Wall clock time and date at job start Wed Apr 1 2020 02:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34949 * 126.04051 * 2 1 4 4 C 1.35319 * 107.74553 * 180.14737 * 3 2 1 5 5 C 1.50700 * 126.03898 * 179.87438 * 4 3 2 6 6 H 1.09006 * 109.47622 * 339.73665 * 5 4 3 7 7 C 1.53085 * 109.49135 * 99.76130 * 5 4 3 8 8 C 1.53178 * 109.16551 * 177.59869 * 7 5 4 9 9 H 1.09000 * 109.61516 * 183.11204 * 8 7 5 10 10 N 1.46501 * 109.54458 * 62.88708 * 8 7 5 11 11 S 1.65593 * 120.00113 * 145.44442 * 10 8 7 12 12 O 1.42095 * 104.28011 * 308.93235 * 11 10 8 13 13 O 1.42099 * 104.27771 * 181.06999 * 11 10 8 14 14 C 1.81403 * 104.44946 * 65.00082 * 11 10 8 15 15 C 1.53004 * 109.47190 * 179.97438 * 14 11 10 16 16 C 1.50699 * 109.46843 * 180.02562 * 15 14 11 17 17 H 1.08002 * 120.00516 * 359.97438 * 16 15 14 18 18 C 1.37884 * 119.99783 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99707 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99956 * 180.27458 * 18 16 15 21 21 H 1.48497 * 109.47172 * 179.72730 * 20 18 16 22 22 H 1.48506 * 109.47132 * 299.72429 * 20 18 16 23 23 H 1.48501 * 109.47173 * 59.72550 * 20 18 16 24 24 C 1.53178 * 109.03413 * 303.02145 * 8 7 5 25 25 C 1.53096 * 109.16315 * 56.97873 * 24 8 7 26 26 O 1.42900 * 109.47841 * 219.71176 * 5 4 3 27 27 C 1.39868 * 107.92210 * 359.60940 * 4 3 2 28 28 N 1.30840 * 108.20020 * 0.23835 * 27 4 3 29 29 H 1.08997 * 109.47489 * 270.26481 * 1 2 3 30 30 H 1.08999 * 109.47086 * 30.26554 * 1 2 3 31 31 H 1.09001 * 109.47352 * 150.25758 * 1 2 3 32 32 H 1.07998 * 126.12479 * 359.97438 * 3 2 1 33 33 H 1.09001 * 109.52503 * 57.68832 * 7 5 4 34 34 H 1.09006 * 109.52681 * 297.50546 * 7 5 4 35 35 H 0.97003 * 119.99793 * 325.44471 * 10 8 7 36 36 H 1.09006 * 109.46776 * 59.99995 * 14 11 10 37 37 H 1.08997 * 109.46971 * 300.00053 * 14 11 10 38 38 H 1.09001 * 109.46361 * 60.00469 * 15 14 11 39 39 H 1.08997 * 109.46991 * 300.00360 * 15 14 11 40 40 H 0.97005 * 119.99656 * 179.97438 * 19 18 16 41 41 H 1.08997 * 109.52215 * 176.88605 * 24 8 7 42 42 H 1.09000 * 109.52119 * 297.00679 * 24 8 7 43 43 H 1.08997 * 109.47628 * 62.37428 * 25 24 8 44 44 H 1.09003 * 109.47755 * 182.39734 * 25 24 8 45 45 H 1.07998 * 125.89876 * 180.22877 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6664 -0.0033 5 6 4.7680 1.5451 -0.0072 6 1 4.5002 2.5401 -0.3630 7 6 5.3296 1.6449 1.4134 8 6 6.6070 2.4900 1.3910 9 1 7.0434 2.5200 2.3893 10 7 6.2865 3.8513 0.9549 11 16 7.1123 5.1395 1.5880 12 8 7.0290 4.9525 2.9941 13 8 6.5254 6.2731 0.9636 14 6 8.8181 4.9094 1.0152 15 6 9.6909 6.0510 1.5405 16 6 11.1078 5.8601 1.0641 17 1 11.3606 5.0094 0.4486 18 6 12.0816 6.7710 1.4148 19 7 11.7740 7.8061 2.1655 20 14 13.8364 6.5386 0.8180 21 1 14.6825 7.6491 1.3239 22 1 14.3636 5.2452 1.3225 23 1 13.8580 6.5365 -0.6668 24 6 7.6051 1.8607 0.4142 25 6 6.9556 1.7525 -0.9680 26 8 5.7570 0.9805 -0.8704 27 6 3.5346 -0.7322 0.0037 28 7 2.2891 -1.1328 0.0057 29 1 -0.3634 0.0047 1.0276 30 1 -0.3633 0.8876 -0.5179 31 1 -0.3634 -0.8923 -0.5098 32 1 1.9282 2.1193 -0.0004 33 1 5.5598 0.6465 1.7852 34 1 4.5928 2.1159 2.0642 35 1 5.5905 3.9981 0.2954 36 1 8.8384 4.9088 -0.0747 37 1 9.2007 3.9587 1.3862 38 1 9.6705 6.0519 2.6303 39 1 9.3080 7.0016 1.1691 40 1 12.4593 8.4467 2.4126 41 1 8.4957 2.4859 0.3502 42 1 7.8822 0.8670 0.7663 43 1 6.7165 2.7501 -1.3362 44 1 7.6462 1.2664 -1.6571 45 1 4.4053 -1.3711 0.0066 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331974476.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:05 Heat of formation + Delta-G solvation = -46.787214 kcal Electronic energy + Delta-G solvation = -28254.960923 eV Core-core repulsion = 24208.319111 eV Total energy + Delta-G solvation = -4046.641812 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.55451 -39.69820 -36.63255 -35.57967 -35.38599 -33.94911 -33.83276 -32.20281 -31.22709 -30.69087 -29.55715 -27.04526 -25.64177 -24.70252 -23.72205 -21.71687 -21.42890 -20.72313 -20.14457 -18.85575 -17.77082 -17.23225 -16.61819 -16.14670 -16.13977 -15.85005 -15.64780 -15.39745 -14.99494 -14.70404 -14.56729 -14.53876 -14.21129 -13.47116 -13.29328 -13.21300 -13.09948 -12.95576 -12.54957 -12.48524 -12.39119 -11.80324 -11.78489 -11.63043 -11.53894 -11.46373 -11.21519 -11.08021 -11.01912 -10.93190 -10.45154 -10.43705 -10.36971 -9.91086 -9.70867 -9.66823 -9.47419 -9.07178 -8.66391 -8.51526 -6.13839 -4.19538 0.76281 1.56819 2.20230 2.49387 3.09297 3.26124 3.31279 3.32732 3.64062 4.21171 4.25274 4.36331 4.50598 4.52780 4.60444 4.70952 4.74279 4.80462 4.85660 4.93284 4.94767 4.99974 5.09571 5.21285 5.25645 5.35578 5.46493 5.52180 5.58601 5.63903 5.68385 5.73865 5.88564 5.92986 5.95527 6.14344 6.36927 6.47153 6.65225 7.02773 7.10568 7.27912 7.34123 7.42137 7.78646 8.15534 8.83536 9.45224 10.97078 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.024129 B = 0.002417 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.172797 B =11582.956937 C =12317.528999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.378 5.378 3 C 0.065 3.935 4 C -0.231 4.231 5 C 0.172 3.828 6 H 0.062 0.938 7 C -0.144 4.144 8 C 0.146 3.854 9 H 0.101 0.899 10 N -1.123 6.123 11 S 2.591 3.409 12 O -0.966 6.966 13 O -0.968 6.968 14 C -0.591 4.591 15 C 0.029 3.971 16 C -0.520 4.520 17 H 0.061 0.939 18 C 0.057 3.943 19 N -0.890 5.890 20 Si 0.900 3.100 21 H -0.286 1.286 22 H -0.275 1.275 23 H -0.275 1.275 24 C -0.184 4.184 25 C 0.064 3.936 26 O -0.374 6.374 27 C 0.075 3.925 28 N -0.303 5.303 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.175 0.825 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.409 0.591 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.033 0.967 39 H 0.033 0.967 40 H 0.266 0.734 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.054 0.946 44 H 0.097 0.903 45 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.354 -15.979 -5.441 25.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.159 5.159 3 C -0.081 4.081 4 C -0.242 4.242 5 C 0.113 3.887 6 H 0.080 0.920 7 C -0.183 4.183 8 C 0.039 3.961 9 H 0.118 0.882 10 N -0.880 5.880 11 S 2.688 3.312 12 O -0.956 6.956 13 O -0.958 6.958 14 C -0.724 4.724 15 C -0.010 4.010 16 C -0.560 4.560 17 H 0.079 0.921 18 C -0.145 4.145 19 N -0.528 5.528 20 Si 0.728 3.272 21 H -0.211 1.211 22 H -0.201 1.201 23 H -0.201 1.201 24 C -0.224 4.224 25 C -0.013 4.013 26 O -0.293 6.293 27 C -0.111 4.111 28 N -0.124 5.124 29 H 0.093 0.907 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.192 0.808 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.243 0.757 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.051 0.949 39 H 0.051 0.949 40 H 0.075 0.925 41 H 0.106 0.894 42 H 0.104 0.896 43 H 0.073 0.927 44 H 0.115 0.885 45 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -20.578 -16.352 -4.753 26.710 hybrid contribution 1.740 0.647 -0.791 2.018 sum -18.838 -15.705 -5.544 25.145 Atomic orbital electron populations 1.21856 0.74111 1.04534 1.03420 1.48456 1.06673 1.03823 1.56996 1.22237 0.90583 0.93574 1.01739 1.19691 0.93114 0.94238 1.17193 1.19981 0.85244 0.93964 0.89524 0.92035 1.22410 0.97204 1.01088 0.97609 1.20853 0.95559 0.81287 0.98451 0.88154 1.55967 1.52660 1.19896 1.59523 1.05606 0.77990 0.72777 0.74788 1.93544 1.86650 1.85164 1.30247 1.93552 1.76049 1.48619 1.77629 1.30549 1.19653 1.10668 1.11512 1.18955 0.94750 0.90158 0.97178 1.20950 0.92258 1.09866 1.32901 0.92082 1.25074 0.99417 0.95061 0.94971 1.69945 1.34215 1.12681 1.35963 0.86528 0.83779 0.77816 0.79123 1.21113 1.20082 1.20087 1.22880 0.99603 1.02961 0.96927 1.22535 0.86165 0.96206 0.96381 1.87934 1.25723 1.49579 1.66052 1.23735 0.94924 0.94450 0.97992 1.77400 1.01770 1.08120 1.25083 0.90718 0.89432 0.89265 0.80766 0.89599 0.90017 0.75714 0.86035 0.86150 0.94858 0.94886 0.92472 0.89431 0.89552 0.92749 0.88536 0.79799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.46 11.47 59.84 0.69 1.14 16 2 N -0.38 -3.30 4.01 -68.17 -0.27 -3.58 16 3 C 0.07 0.54 11.40 -17.22 -0.20 0.34 16 4 C -0.23 -2.22 5.12 -105.05 -0.54 -2.76 16 5 C 0.17 1.61 2.89 -27.84 -0.08 1.53 16 6 H 0.06 0.53 6.70 -51.93 -0.35 0.19 16 7 C -0.14 -1.33 5.09 -26.60 -0.14 -1.47 16 8 C 0.15 1.54 3.05 -67.75 -0.21 1.33 16 9 H 0.10 1.12 7.49 -51.93 -0.39 0.73 16 10 N -1.12 -13.36 4.76 -4.73 -0.02 -13.38 16 11 S 2.59 43.89 5.44 -107.50 -0.58 43.30 16 12 O -0.97 -19.29 17.39 -57.54 -1.00 -20.29 16 13 O -0.97 -19.34 18.08 -57.54 -1.04 -20.38 16 14 C -0.59 -10.63 5.10 37.16 0.19 -10.44 16 15 C 0.03 0.71 4.98 -27.88 -0.14 0.57 16 16 C -0.52 -14.02 9.11 -34.44 -0.31 -14.33 16 17 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 19 N -0.89 -26.15 13.29 55.43 0.74 -25.42 16 20 Si 0.90 20.92 29.54 -169.99 -5.02 15.89 16 21 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 24 C -0.18 -1.76 5.81 -26.59 -0.15 -1.91 16 25 C 0.06 0.60 6.68 37.21 0.25 0.84 16 26 O -0.37 -3.87 10.18 -35.23 -0.36 -4.23 16 27 C 0.08 0.78 11.71 -17.36 -0.20 0.58 16 28 N -0.30 -3.38 12.58 30.62 0.39 -3.00 16 29 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.18 0.89 8.06 -52.49 -0.42 0.47 16 33 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.41 4.11 7.05 -34.47 -0.24 3.87 16 36 H 0.12 1.94 8.14 -51.92 -0.42 1.52 16 37 H 0.12 1.91 6.84 -51.93 -0.35 1.55 16 38 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.09 0.87 5.76 -51.93 -0.30 0.57 16 42 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.05 0.50 7.64 -51.93 -0.40 0.10 16 44 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.19 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 379.50 15.07 5.72 5.72 Total: -1.00 -37.17 379.50 -9.04 -46.21 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -6.64 Total: 2.21 kcal Atomic # 6 Polarization: -22.13 SS G_CDS: -0.94 Total: -23.07 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: 0.83 Total: -45.38 kcal Atomic # 8 Polarization: -42.50 SS G_CDS: -2.40 Total: -44.90 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 43.89 SS G_CDS: -0.58 Total: 43.30 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -37.17 -9.04 -46.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331974476.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.572 kcal (2) G-P(sol) polarization free energy of solvation -37.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds