Wall clock time and date at job start Wed Apr 1 2020 02:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47204 * 2 1 4 4 N 1.28723 * 125.87078 * 269.97700 * 3 2 1 5 5 N 1.28634 * 110.17599 * 179.74106 * 4 3 2 6 6 C 1.33769 * 108.89091 * 0.44932 * 5 4 3 7 7 C 1.35311 * 125.86823 * 89.99512 * 3 2 1 8 8 C 1.50697 * 126.91271 * 359.94902 * 7 3 2 9 9 N 1.46494 * 109.47340 * 275.01335 * 8 7 3 10 10 C 1.34778 * 120.00241 * 179.97438 * 9 8 7 11 11 O 1.21353 * 119.99941 * 0.02562 * 10 9 8 12 12 C 1.49360 * 120.00013 * 180.02562 * 10 9 8 13 13 O 1.21374 * 119.99762 * 0.02562 * 12 10 9 14 14 N 1.34778 * 119.99627 * 180.02562 * 12 10 9 15 15 C 1.39740 * 119.99572 * 174.89207 * 14 12 10 16 16 C 1.39344 * 119.95209 * 145.76565 * 15 14 12 17 17 C 1.38475 * 120.42497 * 179.97438 * 16 15 14 18 18 C 1.37697 * 120.32610 * 359.97057 * 17 16 15 19 19 C 1.40746 * 119.89687 * 0.02758 * 18 17 16 20 20 C 1.41409 * 120.20647 * 179.97438 * 19 18 17 21 21 H 1.08007 * 120.00020 * 205.17863 * 20 19 18 22 22 C 1.39934 * 120.00066 * 25.17947 * 20 19 18 23 23 N 1.30830 * 119.99788 * 16.79403 * 22 20 19 24 24 Si 1.86803 * 120.00115 * 196.78974 * 22 20 19 25 25 H 1.48500 * 109.46819 * 89.99980 * 24 22 20 26 26 H 1.48494 * 109.47060 * 210.00281 * 24 22 20 27 27 H 1.48504 * 109.47220 * 330.00291 * 24 22 20 28 28 C 1.38306 * 119.95579 * 325.48984 * 15 14 12 29 29 H 1.08998 * 109.46940 * 60.00308 * 1 2 3 30 30 H 1.09003 * 109.47039 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47019 * 300.00143 * 1 2 3 32 32 H 1.09001 * 109.47641 * 240.00561 * 2 1 3 33 33 H 1.09001 * 109.47426 * 119.99754 * 2 1 3 34 34 H 1.07993 * 126.75592 * 179.82765 * 6 5 4 35 35 H 1.09007 * 109.47217 * 35.01957 * 8 7 3 36 36 H 1.09007 * 109.47075 * 155.01499 * 8 7 3 37 37 H 0.97001 * 119.99937 * 0.02562 * 9 8 7 38 38 H 0.96997 * 120.00043 * 354.88931 * 14 12 10 39 39 H 1.07997 * 119.78847 * 359.95307 * 16 15 14 40 40 H 1.07998 * 119.83780 * 179.97438 * 17 16 15 41 41 H 1.07995 * 120.05382 * 180.02562 * 18 17 16 42 42 H 0.97007 * 119.99550 * 179.97438 * 23 22 20 43 43 H 1.08003 * 120.15910 * 359.97438 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2701 2.0922 -1.0431 5 7 2.6777 3.2616 -0.6951 6 6 2.7078 3.3301 0.6405 7 6 2.2825 2.1287 1.0965 8 6 2.1327 1.7085 2.5359 9 7 0.7488 1.9233 2.9659 10 6 0.3788 1.6159 4.2249 11 8 1.1922 1.1616 5.0025 12 6 -1.0323 1.8343 4.6630 13 8 -1.8459 2.2882 3.8850 14 7 -1.4021 1.5274 5.9222 15 6 -2.6925 1.8301 6.3648 16 6 -3.3344 0.9850 7.2679 17 6 -4.6128 1.2758 7.7133 18 6 -5.2640 2.4047 7.2686 19 6 -4.6285 3.2677 6.3564 20 6 -5.2914 4.4285 5.8951 21 1 -5.0241 4.8602 4.9418 22 6 -6.2937 5.0179 6.6736 23 7 -6.3990 4.7160 7.9422 24 14 -7.4812 6.2359 5.9016 25 1 -8.6637 5.5082 5.3749 26 1 -7.9196 7.2171 6.9263 27 1 -6.8041 6.9505 4.7897 28 6 -3.3286 2.9710 5.9103 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.0079 4.1785 1.2374 35 1 2.3841 0.6524 2.6342 36 1 2.8028 2.3010 3.1590 37 1 0.0986 2.2860 2.3442 38 1 -0.7725 1.0963 6.5211 39 1 -2.8316 0.0974 7.6224 40 1 -5.1016 0.6141 8.4130 41 1 -6.2609 2.6275 7.6192 42 1 -7.0937 5.1249 8.4820 43 1 -2.8302 3.6293 5.2141 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331756253.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:12:11 Heat of formation + Delta-G solvation = 54.922680 kcal Electronic energy + Delta-G solvation = -28590.067737 eV Core-core repulsion = 24444.685196 eV Total energy + Delta-G solvation = -4145.382540 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.71851 -40.71926 -38.90262 -37.21388 -36.21335 -35.51242 -34.55372 -33.11784 -31.87144 -31.16273 -29.92518 -28.69377 -27.37717 -25.41215 -24.93589 -24.19297 -22.91553 -21.44403 -20.98268 -20.94355 -19.96042 -18.70546 -17.83099 -17.49867 -17.01624 -16.46248 -16.12418 -15.65821 -15.53421 -15.38992 -15.04285 -14.69731 -14.56405 -14.27777 -14.21186 -13.77362 -13.46728 -13.33601 -13.04842 -12.94313 -12.58173 -12.27747 -12.14910 -11.87377 -11.81680 -11.62702 -11.32061 -11.24531 -11.19278 -10.98132 -10.53702 -10.52139 -10.22239 -9.82761 -9.72373 -9.66111 -9.50370 -9.16345 -9.10319 -7.55351 -7.07013 -6.79248 -4.41767 0.98660 1.35797 1.86925 2.11467 2.46485 2.70387 2.84519 3.06182 3.10529 3.15544 3.43101 3.71706 3.73935 3.91606 3.95340 4.28378 4.30501 4.50586 4.56306 4.58571 4.61272 4.94294 4.97240 5.09837 5.15327 5.43115 5.57529 5.61273 5.74725 5.78910 6.11381 6.14684 6.29146 6.50263 6.68779 6.91041 6.92494 6.97296 7.16345 7.32304 7.57703 7.60063 7.83896 7.96709 8.01197 8.08332 8.10703 8.36356 8.58611 8.84746 8.88461 10.14643 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.013577 B = 0.002408 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.766542 B =11624.222165 C =12750.683291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.106 3.894 3 N -0.276 5.276 4 N -0.074 5.074 5 N -0.271 5.271 6 C -0.021 4.021 7 C -0.047 4.047 8 C 0.197 3.803 9 N -0.705 5.705 10 C 0.516 3.484 11 O -0.518 6.518 12 C 0.496 3.504 13 O -0.497 6.497 14 N -0.631 5.631 15 C 0.143 3.857 16 C -0.255 4.255 17 C -0.091 4.091 18 C -0.167 4.167 19 C 0.120 3.880 20 C -0.457 4.457 21 H 0.079 0.921 22 C 0.076 3.924 23 N -0.793 5.793 24 Si 0.910 3.090 25 H -0.267 1.267 26 H -0.278 1.278 27 H -0.262 1.262 28 C -0.208 4.208 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.110 0.890 33 H 0.105 0.895 34 H 0.194 0.806 35 H 0.087 0.913 36 H 0.105 0.895 37 H 0.416 0.584 38 H 0.411 0.589 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.121 0.879 42 H 0.281 0.719 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.132 -8.547 -9.498 19.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.015 4.015 3 N -0.072 5.072 4 N -0.053 5.053 5 N -0.136 5.136 6 C -0.180 4.180 7 C -0.179 4.179 8 C 0.072 3.928 9 N -0.361 5.361 10 C 0.297 3.703 11 O -0.393 6.393 12 C 0.276 3.724 13 O -0.371 6.371 14 N -0.276 5.276 15 C 0.052 3.948 16 C -0.276 4.276 17 C -0.111 4.111 18 C -0.187 4.187 19 C 0.116 3.884 20 C -0.487 4.487 21 H 0.097 0.903 22 C -0.142 4.142 23 N -0.418 5.418 24 Si 0.734 3.266 25 H -0.192 1.192 26 H -0.203 1.203 27 H -0.186 1.186 28 C -0.229 4.229 29 H 0.091 0.909 30 H 0.107 0.893 31 H 0.088 0.912 32 H 0.129 0.871 33 H 0.123 0.877 34 H 0.211 0.789 35 H 0.105 0.895 36 H 0.123 0.877 37 H 0.253 0.747 38 H 0.247 0.753 39 H 0.110 0.890 40 H 0.112 0.888 41 H 0.138 0.862 42 H 0.092 0.908 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 14.055 -8.449 -10.861 19.670 hybrid contribution -0.511 0.375 0.972 1.160 sum 13.544 -8.075 -9.890 18.613 Atomic orbital electron populations 1.22206 0.92282 1.04507 1.04128 1.22223 0.96894 0.76384 1.05999 1.47556 1.41723 1.13597 1.04311 1.78353 1.16236 0.99054 1.11697 1.75176 1.15903 1.10160 1.12320 1.23542 1.04605 0.97780 0.92027 1.22049 1.10301 0.94212 0.91304 1.19648 0.83916 1.02677 0.86553 1.45834 1.11779 1.65331 1.13142 1.20368 0.89266 0.78413 0.82233 1.90761 1.53135 1.42963 1.52463 1.19846 0.87870 0.81103 0.83558 1.90835 1.51937 1.42133 1.52244 1.43120 1.14328 1.58085 1.12034 1.17433 0.83035 0.95563 0.98784 1.20060 0.97813 1.01385 1.08357 1.20482 0.94105 0.97298 0.99170 1.21400 1.00716 0.94193 1.02393 1.17475 0.89390 0.91790 0.89708 1.19596 1.15578 1.08826 1.04683 0.90255 1.25914 0.97052 0.97061 0.94191 1.69820 1.28914 1.37384 1.05721 0.86284 0.80562 0.79868 0.79877 1.19223 1.20297 1.18551 1.20959 0.96447 0.97463 1.08079 0.90934 0.89276 0.91247 0.87136 0.87671 0.78906 0.89534 0.87653 0.74728 0.75330 0.88970 0.88776 0.86156 0.90812 0.87606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.02 10.24 37.16 0.38 -0.64 16 2 C 0.11 0.56 6.90 -4.04 -0.03 0.53 16 3 N -0.28 -2.37 3.34 -57.05 -0.19 -2.56 16 4 N -0.07 -0.85 13.17 60.35 0.79 -0.06 16 5 N -0.27 -3.31 12.41 30.23 0.38 -2.93 16 6 C -0.02 -0.19 11.99 -17.73 -0.21 -0.41 16 7 C -0.05 -0.38 6.36 -82.09 -0.52 -0.91 16 8 C 0.20 1.45 5.89 -5.20 -0.03 1.41 16 9 N -0.70 -6.96 5.52 -61.94 -0.34 -7.30 16 10 C 0.52 6.70 7.89 -11.63 -0.09 6.61 16 11 O -0.52 -7.28 16.48 5.49 0.09 -7.19 16 12 C 0.50 8.27 7.61 -11.63 -0.09 8.18 16 13 O -0.50 -9.71 14.23 5.48 0.08 -9.63 16 14 N -0.63 -11.07 5.32 -10.34 -0.05 -11.12 16 15 C 0.14 3.11 6.25 -83.82 -0.52 2.58 16 16 C -0.25 -5.40 9.97 -39.08 -0.39 -5.79 16 17 C -0.09 -2.05 10.02 -39.69 -0.40 -2.45 16 18 C -0.17 -4.24 8.69 -38.83 -0.34 -4.58 16 19 C 0.12 3.16 5.57 -106.85 -0.59 2.57 16 20 C -0.46 -12.13 9.05 -37.74 -0.34 -12.47 16 21 H 0.08 2.07 7.90 -52.48 -0.41 1.65 16 22 C 0.08 1.88 5.16 -17.34 -0.09 1.79 16 23 N -0.79 -20.10 10.94 55.55 0.61 -19.49 16 24 Si 0.91 18.59 29.59 -169.99 -5.03 13.56 16 25 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 26 H -0.28 -5.53 7.11 56.52 0.40 -5.12 16 27 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 28 C -0.21 -5.15 8.39 -38.67 -0.32 -5.47 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.52 7.89 -51.93 -0.41 0.11 16 32 H 0.11 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.11 0.36 7.23 -51.93 -0.38 -0.02 16 34 H 0.19 1.26 8.06 -52.49 -0.42 0.84 16 35 H 0.09 0.54 7.32 -51.93 -0.38 0.16 16 36 H 0.11 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.42 4.25 7.70 -40.82 -0.31 3.94 16 38 H 0.41 6.13 8.30 -40.82 -0.34 5.79 16 39 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 40 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 41 H 0.12 3.13 6.16 -52.49 -0.32 2.81 16 42 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 43 H 0.11 2.65 6.48 -52.48 -0.34 2.31 16 LS Contribution 376.30 15.07 5.67 5.67 Total: -1.00 -31.83 376.30 -6.58 -38.41 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -4.99 Total: 11.67 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -3.59 Total: -9.03 kcal Atomic # 7 Polarization: -44.65 SS G_CDS: 1.19 Total: -43.46 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: 0.17 Total: -16.82 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.83 -6.58 -38.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331756253.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.335 kcal (2) G-P(sol) polarization free energy of solvation -31.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds