Wall clock time and date at job start Wed Apr 1 2020 02:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.46886 * 2 1 4 4 C 1.53004 * 109.46966 * 120.00113 * 2 1 3 5 5 N 1.46499 * 109.47040 * 192.24501 * 4 2 1 6 6 C 1.34767 * 119.99890 * 193.09053 * 5 4 2 7 7 O 1.21279 * 120.00174 * 0.02562 * 6 5 4 8 8 C 1.50706 * 120.00058 * 179.97438 * 6 5 4 9 9 S 1.81001 * 109.47052 * 180.02562 * 8 6 5 10 10 C 1.76206 * 99.99858 * 180.02562 * 9 8 6 11 11 H 1.08004 * 119.99491 * 0.02562 * 10 9 8 12 12 C 1.38792 * 119.99888 * 179.97438 * 10 9 8 13 13 N 1.31630 * 120.00484 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99845 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47072 * 180.02562 * 14 12 10 16 16 H 1.48498 * 109.47100 * 300.00137 * 14 12 10 17 17 H 1.48500 * 109.46992 * 60.00031 * 14 12 10 18 18 N 1.46896 * 109.46963 * 240.00068 * 2 1 3 19 19 C 1.46904 * 110.99761 * 286.87346 * 18 2 1 20 20 C 1.46902 * 111.00060 * 162.92528 * 18 2 1 21 21 H 1.08997 * 109.52546 * 48.18076 * 20 18 2 22 22 C 1.53238 * 109.52324 * 168.31668 * 20 18 2 23 23 C 1.53282 * 108.54717 * 175.46888 * 22 20 18 24 24 C 1.50581 * 109.20849 * 304.46392 * 23 22 20 25 25 O 1.21226 * 119.36493 * 209.05504 * 24 23 22 26 26 N 1.34148 * 121.27782 * 29.07798 * 24 23 22 27 27 C 1.34138 * 122.58714 * 359.43381 * 26 24 23 28 28 O 1.21232 * 119.35674 * 180.54362 * 27 26 24 29 29 H 1.09002 * 109.47439 * 295.57005 * 1 2 3 30 30 H 1.09002 * 109.47500 * 55.56285 * 1 2 3 31 31 H 1.08997 * 109.47723 * 175.56525 * 1 2 3 32 32 H 1.09000 * 109.46940 * 72.23929 * 4 2 1 33 33 H 1.09005 * 109.47103 * 312.24272 * 4 2 1 34 34 H 0.97001 * 119.99807 * 13.08919 * 5 4 2 35 35 H 1.08999 * 109.46841 * 59.99796 * 8 6 5 36 36 H 1.09001 * 109.46921 * 300.00225 * 8 6 5 37 37 H 0.97000 * 119.99179 * 359.97438 * 13 12 10 38 38 H 1.08999 * 109.47278 * 49.75167 * 19 18 2 39 39 H 1.09006 * 109.46830 * 169.74956 * 19 18 2 40 40 H 1.09002 * 109.47272 * 289.74864 * 19 18 2 41 41 H 1.09008 * 109.61847 * 295.23535 * 22 20 18 42 42 H 1.08995 * 109.62722 * 55.79064 * 22 20 18 43 43 H 1.09005 * 109.52953 * 184.52613 * 23 22 20 44 44 H 1.08997 * 109.46532 * 64.36770 * 23 22 20 45 45 H 0.97007 * 118.70213 * 179.45463 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.4753 -0.4728 1.4048 6 6 4.1965 -1.2095 2.2728 7 8 3.6573 -2.0785 2.9249 8 6 5.6732 -0.9544 2.4325 9 16 6.3535 -2.0967 3.6606 10 6 8.0413 -1.5904 3.6475 11 1 8.3593 -0.7882 2.9980 12 6 8.9616 -2.2219 4.4724 13 7 8.5739 -3.1993 5.2643 14 14 10.7510 -1.6857 4.4580 15 1 11.5230 -2.5115 5.4208 16 1 11.3102 -1.8641 3.0939 17 1 10.8423 -0.2555 4.8472 18 7 2.0196 -0.6925 -1.1994 19 6 1.8197 -2.1436 -1.0879 20 6 3.4311 -0.3734 -1.4522 21 1 4.0012 -0.4877 -0.5302 22 6 3.9874 -1.3221 -2.5193 23 6 5.4234 -0.8982 -2.8477 24 6 5.4302 0.5494 -3.2619 25 8 6.2771 0.9425 -4.0352 26 7 4.5175 1.4128 -2.7916 27 6 3.5462 1.0458 -1.9423 28 8 2.7457 1.8729 -1.5617 29 1 -0.3634 0.4436 0.9270 30 1 -0.3634 0.5811 -0.8476 31 1 -0.3634 -1.0245 -0.0795 32 1 1.8655 -1.7924 1.1470 33 1 1.5097 -0.3489 2.1258 34 1 3.9066 0.2219 0.8830 35 1 5.8308 0.0720 2.7638 36 1 6.1739 -1.1086 1.4767 37 1 7.6448 -3.4779 5.2715 38 1 0.7909 -2.3469 -0.7908 39 1 2.0192 -2.6129 -2.0514 40 1 2.5009 -2.5477 -0.3390 41 1 3.9844 -2.3435 -2.1385 42 1 3.3740 -1.2620 -3.4183 43 1 5.8072 -1.5121 -3.6626 44 1 6.0510 -1.0278 -1.9660 45 1 4.5616 2.3388 -3.0771 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329384715.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:38 Heat of formation + Delta-G solvation = -91.072881 kcal Electronic energy + Delta-G solvation = -28923.582988 eV Core-core repulsion = 24875.020805 eV Total energy + Delta-G solvation = -4048.562183 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.08540 -40.13199 -39.17924 -38.15569 -35.95166 -34.51053 -33.57788 -32.60014 -31.38795 -29.67384 -28.64464 -26.32364 -25.82998 -24.82612 -23.85030 -23.11217 -20.98923 -20.47940 -19.48356 -18.40799 -18.18945 -17.64553 -17.13739 -16.60446 -16.44946 -16.31231 -15.69364 -15.20618 -15.08833 -14.87347 -14.76264 -14.49757 -13.91175 -13.83301 -13.58741 -13.38151 -13.26850 -13.08308 -12.90033 -12.63359 -12.48365 -12.27546 -12.19769 -12.01360 -11.87718 -11.83285 -11.48068 -11.22740 -10.96965 -10.69348 -10.63173 -10.30813 -10.22006 -9.70367 -9.65412 -9.28493 -9.07605 -8.63150 -8.31454 -6.76232 -6.68844 -4.08106 1.09046 2.24305 2.35599 2.76725 2.81482 3.24073 3.30261 3.33456 3.42262 3.53572 3.55803 3.96105 4.10940 4.18288 4.33325 4.43039 4.58445 4.66575 4.83593 4.90263 4.97530 5.07080 5.11480 5.15838 5.20418 5.24119 5.31759 5.36815 5.39699 5.47033 5.54826 5.59298 5.62094 5.64523 5.84862 5.86168 5.93718 6.27025 6.34755 6.53218 6.55003 6.95970 7.35487 7.41594 7.84252 8.31965 8.43161 9.19686 10.74943 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.010833 B = 0.003390 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2583.961717 B = 8256.512982 C =10025.634143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.054 3.946 3 H 0.114 0.886 4 C 0.080 3.920 5 N -0.740 5.740 6 C 0.528 3.472 7 O -0.511 6.511 8 C -0.134 4.134 9 S -0.111 6.111 10 C -0.610 4.610 11 H 0.066 0.934 12 C 0.037 3.963 13 N -0.882 5.882 14 Si 1.083 2.917 15 H -0.277 1.277 16 H -0.285 1.285 17 H -0.285 1.285 18 N -0.511 5.511 19 C 0.010 3.990 20 C 0.043 3.957 21 H 0.103 0.897 22 C -0.122 4.122 23 C -0.145 4.145 24 C 0.525 3.475 25 O -0.501 6.501 26 N -0.673 5.673 27 C 0.532 3.468 28 O -0.485 6.485 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.393 0.607 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.278 0.722 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.042 0.958 41 H 0.101 0.899 42 H 0.089 0.911 43 H 0.121 0.879 44 H 0.117 0.883 45 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.009 6.028 -18.208 23.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.055 4.055 3 H 0.132 0.868 4 C -0.046 4.046 5 N -0.398 5.398 6 C 0.314 3.686 7 O -0.384 6.384 8 C -0.285 4.285 9 S 0.115 5.885 10 C -0.758 4.758 11 H 0.084 0.916 12 C -0.174 4.174 13 N -0.516 5.516 14 Si 0.908 3.092 15 H -0.202 1.202 16 H -0.211 1.211 17 H -0.211 1.211 18 N -0.236 5.236 19 C -0.137 4.137 20 C -0.069 4.069 21 H 0.120 0.880 22 C -0.159 4.159 23 C -0.185 4.185 24 C 0.314 3.686 25 O -0.374 6.374 26 N -0.339 5.339 27 C 0.319 3.681 28 O -0.356 6.356 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.102 0.898 33 H 0.088 0.912 34 H 0.230 0.770 35 H 0.111 0.889 36 H 0.108 0.892 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.061 0.939 41 H 0.119 0.881 42 H 0.108 0.892 43 H 0.139 0.861 44 H 0.135 0.865 45 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -13.730 4.831 -16.958 22.348 hybrid contribution -0.043 2.012 -1.155 2.321 sum -13.773 6.844 -18.113 23.762 Atomic orbital electron populations 1.21670 0.92570 1.02385 1.02476 1.22401 0.97267 0.99947 0.85842 0.86844 1.22267 0.81052 1.02282 0.98957 1.46412 1.09487 1.39399 1.44486 1.20359 0.88685 0.80993 0.78592 1.90714 1.72200 1.31630 1.43888 1.23346 0.93711 1.05902 1.05531 1.84845 1.08356 1.45333 1.49988 1.23694 0.93148 1.26344 1.32573 0.91621 1.26044 1.05659 0.93723 0.91930 1.70813 1.20218 1.25322 1.35269 0.83346 0.73206 0.75974 0.76626 1.20213 1.21080 1.21107 1.62125 1.14016 1.09487 1.37925 1.22629 1.02590 0.86539 1.01938 1.22108 0.92949 0.91087 1.00775 0.88036 1.21941 0.94353 1.00482 0.99158 1.22001 0.99261 0.91207 1.06053 1.21041 0.79352 0.89129 0.79073 1.90808 1.35114 1.79215 1.32225 1.44856 1.29303 1.15267 1.44491 1.20795 0.79057 0.91273 0.76933 1.90710 1.38521 1.52880 1.53473 0.91789 0.91333 0.92333 0.89838 0.91230 0.77047 0.88946 0.89204 0.91004 0.90246 0.90584 0.93900 0.88095 0.89250 0.86079 0.86514 0.74703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.00 9.31 37.16 0.35 -0.65 16 2 C 0.05 0.47 2.17 -67.71 -0.15 0.32 16 3 H 0.11 1.15 5.42 -51.93 -0.28 0.86 16 4 C 0.08 0.85 4.80 -4.04 -0.02 0.83 16 5 N -0.74 -8.96 4.08 -60.29 -0.25 -9.21 16 6 C 0.53 9.02 7.85 -10.99 -0.09 8.93 16 7 O -0.51 -10.76 15.74 5.56 0.09 -10.67 16 8 C -0.13 -2.53 6.16 36.01 0.22 -2.31 16 9 S -0.11 -2.88 19.60 -107.50 -2.11 -4.99 16 10 C -0.61 -17.05 9.50 30.94 0.29 -16.76 16 11 H 0.07 1.76 7.80 -52.48 -0.41 1.35 16 12 C 0.04 1.06 5.49 -17.43 -0.10 0.96 16 13 N -0.88 -26.89 13.67 55.49 0.76 -26.13 16 14 Si 1.08 24.40 29.92 -169.99 -5.09 19.31 16 15 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 16 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 17 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 18 N -0.51 -4.04 4.44 -228.21 -1.01 -5.06 16 19 C 0.01 0.07 7.24 60.07 0.44 0.51 16 20 C 0.04 0.32 1.95 -68.79 -0.13 0.19 16 21 H 0.10 0.84 4.36 -51.93 -0.23 0.61 16 22 C -0.12 -0.67 4.38 -26.46 -0.12 -0.79 16 23 C -0.15 -0.86 6.07 -27.79 -0.17 -1.03 16 24 C 0.53 4.48 7.74 -11.32 -0.09 4.39 16 25 O -0.50 -6.06 17.87 5.60 0.10 -5.96 16 26 N -0.67 -5.31 5.09 -11.75 -0.06 -5.37 16 27 C 0.53 4.64 7.53 -11.33 -0.09 4.55 16 28 O -0.48 -5.39 14.82 5.60 0.08 -5.31 16 29 H 0.06 0.45 8.10 -51.93 -0.42 0.02 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.40 6.52 -51.93 -0.34 0.06 16 32 H 0.08 0.95 5.60 -51.93 -0.29 0.66 16 33 H 0.07 0.78 8.06 -51.93 -0.42 0.36 16 34 H 0.39 4.02 6.48 -40.82 -0.26 3.75 16 35 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 36 H 0.09 1.51 8.14 -51.91 -0.42 1.09 16 37 H 0.28 8.62 7.12 -40.82 -0.29 8.33 16 38 H 0.08 0.52 6.40 -51.93 -0.33 0.18 16 39 H 0.08 0.42 6.75 -51.93 -0.35 0.06 16 40 H 0.04 0.37 6.62 -51.93 -0.34 0.02 16 41 H 0.10 0.48 6.81 -51.92 -0.35 0.13 16 42 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.12 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.12 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.41 3.00 8.79 -40.82 -0.36 2.64 16 LS Contribution 370.45 15.07 5.58 5.58 Total: -1.00 -36.34 370.45 -7.56 -43.90 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -6.01 Total: 4.73 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: 0.36 Total: -0.84 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: -0.56 Total: -45.76 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: 0.27 Total: -21.94 kcal Atomic # 14 Polarization: 24.40 SS G_CDS: -5.09 Total: 19.31 kcal Atomic # 16 Polarization: -2.88 SS G_CDS: -2.11 Total: -4.99 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.34 -7.56 -43.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329384715.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.172 kcal (2) G-P(sol) polarization free energy of solvation -36.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds