Wall clock time and date at job start Wed Apr 1 2020 02:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34756 * 125.87969 * 2 1 4 4 C 1.36556 * 107.60375 * 180.02562 * 3 2 1 5 5 C 1.48268 * 126.23993 * 179.97438 * 4 3 2 6 6 N 1.32619 * 119.78875 * 324.99739 * 5 4 3 7 7 C 1.31797 * 121.68756 * 180.02562 * 6 5 4 8 8 C 1.38281 * 121.05759 * 0.02562 * 7 6 5 9 9 C 1.38640 * 119.45229 * 0.27173 * 8 7 6 10 10 C 1.39096 * 118.44965 * 359.44405 * 9 8 7 11 11 N 1.39623 * 120.53866 * 180.27834 * 10 9 8 12 12 C 1.34777 * 119.99840 * 325.44143 * 11 10 9 13 13 O 1.21380 * 120.00350 * 4.44227 * 12 11 10 14 14 C 1.49331 * 119.99444 * 184.45058 * 12 11 10 15 15 O 1.21360 * 120.00177 * 359.97438 * 14 12 11 16 16 N 1.34777 * 119.99444 * 179.97438 * 14 12 11 17 17 C 1.46503 * 119.99900 * 179.97438 * 16 14 12 18 18 C 1.53002 * 109.47245 * 180.02562 * 17 16 14 19 19 C 1.50699 * 109.46814 * 180.02562 * 18 17 16 20 20 H 1.07993 * 120.00502 * 359.97438 * 19 18 17 21 21 C 1.37880 * 119.99790 * 180.02562 * 19 18 17 22 22 N 1.31507 * 120.00219 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99815 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.46976 * 90.00718 * 23 21 19 25 25 H 1.48506 * 109.47175 * 210.00111 * 23 21 19 26 26 H 1.48491 * 109.47411 * 330.00466 * 23 21 19 27 27 C 1.40932 * 107.51177 * 0.24379 * 4 3 2 28 28 N 1.30638 * 108.07933 * 359.58887 * 27 4 3 29 29 H 1.08995 * 109.47368 * 89.99516 * 1 2 3 30 30 H 1.09002 * 109.47448 * 209.99932 * 1 2 3 31 31 H 1.09006 * 109.46918 * 329.99641 * 1 2 3 32 32 H 1.08004 * 126.19812 * 0.02562 * 3 2 1 33 33 H 1.07999 * 119.47398 * 180.02562 * 7 6 5 34 34 H 1.08007 * 120.27231 * 180.02562 * 8 7 6 35 35 H 1.07997 * 120.77496 * 179.70207 * 9 8 7 36 36 H 0.96998 * 119.99948 * 145.44602 * 11 10 9 37 37 H 0.96998 * 120.00609 * 359.97438 * 16 14 12 38 38 H 1.09007 * 109.47066 * 300.00045 * 17 16 14 39 39 H 1.09002 * 109.47230 * 59.99765 * 17 16 14 40 40 H 1.08993 * 109.46863 * 299.99848 * 18 17 16 41 41 H 1.08996 * 109.47093 * 60.00037 * 18 17 16 42 42 H 0.97005 * 120.00232 * 179.97438 * 22 21 19 43 43 H 1.08000 * 125.95362 * 179.72263 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2547 1.0919 0.0000 4 6 3.5514 0.6636 -0.0006 5 6 4.7587 1.5243 -0.0013 6 7 4.7476 2.6743 -0.6617 7 6 5.7996 3.4678 -0.6878 8 6 6.9645 3.1302 -0.0237 9 6 7.0283 1.9351 0.6761 10 6 5.9035 1.1170 0.6944 11 7 5.9178 -0.0933 1.3904 12 6 7.0496 -0.8226 1.4508 13 8 8.0767 -0.3901 0.9698 14 6 7.0398 -2.1628 2.1093 15 8 6.0129 -2.5951 2.5904 16 7 8.1715 -2.8924 2.1692 17 6 8.1621 -4.2070 2.8157 18 6 9.5629 -4.8187 2.7480 19 6 9.5530 -6.1712 3.4125 20 1 8.6393 -6.5559 3.8407 21 6 10.7110 -6.9172 3.4747 22 7 10.7026 -8.0973 4.0550 23 14 12.2917 -6.2515 2.7346 24 1 13.0311 -5.4757 3.7625 25 1 13.1338 -7.3818 2.2670 26 1 11.9670 -5.3679 1.5862 27 6 3.5326 -0.7456 -0.0067 28 7 2.2854 -1.1344 -0.0006 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.9224 2.1195 0.0004 33 1 5.7511 4.3967 -1.2367 34 1 7.8190 3.7902 -0.0532 35 1 7.9290 1.6480 1.1984 36 1 5.1131 -0.4093 1.8303 37 1 8.9921 -2.5471 1.7844 38 1 7.8641 -4.0970 3.8585 39 1 7.4552 -4.8592 2.3028 40 1 9.8612 -4.9286 1.7054 41 1 10.2694 -4.1664 3.2612 42 1 11.5171 -8.6222 4.0984 43 1 4.3983 -1.3912 -0.0128 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326130806.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:20 Heat of formation + Delta-G solvation = 28.111442 kcal Electronic energy + Delta-G solvation = -28441.936226 eV Core-core repulsion = 24295.391063 eV Total energy + Delta-G solvation = -4146.545163 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.63967 -41.96576 -40.84044 -39.60813 -37.13457 -36.29412 -34.82231 -34.52586 -33.35009 -32.17352 -31.90465 -30.20321 -27.87284 -27.62796 -25.81530 -24.63368 -23.68890 -22.64550 -22.09423 -21.68344 -21.43541 -19.95501 -19.03668 -18.56860 -18.40695 -17.64436 -17.40530 -16.91683 -16.77067 -16.43557 -16.30915 -16.22063 -15.82245 -15.51846 -15.26871 -15.02470 -14.75735 -14.61587 -14.58078 -14.16090 -13.90848 -13.60723 -13.48884 -13.39895 -13.15204 -13.07628 -12.83047 -12.23507 -12.20458 -12.09284 -11.85760 -11.78466 -11.51708 -11.05015 -10.80759 -10.79225 -10.54020 -10.45380 -10.29348 -9.91026 -8.95642 -8.30235 -6.37140 -0.29034 0.10884 0.44878 0.84961 1.12864 1.39646 1.41498 1.52519 1.53805 1.63676 1.97438 2.36336 2.46148 2.86054 3.05077 3.20627 3.27984 3.55331 3.83984 3.92028 3.99192 4.13622 4.19360 4.25043 4.27994 4.38412 4.44470 4.59508 4.67591 4.71966 4.72501 4.82476 4.91929 4.94499 5.12263 5.22049 5.28017 5.36945 5.37479 5.57576 5.65368 5.81730 5.98466 6.16779 6.23088 6.52639 6.54556 6.70146 6.81593 6.96626 7.27454 8.86061 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.013963 B = 0.002376 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.792045 B =11781.146935 C =13537.248033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.369 5.369 3 C 0.117 3.883 4 C -0.230 4.230 5 C 0.194 3.806 6 N -0.479 5.479 7 C 0.094 3.906 8 C -0.155 4.155 9 C -0.084 4.084 10 C 0.077 3.923 11 N -0.627 5.627 12 C 0.518 3.482 13 O -0.510 6.510 14 C 0.504 3.496 15 O -0.542 6.542 16 N -0.682 5.682 17 C 0.142 3.858 18 C -0.017 4.017 19 C -0.536 4.536 20 H 0.035 0.965 21 C 0.007 3.993 22 N -0.948 5.948 23 Si 0.953 3.047 24 H -0.265 1.265 25 H -0.287 1.287 26 H -0.240 1.240 27 C 0.058 3.942 28 N -0.322 5.322 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.122 0.878 32 H 0.214 0.786 33 H 0.194 0.806 34 H 0.170 0.830 35 H 0.145 0.855 36 H 0.426 0.574 37 H 0.419 0.581 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.036 0.964 41 H 0.036 0.964 42 H 0.268 0.732 43 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.431 29.888 -11.081 35.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.149 5.149 3 C -0.033 4.033 4 C -0.243 4.243 5 C 0.054 3.946 6 N -0.189 5.189 7 C -0.064 4.064 8 C -0.175 4.175 9 C -0.112 4.112 10 C -0.019 4.019 11 N -0.275 5.275 12 C 0.300 3.700 13 O -0.385 6.385 14 C 0.284 3.716 15 O -0.421 6.421 16 N -0.334 5.334 17 C 0.019 3.981 18 C -0.055 4.055 19 C -0.574 4.574 20 H 0.054 0.946 21 C -0.191 4.191 22 N -0.588 5.588 23 Si 0.776 3.224 24 H -0.190 1.190 25 H -0.213 1.213 26 H -0.163 1.163 27 C -0.129 4.129 28 N -0.143 5.143 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.141 0.859 32 H 0.231 0.769 33 H 0.211 0.789 34 H 0.187 0.813 35 H 0.163 0.837 36 H 0.266 0.734 37 H 0.257 0.743 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.077 0.923 43 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -18.074 28.878 -11.456 35.942 hybrid contribution 2.071 -0.394 0.596 2.191 sum -16.003 28.484 -10.860 34.429 Atomic orbital electron populations 1.22341 0.71162 1.06443 1.05129 1.48854 1.08405 1.03084 1.54507 1.23058 0.89394 0.94570 0.96299 1.18534 0.92315 0.91725 1.21701 1.18773 0.90898 0.92194 0.92698 1.67766 1.30651 1.03466 1.16968 1.23312 0.87627 0.99101 0.96376 1.22423 1.00870 0.96465 0.97701 1.21846 0.97851 0.93054 0.98407 1.18730 0.97220 0.87508 0.98468 1.43015 1.14157 1.19360 1.50980 1.20114 0.84015 0.85668 0.80219 1.90748 1.31401 1.71166 1.45200 1.19983 0.84497 0.85930 0.81181 1.90788 1.32115 1.71959 1.47189 1.45935 1.11996 1.18970 1.56532 1.21316 0.99196 0.80793 0.96804 1.19694 0.93126 0.94802 0.97870 1.21199 0.96601 1.02107 1.37530 0.94628 1.26005 1.03168 0.94776 0.95121 1.70058 1.29834 1.13353 1.45555 0.85622 0.78176 0.78483 0.80144 1.19010 1.21273 1.16305 1.23968 0.95240 0.94319 0.99355 1.77306 1.02063 1.09721 1.25205 0.89040 0.89087 0.85926 0.76928 0.78926 0.81292 0.83736 0.73378 0.74346 0.92034 0.92174 0.94564 0.94562 0.92325 0.80941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.61 11.46 127.77 1.46 2.08 16 2 N -0.37 -6.17 4.00 -368.68 -1.47 -7.65 16 3 C 0.12 1.82 11.38 83.85 0.95 2.77 16 4 C -0.23 -4.79 5.56 -20.34 -0.11 -4.90 16 5 C 0.19 4.08 6.69 42.13 0.28 4.36 16 6 N -0.48 -8.88 10.23 -184.37 -1.89 -10.77 16 7 C 0.09 1.25 11.17 84.71 0.95 2.20 16 8 C -0.15 -2.10 10.10 22.38 0.23 -1.88 16 9 C -0.08 -1.66 8.80 22.57 0.20 -1.46 16 10 C 0.08 1.70 6.30 38.54 0.24 1.94 16 11 N -0.63 -14.70 3.92 -303.97 -1.19 -15.89 16 12 C 0.52 13.91 7.74 87.23 0.68 14.58 16 13 O -0.51 -14.45 13.93 -3.34 -0.05 -14.50 16 14 C 0.50 15.73 7.88 87.23 0.69 16.41 16 15 O -0.54 -19.45 16.48 -3.28 -0.05 -19.50 16 16 N -0.68 -21.79 5.55 -464.51 -2.58 -24.37 16 17 C 0.14 5.51 5.61 86.38 0.48 6.00 16 18 C -0.02 -0.75 4.16 29.85 0.12 -0.63 16 19 C -0.54 -30.02 9.66 25.60 0.25 -29.77 16 20 H 0.04 2.21 7.99 -2.91 -0.02 2.19 16 21 C 0.01 0.39 5.47 84.66 0.46 0.85 16 22 N -0.95 -58.66 13.96 21.45 0.30 -58.36 16 23 Si 0.95 42.50 27.47 68.60 1.88 44.39 16 24 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 25 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 26 H -0.24 -9.66 6.54 99.48 0.65 -9.01 16 27 C 0.06 1.41 10.15 85.53 0.87 2.27 16 28 N -0.32 -7.95 12.54 -56.42 -0.71 -8.65 16 29 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.09 0.69 8.14 -2.39 -0.02 0.68 16 31 H 0.12 0.05 8.14 -2.38 -0.02 0.03 16 32 H 0.21 1.77 8.06 -2.91 -0.02 1.74 16 33 H 0.19 1.12 8.06 -2.91 -0.02 1.09 16 34 H 0.17 1.22 8.06 -2.91 -0.02 1.19 16 35 H 0.14 3.06 6.29 -2.91 -0.02 3.04 16 36 H 0.43 9.83 6.62 -92.71 -0.61 9.22 16 37 H 0.42 11.85 7.94 -92.71 -0.74 11.11 16 38 H 0.06 2.50 8.14 -2.38 -0.02 2.48 16 39 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 40 H 0.04 1.52 7.20 -2.39 -0.02 1.50 16 41 H 0.04 1.49 7.57 -2.39 -0.02 1.47 16 42 H 0.27 15.43 8.31 -92.70 -0.77 14.66 16 43 H 0.17 4.30 7.26 -2.91 -0.02 4.28 16 Total: -1.00 -76.30 375.01 1.67 -74.62 By element: Atomic # 1 Polarization: 26.17 SS G_CDS: -0.32 Total: 25.85 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: 7.75 Total: 14.83 kcal Atomic # 7 Polarization: -118.15 SS G_CDS: -7.54 Total: -125.69 kcal Atomic # 8 Polarization: -33.90 SS G_CDS: -0.10 Total: -34.00 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 1.88 Total: 44.39 kcal Total: -76.30 1.67 -74.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326130806.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.735 kcal (2) G-P(sol) polarization free energy of solvation -76.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds