Wall clock time and date at job start Wed Apr 1 2020 02:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.46886 * 2 1 4 4 C 1.53004 * 109.46966 * 120.00113 * 2 1 3 5 5 N 1.46499 * 109.47040 * 192.24501 * 4 2 1 6 6 C 1.34767 * 119.99890 * 193.09053 * 5 4 2 7 7 O 1.21279 * 120.00174 * 0.02562 * 6 5 4 8 8 C 1.50706 * 120.00058 * 179.97438 * 6 5 4 9 9 S 1.81001 * 109.47052 * 180.02562 * 8 6 5 10 10 C 1.76206 * 99.99858 * 180.02562 * 9 8 6 11 11 H 1.08004 * 119.99491 * 0.02562 * 10 9 8 12 12 C 1.38792 * 119.99888 * 179.97438 * 10 9 8 13 13 N 1.31630 * 120.00484 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99845 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47072 * 180.02562 * 14 12 10 16 16 H 1.48498 * 109.47100 * 300.00137 * 14 12 10 17 17 H 1.48500 * 109.46992 * 60.00031 * 14 12 10 18 18 N 1.46896 * 109.46963 * 240.00068 * 2 1 3 19 19 C 1.46904 * 110.99761 * 286.87346 * 18 2 1 20 20 C 1.46902 * 111.00060 * 162.92528 * 18 2 1 21 21 H 1.08997 * 109.52546 * 48.18076 * 20 18 2 22 22 C 1.53238 * 109.52324 * 168.31668 * 20 18 2 23 23 C 1.53282 * 108.54717 * 175.46888 * 22 20 18 24 24 C 1.50581 * 109.20849 * 304.46392 * 23 22 20 25 25 O 1.21226 * 119.36493 * 209.05504 * 24 23 22 26 26 N 1.34148 * 121.27782 * 29.07798 * 24 23 22 27 27 C 1.34138 * 122.58714 * 359.43381 * 26 24 23 28 28 O 1.21232 * 119.35674 * 180.54362 * 27 26 24 29 29 H 1.09002 * 109.47439 * 295.57005 * 1 2 3 30 30 H 1.09002 * 109.47500 * 55.56285 * 1 2 3 31 31 H 1.08997 * 109.47723 * 175.56525 * 1 2 3 32 32 H 1.09000 * 109.46940 * 72.23929 * 4 2 1 33 33 H 1.09005 * 109.47103 * 312.24272 * 4 2 1 34 34 H 0.97001 * 119.99807 * 13.08919 * 5 4 2 35 35 H 1.08999 * 109.46841 * 59.99796 * 8 6 5 36 36 H 1.09001 * 109.46921 * 300.00225 * 8 6 5 37 37 H 0.97000 * 119.99179 * 359.97438 * 13 12 10 38 38 H 1.08999 * 109.47278 * 49.75167 * 19 18 2 39 39 H 1.09006 * 109.46830 * 169.74956 * 19 18 2 40 40 H 1.09002 * 109.47272 * 289.74864 * 19 18 2 41 41 H 1.09008 * 109.61847 * 295.23535 * 22 20 18 42 42 H 1.08995 * 109.62722 * 55.79064 * 22 20 18 43 43 H 1.09005 * 109.52953 * 184.52613 * 23 22 20 44 44 H 1.08997 * 109.46532 * 64.36770 * 23 22 20 45 45 H 0.97007 * 118.70213 * 179.45463 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.4753 -0.4728 1.4048 6 6 4.1965 -1.2095 2.2728 7 8 3.6573 -2.0785 2.9249 8 6 5.6732 -0.9544 2.4325 9 16 6.3535 -2.0967 3.6606 10 6 8.0413 -1.5904 3.6475 11 1 8.3593 -0.7882 2.9980 12 6 8.9616 -2.2219 4.4724 13 7 8.5739 -3.1993 5.2643 14 14 10.7510 -1.6857 4.4580 15 1 11.5230 -2.5115 5.4208 16 1 11.3102 -1.8641 3.0939 17 1 10.8423 -0.2555 4.8472 18 7 2.0196 -0.6925 -1.1994 19 6 1.8197 -2.1436 -1.0879 20 6 3.4311 -0.3734 -1.4522 21 1 4.0012 -0.4877 -0.5302 22 6 3.9874 -1.3221 -2.5193 23 6 5.4234 -0.8982 -2.8477 24 6 5.4302 0.5494 -3.2619 25 8 6.2771 0.9425 -4.0352 26 7 4.5175 1.4128 -2.7916 27 6 3.5462 1.0458 -1.9423 28 8 2.7457 1.8729 -1.5617 29 1 -0.3634 0.4436 0.9270 30 1 -0.3634 0.5811 -0.8476 31 1 -0.3634 -1.0245 -0.0795 32 1 1.8655 -1.7924 1.1470 33 1 1.5097 -0.3489 2.1258 34 1 3.9066 0.2219 0.8830 35 1 5.8308 0.0720 2.7638 36 1 6.1739 -1.1086 1.4767 37 1 7.6448 -3.4779 5.2715 38 1 0.7909 -2.3469 -0.7908 39 1 2.0192 -2.6129 -2.0514 40 1 2.5009 -2.5477 -0.3390 41 1 3.9844 -2.3435 -2.1385 42 1 3.3740 -1.2620 -3.4183 43 1 5.8072 -1.5121 -3.6626 44 1 6.0510 -1.0278 -1.9660 45 1 4.5616 2.3388 -3.0771 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329384715.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:37 Heat of formation + Delta-G solvation = -120.242374 kcal Electronic energy + Delta-G solvation = -28924.847872 eV Core-core repulsion = 24875.020805 eV Total energy + Delta-G solvation = -4049.827067 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.78124 -41.13736 -40.15021 -39.03602 -36.68514 -35.48309 -34.74999 -34.39518 -32.12288 -31.01639 -29.26042 -27.28654 -26.89477 -26.53291 -24.45620 -23.77057 -22.12235 -21.34485 -20.49135 -20.06055 -18.89071 -18.46213 -17.93405 -17.81226 -17.55039 -17.16178 -16.58498 -16.37134 -16.09975 -15.80845 -15.69381 -15.57275 -15.54475 -14.99806 -14.56348 -14.48507 -14.10273 -13.99904 -13.92809 -13.91098 -13.56742 -13.55033 -13.01158 -12.83869 -12.74180 -12.72599 -12.46973 -12.09685 -11.96296 -11.86803 -11.56388 -11.39264 -11.35580 -11.18230 -11.09910 -10.99171 -10.35099 -10.33099 -9.37375 -8.91740 -8.86772 -6.27377 0.38452 1.16222 1.42619 1.52387 1.59302 1.60177 1.69914 1.80315 2.07975 2.33785 2.62215 2.92694 3.02729 3.11241 3.41159 3.50486 3.63051 3.77528 3.87600 3.98193 4.06517 4.09756 4.20865 4.30886 4.32390 4.44493 4.58671 4.62160 4.70939 4.72333 4.78246 4.89775 4.93311 5.00120 5.06696 5.17247 5.20724 5.36334 5.64390 5.66315 5.87540 5.90107 6.15657 6.20406 6.28801 6.73455 7.01892 7.06249 8.51813 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.010833 B = 0.003390 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2583.961717 B = 8256.512982 C =10025.634143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.063 3.937 3 H 0.104 0.896 4 C 0.081 3.919 5 N -0.715 5.715 6 C 0.534 3.466 7 O -0.555 6.555 8 C -0.114 4.114 9 S -0.186 6.186 10 C -0.614 4.614 11 H 0.075 0.925 12 C -0.016 4.016 13 N -0.913 5.913 14 Si 1.133 2.867 15 H -0.281 1.281 16 H -0.262 1.262 17 H -0.266 1.266 18 N -0.511 5.511 19 C 0.011 3.989 20 C 0.043 3.957 21 H 0.097 0.903 22 C -0.114 4.114 23 C -0.140 4.140 24 C 0.529 3.471 25 O -0.540 6.540 26 N -0.669 5.669 27 C 0.536 3.464 28 O -0.509 6.509 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.406 0.594 35 H 0.106 0.894 36 H 0.116 0.884 37 H 0.261 0.739 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.027 0.973 41 H 0.115 0.885 42 H 0.098 0.902 43 H 0.137 0.863 44 H 0.124 0.876 45 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.988 6.717 -20.050 25.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.046 4.046 3 H 0.122 0.878 4 C -0.044 4.044 5 N -0.371 5.371 6 C 0.320 3.680 7 O -0.432 6.432 8 C -0.266 4.266 9 S 0.040 5.960 10 C -0.762 4.762 11 H 0.093 0.907 12 C -0.219 4.219 13 N -0.548 5.548 14 Si 0.951 3.049 15 H -0.206 1.206 16 H -0.186 1.186 17 H -0.191 1.191 18 N -0.235 5.235 19 C -0.136 4.136 20 C -0.070 4.070 21 H 0.114 0.886 22 C -0.152 4.152 23 C -0.180 4.180 24 C 0.320 3.680 25 O -0.415 6.415 26 N -0.334 5.334 27 C 0.325 3.675 28 O -0.382 6.382 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.084 0.916 34 H 0.245 0.755 35 H 0.124 0.876 36 H 0.134 0.866 37 H 0.072 0.928 38 H 0.103 0.897 39 H 0.114 0.886 40 H 0.046 0.954 41 H 0.133 0.867 42 H 0.117 0.883 43 H 0.155 0.845 44 H 0.142 0.858 45 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -13.750 5.556 -18.848 23.983 hybrid contribution -0.185 1.879 -0.674 2.005 sum -13.935 7.436 -19.522 25.111 Atomic orbital electron populations 1.21650 0.91423 1.03007 1.02680 1.22319 0.98075 0.99086 0.85134 0.87846 1.22418 0.79559 1.02456 0.99928 1.46186 1.10011 1.38250 1.42641 1.20019 0.88037 0.80986 0.78944 1.90709 1.72688 1.33835 1.46016 1.23265 0.94938 1.04211 1.04174 1.85056 1.08738 1.48582 1.53584 1.24027 0.93859 1.26111 1.32204 0.90726 1.27719 1.10092 0.93001 0.91112 1.70928 1.19319 1.27295 1.37277 0.82757 0.68062 0.76407 0.77712 1.20627 1.18645 1.19089 1.62156 1.14182 1.10062 1.37123 1.22690 1.02604 0.85714 1.02621 1.22150 0.92809 0.90844 1.01150 0.88641 1.21953 0.93960 1.00462 0.98812 1.22069 0.99739 0.89339 1.06861 1.21528 0.78396 0.90038 0.78025 1.90799 1.36631 1.79988 1.34069 1.44845 1.28979 1.15484 1.44050 1.21009 0.78552 0.91510 0.76437 1.90709 1.39456 1.53654 1.54389 0.91351 0.91452 0.91444 0.90148 0.91596 0.75548 0.87598 0.86581 0.92782 0.89699 0.88591 0.95394 0.86717 0.88309 0.84511 0.85790 0.74578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.70 9.31 71.98 0.67 -1.03 16 2 C 0.06 0.98 2.17 44.92 0.10 1.08 16 3 H 0.10 1.92 5.42 -2.39 -0.01 1.91 16 4 C 0.08 1.61 4.80 86.38 0.41 2.02 16 5 N -0.71 -16.08 4.08 -463.06 -1.89 -17.98 16 6 C 0.53 17.70 7.85 87.66 0.69 18.39 16 7 O -0.56 -23.44 15.74 -3.03 -0.05 -23.49 16 8 C -0.11 -4.17 6.16 71.24 0.44 -3.73 16 9 S -0.19 -9.75 19.60 -56.49 -1.11 -10.85 16 10 C -0.61 -34.14 9.50 67.95 0.65 -33.49 16 11 H 0.07 3.88 7.80 -2.91 -0.02 3.85 16 12 C -0.02 -0.89 5.49 84.86 0.47 -0.42 16 13 N -0.91 -56.65 13.67 21.65 0.30 -56.35 16 14 Si 1.13 48.05 29.92 68.60 2.05 50.10 16 15 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 16 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 17 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 18 N -0.51 -6.91 4.44 -875.92 -3.89 -10.80 16 19 C 0.01 0.12 7.24 127.69 0.92 1.05 16 20 C 0.04 0.54 1.95 44.21 0.09 0.63 16 21 H 0.10 1.33 4.36 -2.39 -0.01 1.32 16 22 C -0.11 -0.91 4.38 30.77 0.13 -0.78 16 23 C -0.14 -1.29 6.07 29.91 0.18 -1.11 16 24 C 0.53 8.16 7.74 87.72 0.68 8.84 16 25 O -0.54 -12.53 17.87 -2.86 -0.05 -12.59 16 26 N -0.67 -9.61 5.09 -428.63 -2.18 -11.79 16 27 C 0.54 8.41 7.53 87.72 0.66 9.07 16 28 O -0.51 -10.63 14.82 -2.88 -0.04 -10.67 16 29 H 0.07 0.84 8.10 -2.39 -0.02 0.82 16 30 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.07 0.77 6.52 -2.39 -0.02 0.75 16 32 H 0.08 1.72 5.60 -2.39 -0.01 1.71 16 33 H 0.07 1.40 8.06 -2.38 -0.02 1.38 16 34 H 0.41 7.38 6.48 -92.71 -0.60 6.77 16 35 H 0.11 3.60 8.14 -2.40 -0.02 3.58 16 36 H 0.12 3.62 8.14 -2.39 -0.02 3.60 16 37 H 0.26 16.80 7.12 -92.71 -0.66 16.14 16 38 H 0.08 0.90 6.40 -2.39 -0.02 0.88 16 39 H 0.10 0.73 6.75 -2.38 -0.02 0.71 16 40 H 0.03 0.42 6.62 -2.39 -0.02 0.40 16 41 H 0.11 0.69 6.81 -2.38 -0.02 0.68 16 42 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.14 0.90 8.14 -2.38 -0.02 0.88 16 44 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.41 5.68 8.79 -92.70 -0.81 4.86 16 Total: -1.00 -80.37 370.45 -1.03 -81.39 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: -0.25 Total: 22.49 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: 6.09 Total: 0.53 kcal Atomic # 7 Polarization: -89.25 SS G_CDS: -7.67 Total: -96.92 kcal Atomic # 8 Polarization: -46.60 SS G_CDS: -0.14 Total: -46.75 kcal Atomic # 14 Polarization: 48.05 SS G_CDS: 2.05 Total: 50.10 kcal Atomic # 16 Polarization: -9.75 SS G_CDS: -1.11 Total: -10.85 kcal Total: -80.37 -1.03 -81.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329384715.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.848 kcal (2) G-P(sol) polarization free energy of solvation -80.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds