02069 5.18868 5.19603 5.32414 5.56706 5.69683 5.88856 5.90458 5.93594 6.06067 6.16891 6.38815 6.43597 6.44689 6.55232 6.75750 7.01525 7.14891 7.30281 7.37703 7.58826 7.64972 7.69630 8.07662 8.39401 8.89141 9.45589 10.98563 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.013963 B = 0.002376 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.792045 B =11781.146935 C =13537.248033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.372 5.372 3 C 0.104 3.896 4 C -0.211 4.211 5 C 0.198 3.802 6 N -0.467 5.467 7 C 0.089 3.911 8 C -0.162 4.162 9 C -0.073 4.073 10 C 0.101 3.899 11 N -0.641 5.641 12 C 0.508 3.492 13 O -0.501 6.501 14 C 0.500 3.500 15 O -0.521 6.521 16 N -0.687 5.687 17 C 0.127 3.873 18 C -0.024 4.024 19 C -0.525 4.525 20 H 0.077 0.923 21 C 0.071 3.929 22 N -0.897 5.897 23 Si 0.881 3.119 24 H -0.276 1.276 25 H -0.286 1.286 26 H -0.265 1.265 27 C 0.071 3.929 28 N -0.284 5.284 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.182 0.818 33 H 0.158 0.842 34 H 0.139 0.861 35 H 0.153 0.847 36 H 0.426 0.574 37 H 0.410 0.590 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.025 0.975 41 H 0.020 0.980 42 H 0.265 0.735 43 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.581 26.042 -9.433 32.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.152 5.152 3 C -0.045 4.045 4 C -0.223 4.223 5 C 0.058 3.942 6 N -0.176 5.176 7 C -0.069 4.069 8 C -0.182 4.182 9 C -0.100 4.100 10 C 0.003 3.997 11 N -0.289 5.289 12 C 0.291 3.709 13 O -0.374 6.374 14 C 0.279 3.721 15 O -0.398 6.398 16 N -0.338 5.338 17 C 0.005 3.995 18 C -0.061 4.061 19 C -0.563 4.563 20 H 0.095 0.905 21 C -0.132 4.132 22 N -0.535 5.535 23 Si 0.708 3.292 24 H -0.202 1.202 25 H -0.212 1.212 26 H -0.189 1.189 27 C -0.117 4.117 28 N -0.104 5.104 29 H 0.096 0.904 30 H 0.111 0.889 31 H 0.108 0.892 32 H 0.199 0.801 33 H 0.176 0.824 34 H 0.157 0.843 35 H 0.170 0.830 36 H 0.265 0.735 37 H 0.245 0.755 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.043 0.957 41 H 0.039 0.961 42 H 0.075 0.925 43 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -18.184 24.998 -9.793 32.427 hybrid contribution 2.302 0.725 0.085 2.415 sum -15.883 25.723 -9.709 31.752 Atomic orbital electron populations 1.21944 0.73625 1.04880 1.03736 1.48501 1.07075 1.03838 1.55820 1.22600 0.90147 0.93502 0.98271 1.18409 0.91306 0.92249 1.20352 1.18733 0.91010 0.91801 0.92658 1.67707 1.29600 1.03464 1.16846 1.22670 0.88404 0.98579 0.97253 1.22090 0.99811 0.97201 0.99126 1.21739 0.98431 0.92037 0.97811 1.18577 0.96309 0.87512 0.97261 1.43175 1.14930 1.19302 1.51522 1.20716 0.83516 0.86546 0.80161 1.90751 1.31034 1.71207 1.44414 1.19667 0.85282 0.85288 0.81868 1.90796 1.31357 1.71226 1.46377 1.46207 1.11150 1.19982 1.56450 1.21766 1.01085 0.79506 0.97110 1.19826 0.91189 0.97215 0.97904 1.20862 0.98005 0.99740 1.37700 0.90507 1.24986 0.98930 0.94641 0.94620 1.69894 1.28552 1.11502 1.43515 0.86769 0.83464 0.78839 0.80153 1.20158 1.21216 1.18949 1.24048 0.95416 0.93607 0.98670 1.77395 1.01481 1.07686 1.23816 0.90388 0.88864 0.89208 0.80067 0.82431 0.84318 0.82970 0.73452 0.75489 0.91093 0.91024 0.95681 0.96135 0.92475 0.79876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.44 11.46 59.84 0.69 1.13 16 2 N -0.37 -3.34 4.00 -67.88 -0.27 -3.61 16 3 C 0.10 0.90 11.38 -16.88 -0.19 0.71 16 4 C -0.21 -2.25 5.56 -105.36 -0.59 -2.84 16 5 C 0.20 2.19 6.69 -82.74 -0.55 1.64 16 6 N -0.47 -4.87 10.23 -9.63 -0.10 -4.97 16 7 C 0.09 0.74 11.17 -17.55 -0.20 0.54 16 8 C -0.16 -1.34 10.10 -39.42 -0.40 -1.74 16 9 C -0.07 -0.77 8.80 -39.11 -0.34 -1.11 16 10 C 0.10 1.14 6.30 -83.32 -0.52 0.62 16 11 N -0.64 -7.46 3.92 -10.02 -0.04 -7.50 16 12 C 0.51 6.85 7.74 -11.64 -0.09 6.76 16 13 O -0.50 -7.27 13.93 5.47 0.08 -7.19 16 14 C 0.50 7.77 7.88 -11.64 -0.09 7.67 16 15 O -0.52 -9.12 16.48 5.49 0.09 -9.03 16 16 N -0.69 -11.13 5.55 -60.76 -0.34 -11.47 16 17 C 0.13 2.44 5.61 -4.04 -0.02 2.42 16 18 C -0.02 -0.52 4.16 -27.88 -0.12 -0.64 16 19 C -0.52 -14.36 9.66 -34.44 -0.33 -14.69 16 20 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 21 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 22 N -0.90 -26.97 13.96 55.43 0.77 -26.19 16 23 Si 0.88 20.90 27.47 -169.99 -4.67 16.23 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 25 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.26 -5.97 6.54 56.52 0.37 -5.60 16 27 C 0.07 0.83 10.15 -17.04 -0.17 0.66 16 28 N -0.28 -3.45 12.54 30.82 0.39 -3.07 16 29 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.18 1.04 8.06 -52.48 -0.42 0.62 16 33 H 0.16 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.14 0.78 8.06 -52.48 -0.42 0.35 16 35 H 0.15 1.69 6.29 -52.49 -0.33 1.36 16 36 H 0.43 4.76 6.62 -40.82 -0.27 4.49 16 37 H 0.41 6.07 7.94 -40.82 -0.32 5.75 16 38 H 0.07 1.41 8.14 -51.92 -0.42 0.98 16 39 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 40 H 0.02 0.55 7.20 -51.93 -0.37 0.18 16 41 H 0.02 0.44 7.57 -51.93 -0.39 0.05 16 42 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 43 H 0.18 2.12 7.26 -52.49 -0.38 1.74 16 LS Contribution 375.01 15.07 5.65 5.65 Total: -1.00 -34.20 375.01 -6.51 -40.71 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -5.04 Total: 7.42 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -3.03 Total: 3.02 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: 0.41 Total: -56.81 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: 0.17 Total: -16.22 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.67 Total: 16.23 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.20 -6.51 -40.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326130806.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.256 kcal (2) G-P(sol) polarization free energy of solvation -34.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds