Wall clock time and date at job start Wed Apr 1 2020 02:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47204 * 2 1 4 4 N 1.28723 * 125.87078 * 269.97700 * 3 2 1 5 5 N 1.28634 * 110.17599 * 179.74106 * 4 3 2 6 6 C 1.33769 * 108.89091 * 0.44932 * 5 4 3 7 7 C 1.35311 * 125.86823 * 89.99512 * 3 2 1 8 8 C 1.50697 * 126.91271 * 359.94902 * 7 3 2 9 9 N 1.46494 * 109.47340 * 275.01335 * 8 7 3 10 10 C 1.34778 * 120.00241 * 179.97438 * 9 8 7 11 11 O 1.21353 * 119.99941 * 0.02562 * 10 9 8 12 12 C 1.49360 * 120.00013 * 180.02562 * 10 9 8 13 13 O 1.21374 * 119.99762 * 0.02562 * 12 10 9 14 14 N 1.34778 * 119.99627 * 180.02562 * 12 10 9 15 15 C 1.39740 * 119.99572 * 174.89207 * 14 12 10 16 16 C 1.39344 * 119.95209 * 145.76565 * 15 14 12 17 17 C 1.38475 * 120.42497 * 179.97438 * 16 15 14 18 18 C 1.37697 * 120.32610 * 359.97057 * 17 16 15 19 19 C 1.40746 * 119.89687 * 0.02758 * 18 17 16 20 20 C 1.41409 * 120.20647 * 179.97438 * 19 18 17 21 21 H 1.08007 * 120.00020 * 205.17863 * 20 19 18 22 22 C 1.39934 * 120.00066 * 25.17947 * 20 19 18 23 23 N 1.30830 * 119.99788 * 16.79403 * 22 20 19 24 24 Si 1.86803 * 120.00115 * 196.78974 * 22 20 19 25 25 H 1.48500 * 109.46819 * 89.99980 * 24 22 20 26 26 H 1.48494 * 109.47060 * 210.00281 * 24 22 20 27 27 H 1.48504 * 109.47220 * 330.00291 * 24 22 20 28 28 C 1.38306 * 119.95579 * 325.48984 * 15 14 12 29 29 H 1.08998 * 109.46940 * 60.00308 * 1 2 3 30 30 H 1.09003 * 109.47039 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47019 * 300.00143 * 1 2 3 32 32 H 1.09001 * 109.47641 * 240.00561 * 2 1 3 33 33 H 1.09001 * 109.47426 * 119.99754 * 2 1 3 34 34 H 1.07993 * 126.75592 * 179.82765 * 6 5 4 35 35 H 1.09007 * 109.47217 * 35.01957 * 8 7 3 36 36 H 1.09007 * 109.47075 * 155.01499 * 8 7 3 37 37 H 0.97001 * 119.99937 * 0.02562 * 9 8 7 38 38 H 0.96997 * 120.00043 * 354.88931 * 14 12 10 39 39 H 1.07997 * 119.78847 * 359.95307 * 16 15 14 40 40 H 1.07998 * 119.83780 * 179.97438 * 17 16 15 41 41 H 1.07995 * 120.05382 * 180.02562 * 18 17 16 42 42 H 0.97007 * 119.99550 * 179.97438 * 23 22 20 43 43 H 1.08003 * 120.15910 * 359.97438 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2701 2.0922 -1.0431 5 7 2.6777 3.2616 -0.6951 6 6 2.7078 3.3301 0.6405 7 6 2.2825 2.1287 1.0965 8 6 2.1327 1.7085 2.5359 9 7 0.7488 1.9233 2.9659 10 6 0.3788 1.6159 4.2249 11 8 1.1922 1.1616 5.0025 12 6 -1.0323 1.8343 4.6630 13 8 -1.8459 2.2882 3.8850 14 7 -1.4021 1.5274 5.9222 15 6 -2.6925 1.8301 6.3648 16 6 -3.3344 0.9850 7.2679 17 6 -4.6128 1.2758 7.7133 18 6 -5.2640 2.4047 7.2686 19 6 -4.6285 3.2677 6.3564 20 6 -5.2914 4.4285 5.8951 21 1 -5.0241 4.8602 4.9418 22 6 -6.2937 5.0179 6.6736 23 7 -6.3990 4.7160 7.9422 24 14 -7.4812 6.2359 5.9016 25 1 -8.6637 5.5082 5.3749 26 1 -7.9196 7.2171 6.9263 27 1 -6.8041 6.9505 4.7897 28 6 -3.3286 2.9710 5.9103 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.0079 4.1785 1.2374 35 1 2.3841 0.6524 2.6342 36 1 2.8028 2.3010 3.1590 37 1 0.0986 2.2860 2.3442 38 1 -0.7725 1.0963 6.5211 39 1 -2.8316 0.0974 7.6224 40 1 -5.1016 0.6141 8.4130 41 1 -6.2609 2.6275 7.6192 42 1 -7.0937 5.1249 8.4820 43 1 -2.8302 3.6293 5.2141 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331756253.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:12:10 Heat of formation + Delta-G solvation = 32.218392 kcal Electronic energy + Delta-G solvation = -28591.052268 eV Core-core repulsion = 24444.685196 eV Total energy + Delta-G solvation = -4146.367072 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.42970 -41.97968 -40.22175 -38.87383 -37.03187 -36.44311 -35.96001 -34.83281 -32.66901 -31.78232 -31.75421 -30.33011 -28.28519 -27.28456 -25.64636 -25.28758 -23.61903 -23.02393 -22.60980 -21.65988 -21.29086 -20.02282 -19.31958 -18.32692 -18.03269 -17.44660 -17.40606 -17.12030 -16.67834 -16.47256 -16.46869 -16.08763 -15.54049 -15.43291 -15.03141 -14.86603 -14.69875 -14.54711 -14.13595 -13.97861 -13.89774 -13.56578 -13.09744 -13.07890 -13.02246 -12.89521 -12.82835 -12.70042 -12.42708 -12.19268 -11.95365 -11.90741 -11.54039 -11.24734 -11.18326 -10.93998 -10.75227 -10.49691 -10.34939 -9.42362 -8.83658 -8.63364 -6.37974 0.11423 0.26459 0.94831 1.04424 1.24179 1.32677 1.37725 1.49839 1.50523 1.55523 2.09872 2.20731 2.61615 2.72334 3.08195 3.33439 3.46047 3.70448 3.71245 3.85183 3.96635 4.18123 4.32871 4.41649 4.44550 4.58156 4.59940 4.65791 4.86235 4.88450 4.91935 5.06815 5.08444 5.09835 5.12051 5.12725 5.29226 5.49065 5.58701 5.76987 5.88363 6.05409 6.07403 6.28098 6.32205 6.61624 6.67256 6.88716 6.95813 7.01738 7.36579 8.32185 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.013577 B = 0.002408 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.766542 B =11624.222165 C =12750.683291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.098 3.902 3 N -0.269 5.269 4 N -0.102 5.102 5 N -0.309 5.309 6 C -0.028 4.028 7 C -0.039 4.039 8 C 0.200 3.800 9 N -0.689 5.689 10 C 0.532 3.468 11 O -0.524 6.524 12 C 0.494 3.506 13 O -0.529 6.529 14 N -0.627 5.627 15 C 0.151 3.849 16 C -0.245 4.245 17 C -0.090 4.090 18 C -0.194 4.194 19 C 0.090 3.910 20 C -0.499 4.499 21 H 0.066 0.934 22 C 0.039 3.961 23 N -0.821 5.821 24 Si 0.980 3.020 25 H -0.261 1.261 26 H -0.264 1.264 27 H -0.264 1.264 28 C -0.231 4.231 29 H 0.056 0.944 30 H 0.109 0.891 31 H 0.052 0.948 32 H 0.126 0.874 33 H 0.132 0.868 34 H 0.216 0.784 35 H 0.109 0.891 36 H 0.122 0.878 37 H 0.415 0.585 38 H 0.426 0.574 39 H 0.132 0.868 40 H 0.125 0.875 41 H 0.105 0.895 42 H 0.290 0.710 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.395 -10.159 -8.978 20.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.021 4.021 3 N -0.065 5.065 4 N -0.081 5.081 5 N -0.173 5.173 6 C -0.187 4.187 7 C -0.172 4.172 8 C 0.076 3.924 9 N -0.344 5.344 10 C 0.312 3.688 11 O -0.400 6.400 12 C 0.276 3.724 13 O -0.405 6.405 14 N -0.274 5.274 15 C 0.059 3.941 16 C -0.266 4.266 17 C -0.109 4.109 18 C -0.213 4.213 19 C 0.087 3.913 20 C -0.529 4.529 21 H 0.085 0.915 22 C -0.177 4.177 23 N -0.447 5.447 24 Si 0.801 3.199 25 H -0.185 1.185 26 H -0.188 1.188 27 H -0.188 1.188 28 C -0.253 4.253 29 H 0.075 0.925 30 H 0.127 0.873 31 H 0.072 0.928 32 H 0.144 0.856 33 H 0.150 0.850 34 H 0.232 0.768 35 H 0.127 0.873 36 H 0.140 0.860 37 H 0.252 0.748 38 H 0.265 0.735 39 H 0.150 0.850 40 H 0.143 0.857 41 H 0.123 0.877 42 H 0.100 0.900 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 15.368 -10.093 -10.368 21.108 hybrid contribution -0.787 0.738 0.801 1.344 sum 14.581 -9.355 -9.566 19.790 Atomic orbital electron populations 1.22183 0.92811 1.05313 1.02506 1.22586 0.96358 0.75056 1.08141 1.47851 1.40426 1.14355 1.03841 1.78293 1.17539 0.99433 1.12863 1.75132 1.17251 1.10901 1.13967 1.24027 1.04335 0.98972 0.91403 1.22147 1.09654 0.93830 0.91586 1.19897 0.82206 1.04420 0.85877 1.45794 1.12969 1.63783 1.11804 1.19465 0.87107 0.79085 0.83117 1.90775 1.52495 1.43854 1.52850 1.20568 0.89412 0.79615 0.82826 1.90831 1.53472 1.43121 1.53064 1.43021 1.13129 1.58359 1.12867 1.17471 0.84496 0.94323 0.97851 1.20493 0.97217 1.01971 1.06876 1.20844 0.94636 0.96504 0.98908 1.21370 1.00658 0.95722 1.03587 1.17804 0.90383 0.92413 0.90706 1.19756 1.17984 1.10142 1.05008 0.91550 1.26675 0.97951 0.98622 0.94412 1.69852 1.29661 1.38486 1.06662 0.85237 0.78083 0.77604 0.78992 1.18511 1.18833 1.18794 1.20932 0.96496 0.98942 1.08890 0.92500 0.87283 0.92847 0.85592 0.85036 0.76783 0.87276 0.85995 0.74827 0.73512 0.84968 0.85727 0.87662 0.89973 0.89164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.77 10.24 71.98 0.74 -1.03 16 2 C 0.10 0.81 6.90 86.38 0.60 1.40 16 3 N -0.27 -4.20 3.34 -334.40 -1.12 -5.31 16 4 N -0.10 -2.31 13.17 37.02 0.49 -1.83 16 5 N -0.31 -7.48 12.41 -58.26 -0.72 -8.20 16 6 C -0.03 -0.49 11.99 83.73 1.00 0.52 16 7 C -0.04 -0.57 6.36 41.36 0.26 -0.30 16 8 C 0.20 2.29 5.89 85.63 0.50 2.79 16 9 N -0.69 -12.04 5.52 -468.24 -2.58 -14.63 16 10 C 0.53 12.61 7.89 87.24 0.69 13.29 16 11 O -0.52 -13.04 16.48 -3.25 -0.05 -13.09 16 12 C 0.49 15.95 7.61 87.24 0.66 16.62 16 13 O -0.53 -20.83 14.23 -3.32 -0.05 -20.87 16 14 N -0.63 -21.02 5.32 -304.97 -1.62 -22.64 16 15 C 0.15 6.46 6.25 38.16 0.24 6.70 16 16 C -0.24 -9.80 9.97 22.59 0.23 -9.58 16 17 C -0.09 -3.94 10.02 22.20 0.22 -3.72 16 18 C -0.19 -10.02 8.69 22.76 0.20 -9.83 16 19 C 0.09 4.95 5.57 -21.31 -0.12 4.83 16 20 C -0.50 -27.84 9.05 23.46 0.21 -27.63 16 21 H 0.07 3.70 7.90 -2.91 -0.02 3.67 16 22 C 0.04 1.97 5.16 85.25 0.44 2.41 16 23 N -0.82 -42.66 10.94 21.82 0.24 -42.42 16 24 Si 0.98 38.90 29.59 68.60 2.03 40.93 16 25 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 26 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 27 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 28 C -0.23 -11.77 8.39 22.86 0.19 -11.58 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.05 0.73 7.89 -2.39 -0.02 0.71 16 32 H 0.13 0.68 8.14 -2.39 -0.02 0.67 16 33 H 0.13 0.41 7.23 -2.39 -0.02 0.39 16 34 H 0.22 2.45 8.06 -2.91 -0.02 2.43 16 35 H 0.11 0.88 7.32 -2.38 -0.02 0.86 16 36 H 0.12 1.14 8.14 -2.38 -0.02 1.12 16 37 H 0.41 7.92 7.70 -92.71 -0.71 7.21 16 38 H 0.43 11.59 8.30 -92.71 -0.77 10.82 16 39 H 0.13 4.24 8.06 -2.91 -0.02 4.22 16 40 H 0.12 4.60 8.06 -2.91 -0.02 4.57 16 41 H 0.11 5.67 6.16 -2.91 -0.02 5.66 16 42 H 0.29 13.51 8.30 -92.70 -0.77 12.74 16 43 H 0.09 4.76 6.48 -2.91 -0.02 4.74 16 Total: -1.00 -72.32 376.30 2.28 -70.04 By element: Atomic # 1 Polarization: 33.52 SS G_CDS: -0.39 Total: 33.13 kcal Atomic # 6 Polarization: -21.17 SS G_CDS: 6.07 Total: -15.11 kcal Atomic # 7 Polarization: -89.71 SS G_CDS: -5.32 Total: -95.03 kcal Atomic # 8 Polarization: -33.86 SS G_CDS: -0.10 Total: -33.96 kcal Atomic # 14 Polarization: 38.90 SS G_CDS: 2.03 Total: 40.93 kcal Total: -72.32 2.28 -70.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331756253.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.255 kcal (2) G-P(sol) polarization free energy of solvation -72.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds