Wall clock time and date at job start Wed Apr 1 2020 02:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47088 * 2 1 4 4 C 1.52998 * 109.47150 * 239.99739 * 2 1 3 5 5 N 1.46499 * 109.46957 * 173.72521 * 4 2 1 6 6 C 1.34780 * 119.99870 * 171.60155 * 5 4 2 7 7 O 1.21276 * 119.99991 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.99890 * 179.97438 * 6 5 4 9 9 S 1.80998 * 109.46900 * 179.97438 * 8 6 5 10 10 C 1.76203 * 99.99639 * 180.02562 * 9 8 6 11 11 H 1.07997 * 120.00382 * 359.97438 * 10 9 8 12 12 C 1.38808 * 119.99829 * 180.02562 * 10 9 8 13 13 N 1.31628 * 119.99572 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99923 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.47145 * 59.99954 * 14 12 10 16 16 H 1.48497 * 109.46886 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47421 * 299.99905 * 14 12 10 18 18 N 1.46906 * 109.46980 * 119.99682 * 2 1 3 19 19 C 1.46897 * 110.99920 * 84.93128 * 18 2 1 20 20 C 1.46894 * 110.99928 * 208.88556 * 18 2 1 21 21 H 1.09005 * 109.52189 * 311.45896 * 20 18 2 22 22 C 1.53243 * 109.52603 * 191.33202 * 20 18 2 23 23 C 1.53242 * 108.57172 * 184.47598 * 22 20 18 24 24 C 1.50590 * 109.15574 * 55.61362 * 23 22 20 25 25 O 1.21224 * 119.35587 * 150.92961 * 24 23 22 26 26 N 1.34136 * 121.28376 * 330.90550 * 24 23 22 27 27 C 1.34135 * 122.58731 * 0.54342 * 26 24 23 28 28 O 1.21233 * 119.35884 * 179.45553 * 27 26 24 29 29 H 1.08997 * 109.47407 * 295.00254 * 1 2 3 30 30 H 1.08996 * 109.47057 * 55.00353 * 1 2 3 31 31 H 1.09002 * 109.47079 * 175.00464 * 1 2 3 32 32 H 1.08997 * 109.47469 * 53.71796 * 4 2 1 33 33 H 1.09005 * 109.46873 * 293.72048 * 4 2 1 34 34 H 0.97000 * 120.00122 * 351.58898 * 5 4 2 35 35 H 1.08999 * 109.47242 * 59.99548 * 8 6 5 36 36 H 1.08999 * 109.46850 * 299.99544 * 8 6 5 37 37 H 0.97007 * 119.99615 * 180.02562 * 13 12 10 38 38 H 1.09000 * 109.47339 * 67.36120 * 19 18 2 39 39 H 1.09000 * 109.46866 * 187.36813 * 19 18 2 40 40 H 1.09000 * 109.47142 * 307.35890 * 19 18 2 41 41 H 1.08994 * 109.61644 * 304.20694 * 22 20 18 42 42 H 1.09003 * 109.61852 * 64.75268 * 22 20 18 43 43 H 1.08997 * 109.52392 * 175.51665 * 23 22 20 44 44 H 1.08999 * 109.52091 * 295.65033 * 23 22 20 45 45 H 0.97006 * 118.70661 * 180.54504 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.4972 -0.5919 -1.3270 6 6 4.1873 -1.2895 -2.2510 7 8 3.6019 -2.0246 -3.0177 8 6 5.6862 -1.1560 -2.3315 9 16 6.3152 -2.2103 -3.6614 10 6 8.0391 -1.8686 -3.5332 11 1 8.3986 -1.1785 -2.7843 12 6 8.9349 -2.4857 -4.3954 13 7 8.4966 -3.3265 -5.3084 14 14 10.7623 -2.1230 -4.2599 15 1 11.2440 -2.5053 -2.9081 16 1 11.4992 -2.9031 -5.2864 17 1 10.9966 -0.6728 -4.4770 18 7 2.0197 -0.6925 1.1995 19 6 2.0809 -2.1439 0.9814 20 6 3.3272 -0.1668 1.6139 21 1 3.9917 -0.1214 0.7510 22 6 3.9341 -1.0854 2.6799 23 6 5.2415 -0.4592 3.1768 24 6 4.9649 0.9370 3.6689 25 8 5.6579 1.4062 4.5459 26 7 3.9671 1.6716 3.1552 27 6 3.1549 1.2135 2.1910 28 8 2.2649 1.9243 1.7760 29 1 -0.3634 0.4343 0.9313 30 1 -0.3633 0.5894 -0.8418 31 1 -0.3633 -1.0238 -0.0895 32 1 1.5878 -0.2766 -2.1356 33 1 1.7713 -1.7763 -1.1947 34 1 3.9654 -0.0041 -0.7137 35 1 6.1297 -1.4630 -1.3843 36 1 5.9480 -0.1178 -2.5357 37 1 9.1227 -3.7581 -5.9107 38 1 2.8519 -2.3683 0.2443 39 1 2.3198 -2.6426 1.9207 40 1 1.1163 -2.4976 0.6174 41 1 3.2384 -1.1894 3.5124 42 1 4.1389 -2.0641 2.2460 43 1 5.6460 -1.0592 3.9919 44 1 5.9615 -0.4223 2.3593 45 1 3.8272 2.5696 3.4945 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329384712.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:36 Heat of formation + Delta-G solvation = -85.585112 kcal Electronic energy + Delta-G solvation = -28695.347125 eV Core-core repulsion = 24647.022910 eV Total energy + Delta-G solvation = -4048.324215 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.08389 -40.09578 -39.15963 -38.08293 -35.96293 -34.47259 -33.42499 -32.48902 -31.40865 -29.52266 -28.71709 -26.20019 -25.87828 -25.36156 -23.84454 -23.10710 -20.94688 -20.43640 -19.48067 -18.21408 -17.99383 -17.54416 -17.05758 -16.45199 -16.38724 -16.18226 -15.59757 -15.17487 -15.12518 -14.87156 -14.85663 -14.61331 -14.08212 -13.85290 -13.49760 -13.35805 -13.21512 -12.96747 -12.88115 -12.67524 -12.46595 -12.26652 -12.11009 -11.90216 -11.75989 -11.47998 -11.15175 -11.10619 -11.08619 -10.82488 -10.70666 -10.64217 -10.31164 -9.89581 -9.56254 -9.17974 -9.10569 -8.66621 -8.32255 -6.57736 -6.27626 -3.99172 1.07688 2.22788 2.33618 2.90346 2.95680 3.19096 3.22436 3.24231 3.25885 3.51848 3.59522 3.93678 4.08560 4.14476 4.30939 4.38514 4.57842 4.67652 4.85910 5.03691 5.03977 5.07737 5.11884 5.15269 5.19068 5.30711 5.40362 5.41716 5.49755 5.54121 5.57481 5.68763 5.70443 5.75569 5.84044 6.00222 6.02775 6.31504 6.42427 6.55098 6.57905 6.94242 7.39755 7.47691 7.53158 8.28502 8.45791 9.17678 10.79670 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.011084 B = 0.003161 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.469107 B = 8856.061180 C =10686.322159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.060 3.940 3 H 0.104 0.896 4 C 0.084 3.916 5 N -0.743 5.743 6 C 0.530 3.470 7 O -0.511 6.511 8 C -0.155 4.155 9 S -0.056 6.056 10 C -0.538 4.538 11 H 0.072 0.928 12 C 0.075 3.925 13 N -0.867 5.867 14 Si 0.918 3.082 15 H -0.274 1.274 16 H -0.282 1.282 17 H -0.274 1.274 18 N -0.513 5.513 19 C 0.012 3.988 20 C 0.055 3.945 21 H 0.090 0.910 22 C -0.123 4.123 23 C -0.145 4.145 24 C 0.525 3.475 25 O -0.503 6.503 26 N -0.673 5.673 27 C 0.532 3.468 28 O -0.482 6.482 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.389 0.611 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.270 0.730 38 H 0.046 0.954 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.090 0.910 42 H 0.102 0.898 43 H 0.121 0.879 44 H 0.117 0.883 45 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.896 6.310 18.333 23.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.048 4.048 3 H 0.122 0.878 4 C -0.041 4.041 5 N -0.402 5.402 6 C 0.316 3.684 7 O -0.384 6.384 8 C -0.306 4.306 9 S 0.170 5.830 10 C -0.687 4.687 11 H 0.090 0.910 12 C -0.134 4.134 13 N -0.502 5.502 14 Si 0.744 3.256 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.199 1.199 18 N -0.238 5.238 19 C -0.136 4.136 20 C -0.058 4.058 21 H 0.107 0.893 22 C -0.161 4.161 23 C -0.185 4.185 24 C 0.314 3.686 25 O -0.375 6.375 26 N -0.339 5.339 27 C 0.319 3.681 28 O -0.353 6.353 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.227 0.773 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.109 0.891 42 H 0.121 0.879 43 H 0.139 0.861 44 H 0.135 0.865 45 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -14.257 5.440 17.416 23.155 hybrid contribution 2.620 1.701 0.684 3.198 sum -11.637 7.141 18.099 22.671 Atomic orbital electron populations 1.21598 0.92539 1.02000 1.02560 1.22290 0.97485 0.99146 0.85925 0.87796 1.22191 0.80622 1.02398 0.98885 1.46448 1.07485 1.48574 1.37665 1.20364 0.89366 0.79159 0.79517 1.90714 1.70744 1.36999 1.39976 1.23552 0.93544 1.06458 1.07062 1.85429 1.04632 1.54897 1.38013 1.22815 0.91717 1.31901 1.22224 0.90999 1.24984 0.99577 0.94459 0.94415 1.70002 1.35468 1.26638 1.18085 0.86233 0.82663 0.78575 0.78102 1.19898 1.20758 1.19920 1.62103 1.22033 1.04955 1.34685 1.22644 1.02771 0.86398 1.01757 1.21923 0.93382 0.91408 0.99045 0.89310 1.21961 0.95607 0.99892 0.98643 1.21995 0.99899 0.91547 1.05030 1.21050 0.78284 0.88463 0.80819 1.90807 1.45653 1.72400 1.28663 1.44857 1.31350 1.20112 1.37626 1.20755 0.80104 0.89306 0.77941 1.90742 1.29976 1.57757 1.56805 0.91271 0.91961 0.92571 0.91218 0.90034 0.77339 0.89409 0.89302 0.92056 0.93507 0.90694 0.90364 0.89107 0.87910 0.86093 0.86520 0.74723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.03 9.37 37.16 0.35 -0.68 16 2 C 0.06 0.53 1.99 -67.71 -0.13 0.39 16 3 H 0.10 1.04 5.64 -51.93 -0.29 0.75 16 4 C 0.08 0.91 4.39 -4.04 -0.02 0.89 16 5 N -0.74 -8.96 4.42 -60.29 -0.27 -9.22 16 6 C 0.53 9.11 7.85 -10.98 -0.09 9.03 16 7 O -0.51 -10.92 15.82 5.56 0.09 -10.84 16 8 C -0.16 -2.92 6.16 36.01 0.22 -2.70 16 9 S -0.06 -1.46 20.57 -107.50 -2.21 -3.68 16 10 C -0.54 -14.83 9.50 30.94 0.29 -14.53 16 11 H 0.07 1.86 7.80 -52.49 -0.41 1.45 16 12 C 0.08 2.09 5.49 -17.43 -0.10 1.99 16 13 N -0.87 -25.55 13.22 55.49 0.73 -24.82 16 14 Si 0.92 20.85 29.55 -169.99 -5.02 15.83 16 15 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 18 N -0.51 -3.99 4.38 -228.21 -1.00 -4.99 16 19 C 0.01 0.08 7.18 60.06 0.43 0.52 16 20 C 0.05 0.38 2.09 -68.80 -0.14 0.24 16 21 H 0.09 0.62 4.58 -51.93 -0.24 0.39 16 22 C -0.12 -0.60 4.37 -26.48 -0.12 -0.72 16 23 C -0.14 -0.73 6.07 -27.81 -0.17 -0.90 16 24 C 0.52 4.09 7.74 -11.32 -0.09 4.00 16 25 O -0.50 -5.72 17.87 5.61 0.10 -5.62 16 26 N -0.67 -4.92 5.09 -11.75 -0.06 -4.98 16 27 C 0.53 4.39 7.49 -11.33 -0.08 4.30 16 28 O -0.48 -5.25 14.94 5.60 0.08 -5.16 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.41 7.48 -51.93 -0.39 0.03 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.08 0.93 5.91 -51.93 -0.31 0.62 16 34 H 0.39 3.81 5.50 -40.82 -0.22 3.58 16 35 H 0.09 1.46 8.14 -51.92 -0.42 1.04 16 36 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 37 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.05 0.42 6.27 -51.93 -0.33 0.10 16 39 H 0.07 0.42 6.55 -51.93 -0.34 0.08 16 40 H 0.08 0.56 7.02 -51.93 -0.36 0.20 16 41 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.10 0.43 6.75 -51.93 -0.35 0.08 16 43 H 0.12 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.12 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.41 2.79 8.79 -40.82 -0.36 2.43 16 LS Contribution 372.62 15.07 5.62 5.62 Total: -1.00 -35.88 372.62 -7.70 -43.58 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -6.12 Total: 2.44 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: 0.36 Total: 1.83 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: -0.59 Total: -44.01 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: 0.27 Total: -21.62 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: -1.46 SS G_CDS: -2.21 Total: -3.68 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.88 -7.70 -43.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329384712.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.004 kcal (2) G-P(sol) polarization free energy of solvation -35.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds