Wall clock time and date at job start Wed Apr 1 2020 02:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47088 * 2 1 4 4 C 1.52998 * 109.47150 * 239.99739 * 2 1 3 5 5 N 1.46499 * 109.46957 * 173.72521 * 4 2 1 6 6 C 1.34780 * 119.99870 * 171.60155 * 5 4 2 7 7 O 1.21276 * 119.99991 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.99890 * 179.97438 * 6 5 4 9 9 S 1.80998 * 109.46900 * 179.97438 * 8 6 5 10 10 C 1.76203 * 99.99639 * 180.02562 * 9 8 6 11 11 H 1.07997 * 120.00382 * 359.97438 * 10 9 8 12 12 C 1.38808 * 119.99829 * 180.02562 * 10 9 8 13 13 N 1.31628 * 119.99572 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99923 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.47145 * 59.99954 * 14 12 10 16 16 H 1.48497 * 109.46886 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47421 * 299.99905 * 14 12 10 18 18 N 1.46906 * 109.46980 * 119.99682 * 2 1 3 19 19 C 1.46897 * 110.99920 * 84.93128 * 18 2 1 20 20 C 1.46894 * 110.99928 * 208.88556 * 18 2 1 21 21 H 1.09005 * 109.52189 * 311.45896 * 20 18 2 22 22 C 1.53243 * 109.52603 * 191.33202 * 20 18 2 23 23 C 1.53242 * 108.57172 * 184.47598 * 22 20 18 24 24 C 1.50590 * 109.15574 * 55.61362 * 23 22 20 25 25 O 1.21224 * 119.35587 * 150.92961 * 24 23 22 26 26 N 1.34136 * 121.28376 * 330.90550 * 24 23 22 27 27 C 1.34135 * 122.58731 * 0.54342 * 26 24 23 28 28 O 1.21233 * 119.35884 * 179.45553 * 27 26 24 29 29 H 1.08997 * 109.47407 * 295.00254 * 1 2 3 30 30 H 1.08996 * 109.47057 * 55.00353 * 1 2 3 31 31 H 1.09002 * 109.47079 * 175.00464 * 1 2 3 32 32 H 1.08997 * 109.47469 * 53.71796 * 4 2 1 33 33 H 1.09005 * 109.46873 * 293.72048 * 4 2 1 34 34 H 0.97000 * 120.00122 * 351.58898 * 5 4 2 35 35 H 1.08999 * 109.47242 * 59.99548 * 8 6 5 36 36 H 1.08999 * 109.46850 * 299.99544 * 8 6 5 37 37 H 0.97007 * 119.99615 * 180.02562 * 13 12 10 38 38 H 1.09000 * 109.47339 * 67.36120 * 19 18 2 39 39 H 1.09000 * 109.46866 * 187.36813 * 19 18 2 40 40 H 1.09000 * 109.47142 * 307.35890 * 19 18 2 41 41 H 1.08994 * 109.61644 * 304.20694 * 22 20 18 42 42 H 1.09003 * 109.61852 * 64.75268 * 22 20 18 43 43 H 1.08997 * 109.52392 * 175.51665 * 23 22 20 44 44 H 1.08999 * 109.52091 * 295.65033 * 23 22 20 45 45 H 0.97006 * 118.70661 * 180.54504 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.4972 -0.5919 -1.3270 6 6 4.1873 -1.2895 -2.2510 7 8 3.6019 -2.0246 -3.0177 8 6 5.6862 -1.1560 -2.3315 9 16 6.3152 -2.2103 -3.6614 10 6 8.0391 -1.8686 -3.5332 11 1 8.3986 -1.1785 -2.7843 12 6 8.9349 -2.4857 -4.3954 13 7 8.4966 -3.3265 -5.3084 14 14 10.7623 -2.1230 -4.2599 15 1 11.2440 -2.5053 -2.9081 16 1 11.4992 -2.9031 -5.2864 17 1 10.9966 -0.6728 -4.4770 18 7 2.0197 -0.6925 1.1995 19 6 2.0809 -2.1439 0.9814 20 6 3.3272 -0.1668 1.6139 21 1 3.9917 -0.1214 0.7510 22 6 3.9341 -1.0854 2.6799 23 6 5.2415 -0.4592 3.1768 24 6 4.9649 0.9370 3.6689 25 8 5.6579 1.4062 4.5459 26 7 3.9671 1.6716 3.1552 27 6 3.1549 1.2135 2.1910 28 8 2.2649 1.9243 1.7760 29 1 -0.3634 0.4343 0.9313 30 1 -0.3633 0.5894 -0.8418 31 1 -0.3633 -1.0238 -0.0895 32 1 1.5878 -0.2766 -2.1356 33 1 1.7713 -1.7763 -1.1947 34 1 3.9654 -0.0041 -0.7137 35 1 6.1297 -1.4630 -1.3843 36 1 5.9480 -0.1178 -2.5357 37 1 9.1227 -3.7581 -5.9107 38 1 2.8519 -2.3683 0.2443 39 1 2.3198 -2.6426 1.9207 40 1 1.1163 -2.4976 0.6174 41 1 3.2384 -1.1894 3.5124 42 1 4.1389 -2.0641 2.2460 43 1 5.6460 -1.0592 3.9919 44 1 5.9615 -0.4223 2.3593 45 1 3.8272 2.5696 3.4945 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329384712.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:35 Heat of formation + Delta-G solvation = -114.489810 kcal Electronic energy + Delta-G solvation = -28696.600527 eV Core-core repulsion = 24647.022910 eV Total energy + Delta-G solvation = -4049.577617 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.73322 -41.06579 -40.09713 -38.98592 -36.65443 -35.38236 -34.57197 -34.27410 -32.10957 -30.87858 -29.31583 -27.71654 -26.79954 -26.59017 -24.41017 -23.72268 -22.06520 -21.29677 -20.22666 -19.70262 -18.84845 -18.38340 -17.77638 -17.71830 -17.29288 -17.12970 -16.86431 -16.48623 -16.06456 -15.95466 -15.68526 -15.51271 -15.47640 -14.82328 -14.55402 -14.47953 -13.96003 -13.92727 -13.88010 -13.48915 -13.44975 -13.15653 -12.99385 -12.86717 -12.85356 -12.68815 -12.59226 -12.41390 -12.07739 -11.79115 -11.73654 -11.35429 -11.31430 -11.11806 -11.05904 -10.98208 -10.27068 -10.26485 -9.38957 -8.65253 -8.33576 -6.11230 0.42380 1.26799 1.44470 1.47338 1.56154 1.57272 1.62486 1.73303 2.19130 2.28532 2.64478 2.95678 3.01079 3.28999 3.43442 3.52464 3.65988 3.84772 3.91305 4.06662 4.11117 4.23398 4.30360 4.36577 4.48482 4.49809 4.63731 4.66583 4.72357 4.77427 4.83280 4.93489 4.97109 5.05324 5.12165 5.15665 5.29070 5.42599 5.43099 5.69833 5.90574 5.92194 6.20597 6.31754 6.34152 6.76879 7.08284 7.15983 8.75156 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.011084 B = 0.003161 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.469107 B = 8856.061180 C =10686.322159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.070 3.930 3 H 0.096 0.904 4 C 0.087 3.913 5 N -0.716 5.716 6 C 0.535 3.465 7 O -0.558 6.558 8 C -0.132 4.132 9 S -0.146 6.146 10 C -0.547 4.547 11 H 0.084 0.916 12 C 0.016 3.984 13 N -0.911 5.911 14 Si 0.994 3.006 15 H -0.260 1.260 16 H -0.281 1.281 17 H -0.264 1.264 18 N -0.513 5.513 19 C 0.013 3.987 20 C 0.053 3.947 21 H 0.091 0.909 22 C -0.116 4.116 23 C -0.139 4.139 24 C 0.529 3.471 25 O -0.542 6.542 26 N -0.669 5.669 27 C 0.536 3.464 28 O -0.510 6.510 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.404 0.596 35 H 0.116 0.884 36 H 0.105 0.895 37 H 0.271 0.729 38 H 0.030 0.970 39 H 0.096 0.904 40 H 0.078 0.922 41 H 0.097 0.903 42 H 0.117 0.883 43 H 0.136 0.864 44 H 0.130 0.870 45 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.205 6.751 20.233 24.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.039 4.039 3 H 0.114 0.886 4 C -0.038 4.038 5 N -0.374 5.374 6 C 0.321 3.679 7 O -0.435 6.435 8 C -0.284 4.284 9 S 0.081 5.919 10 C -0.694 4.694 11 H 0.102 0.898 12 C -0.189 4.189 13 N -0.547 5.547 14 Si 0.816 3.184 15 H -0.184 1.184 16 H -0.206 1.206 17 H -0.189 1.189 18 N -0.238 5.238 19 C -0.134 4.134 20 C -0.059 4.059 21 H 0.108 0.892 22 C -0.153 4.153 23 C -0.179 4.179 24 C 0.320 3.680 25 O -0.417 6.417 26 N -0.334 5.334 27 C 0.325 3.675 28 O -0.383 6.383 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.244 0.756 35 H 0.134 0.866 36 H 0.123 0.877 37 H 0.080 0.920 38 H 0.049 0.951 39 H 0.114 0.886 40 H 0.097 0.903 41 H 0.115 0.885 42 H 0.136 0.864 43 H 0.154 0.846 44 H 0.148 0.852 45 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -13.584 5.912 19.365 24.382 hybrid contribution 2.277 1.639 0.181 2.812 sum -11.307 7.551 19.546 23.810 Atomic orbital electron populations 1.21568 0.91776 1.02493 1.02515 1.22188 0.98012 0.98399 0.85310 0.88602 1.22307 0.79244 1.02534 0.99726 1.46189 1.08084 1.47071 1.36070 1.20092 0.88774 0.79175 0.79848 1.90707 1.71288 1.39388 1.42165 1.23398 0.94594 1.05343 1.05029 1.85612 1.05752 1.57953 1.42609 1.23173 0.91954 1.31888 1.22425 0.89814 1.26068 1.04897 0.94051 0.93854 1.70171 1.37252 1.28072 1.19242 0.85063 0.76062 0.78678 0.78587 1.18421 1.20618 1.18903 1.62115 1.22613 1.05250 1.33789 1.22675 1.02326 0.85959 1.02434 1.22007 0.93056 0.91114 0.99691 0.89180 1.21971 0.95428 0.99817 0.98124 1.22071 1.00254 0.89623 1.05911 1.21582 0.77339 0.89234 0.79855 1.90798 1.46996 1.73405 1.30495 1.44854 1.31088 1.20243 1.37222 1.20990 0.79490 0.89524 0.77521 1.90739 1.31206 1.58585 1.57742 0.91617 0.91624 0.91896 0.91971 0.90321 0.75607 0.86580 0.87681 0.92035 0.95106 0.88558 0.90333 0.88454 0.86448 0.84600 0.85171 0.74674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.82 9.37 71.98 0.67 -1.15 16 2 C 0.07 1.12 1.99 44.91 0.09 1.21 16 3 H 0.10 1.77 5.64 -2.39 -0.01 1.76 16 4 C 0.09 1.76 4.39 86.38 0.38 2.13 16 5 N -0.72 -15.99 4.42 -463.06 -2.05 -18.03 16 6 C 0.54 17.85 7.85 87.66 0.69 18.54 16 7 O -0.56 -24.04 15.82 -3.02 -0.05 -24.08 16 8 C -0.13 -4.77 6.16 71.24 0.44 -4.33 16 9 S -0.15 -7.72 20.57 -56.49 -1.16 -8.89 16 10 C -0.55 -29.87 9.50 67.96 0.65 -29.23 16 11 H 0.08 4.20 7.80 -2.91 -0.02 4.18 16 12 C 0.02 0.90 5.49 84.86 0.47 1.36 16 13 N -0.91 -54.55 13.22 21.65 0.29 -54.26 16 14 Si 0.99 42.14 29.55 68.60 2.03 44.17 16 15 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 16 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 17 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 18 N -0.51 -6.84 4.38 -875.93 -3.84 -10.67 16 19 C 0.01 0.16 7.18 127.69 0.92 1.08 16 20 C 0.05 0.61 2.09 44.22 0.09 0.70 16 21 H 0.09 0.99 4.58 -2.38 -0.01 0.98 16 22 C -0.12 -0.75 4.37 30.76 0.13 -0.61 16 23 C -0.14 -0.97 6.07 29.89 0.18 -0.79 16 24 C 0.53 7.29 7.74 87.72 0.68 7.97 16 25 O -0.54 -11.77 17.87 -2.86 -0.05 -11.82 16 26 N -0.67 -8.83 5.09 -428.64 -2.18 -11.01 16 27 C 0.54 7.92 7.49 87.72 0.66 8.57 16 28 O -0.51 -10.49 14.94 -2.89 -0.04 -10.54 16 29 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.06 0.90 8.14 -2.39 -0.02 0.89 16 31 H 0.06 0.83 7.48 -2.39 -0.02 0.81 16 32 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.08 1.71 5.91 -2.38 -0.01 1.70 16 34 H 0.40 6.84 5.50 -92.71 -0.51 6.33 16 35 H 0.12 3.53 8.14 -2.40 -0.02 3.51 16 36 H 0.10 3.47 8.14 -2.40 -0.02 3.45 16 37 H 0.27 15.13 8.31 -92.70 -0.77 14.36 16 38 H 0.03 0.48 6.27 -2.39 -0.01 0.47 16 39 H 0.10 0.77 6.55 -2.39 -0.02 0.75 16 40 H 0.08 0.97 7.02 -2.39 -0.02 0.95 16 41 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 42 H 0.12 0.51 6.75 -2.39 -0.02 0.50 16 43 H 0.14 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.13 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.41 5.28 8.79 -92.70 -0.81 4.47 16 Total: -1.00 -79.76 372.62 -1.29 -81.05 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: -0.27 Total: 18.64 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: 6.04 Total: 5.45 kcal Atomic # 7 Polarization: -86.20 SS G_CDS: -7.78 Total: -93.98 kcal Atomic # 8 Polarization: -46.30 SS G_CDS: -0.14 Total: -46.44 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Atomic # 16 Polarization: -7.72 SS G_CDS: -1.16 Total: -8.89 kcal Total: -79.76 -1.29 -81.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329384712.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.439 kcal (2) G-P(sol) polarization free energy of solvation -79.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds