Wall clock time and date at job start Wed Apr 1 2020 02:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34949 * 126.04051 * 2 1 4 4 C 1.35319 * 107.74553 * 180.14737 * 3 2 1 5 5 C 1.50700 * 126.03898 * 179.87438 * 4 3 2 6 6 H 1.09006 * 109.47622 * 339.73665 * 5 4 3 7 7 C 1.53085 * 109.49135 * 99.76130 * 5 4 3 8 8 C 1.53178 * 109.16551 * 177.59869 * 7 5 4 9 9 H 1.09000 * 109.61516 * 183.11204 * 8 7 5 10 10 N 1.46501 * 109.54458 * 62.88708 * 8 7 5 11 11 S 1.65593 * 120.00113 * 145.44442 * 10 8 7 12 12 O 1.42095 * 104.28011 * 308.93235 * 11 10 8 13 13 O 1.42099 * 104.27771 * 181.06999 * 11 10 8 14 14 C 1.81403 * 104.44946 * 65.00082 * 11 10 8 15 15 C 1.53004 * 109.47190 * 179.97438 * 14 11 10 16 16 C 1.50699 * 109.46843 * 180.02562 * 15 14 11 17 17 H 1.08002 * 120.00516 * 359.97438 * 16 15 14 18 18 C 1.37884 * 119.99783 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99707 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99956 * 180.27458 * 18 16 15 21 21 H 1.48497 * 109.47172 * 179.72730 * 20 18 16 22 22 H 1.48506 * 109.47132 * 299.72429 * 20 18 16 23 23 H 1.48501 * 109.47173 * 59.72550 * 20 18 16 24 24 C 1.53178 * 109.03413 * 303.02145 * 8 7 5 25 25 C 1.53096 * 109.16315 * 56.97873 * 24 8 7 26 26 O 1.42900 * 109.47841 * 219.71176 * 5 4 3 27 27 C 1.39868 * 107.92210 * 359.60940 * 4 3 2 28 28 N 1.30840 * 108.20020 * 0.23835 * 27 4 3 29 29 H 1.08997 * 109.47489 * 270.26481 * 1 2 3 30 30 H 1.08999 * 109.47086 * 30.26554 * 1 2 3 31 31 H 1.09001 * 109.47352 * 150.25758 * 1 2 3 32 32 H 1.07998 * 126.12479 * 359.97438 * 3 2 1 33 33 H 1.09001 * 109.52503 * 57.68832 * 7 5 4 34 34 H 1.09006 * 109.52681 * 297.50546 * 7 5 4 35 35 H 0.97003 * 119.99793 * 325.44471 * 10 8 7 36 36 H 1.09006 * 109.46776 * 59.99995 * 14 11 10 37 37 H 1.08997 * 109.46971 * 300.00053 * 14 11 10 38 38 H 1.09001 * 109.46361 * 60.00469 * 15 14 11 39 39 H 1.08997 * 109.46991 * 300.00360 * 15 14 11 40 40 H 0.97005 * 119.99656 * 179.97438 * 19 18 16 41 41 H 1.08997 * 109.52215 * 176.88605 * 24 8 7 42 42 H 1.09000 * 109.52119 * 297.00679 * 24 8 7 43 43 H 1.08997 * 109.47628 * 62.37428 * 25 24 8 44 44 H 1.09003 * 109.47755 * 182.39734 * 25 24 8 45 45 H 1.07998 * 125.89876 * 180.22877 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6664 -0.0033 5 6 4.7680 1.5451 -0.0072 6 1 4.5002 2.5401 -0.3630 7 6 5.3296 1.6449 1.4134 8 6 6.6070 2.4900 1.3910 9 1 7.0434 2.5200 2.3893 10 7 6.2865 3.8513 0.9549 11 16 7.1123 5.1395 1.5880 12 8 7.0290 4.9525 2.9941 13 8 6.5254 6.2731 0.9636 14 6 8.8181 4.9094 1.0152 15 6 9.6909 6.0510 1.5405 16 6 11.1078 5.8601 1.0641 17 1 11.3606 5.0094 0.4486 18 6 12.0816 6.7710 1.4148 19 7 11.7740 7.8061 2.1655 20 14 13.8364 6.5386 0.8180 21 1 14.6825 7.6491 1.3239 22 1 14.3636 5.2452 1.3225 23 1 13.8580 6.5365 -0.6668 24 6 7.6051 1.8607 0.4142 25 6 6.9556 1.7525 -0.9680 26 8 5.7570 0.9805 -0.8704 27 6 3.5346 -0.7322 0.0037 28 7 2.2891 -1.1328 0.0057 29 1 -0.3634 0.0047 1.0276 30 1 -0.3633 0.8876 -0.5179 31 1 -0.3634 -0.8923 -0.5098 32 1 1.9282 2.1193 -0.0004 33 1 5.5598 0.6465 1.7852 34 1 4.5928 2.1159 2.0642 35 1 5.5905 3.9981 0.2954 36 1 8.8384 4.9088 -0.0747 37 1 9.2007 3.9587 1.3862 38 1 9.6705 6.0519 2.6303 39 1 9.3080 7.0016 1.1691 40 1 12.4593 8.4467 2.4126 41 1 8.4957 2.4859 0.3502 42 1 7.8822 0.8670 0.7663 43 1 6.7165 2.7501 -1.3362 44 1 7.6462 1.2664 -1.6571 45 1 4.4053 -1.3711 0.0066 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331974476.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:05 Heat of formation + Delta-G solvation = -75.201403 kcal Electronic energy + Delta-G solvation = -28256.193054 eV Core-core repulsion = 24208.319111 eV Total energy + Delta-G solvation = -4047.873944 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.20438 -40.46393 -38.13140 -36.99622 -36.38712 -35.86917 -34.43356 -33.15591 -32.82754 -31.63867 -30.21970 -27.66339 -27.47984 -25.46664 -24.47564 -23.51186 -22.10716 -21.41545 -21.06633 -20.03612 -19.13304 -18.40592 -17.89078 -17.31161 -17.05226 -16.85664 -16.54154 -16.42290 -16.33189 -16.10640 -15.47665 -15.22047 -15.12828 -14.89316 -14.44770 -14.18164 -13.80455 -13.74181 -13.66206 -13.49691 -13.27471 -13.18086 -13.06262 -13.03812 -12.87162 -12.74994 -12.70684 -12.35418 -12.20826 -12.17281 -11.95575 -11.80428 -11.64646 -11.16468 -11.11091 -10.61092 -10.53220 -10.35911 -10.24949 -9.32097 -8.23245 -6.36597 -0.64499 0.94290 1.42979 1.45955 1.53881 1.69185 1.79254 1.86642 2.40098 2.83816 2.96084 3.10390 3.29555 3.68044 3.78404 3.90868 3.99438 4.01488 4.08504 4.11885 4.16190 4.29459 4.34683 4.39934 4.46010 4.51176 4.65807 4.71744 4.73864 4.82621 4.89568 4.95227 4.96070 5.09685 5.21819 5.22920 5.31994 5.33910 5.36750 5.68973 5.71550 6.08914 6.11803 6.12650 6.41073 6.75160 6.77218 7.33321 8.88655 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.024129 B = 0.002417 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.172797 B =11582.956937 C =12317.528999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.380 5.380 3 C 0.070 3.930 4 C -0.250 4.250 5 C 0.174 3.826 6 H 0.070 0.930 7 C -0.137 4.137 8 C 0.139 3.861 9 H 0.095 0.905 10 N -1.102 6.102 11 S 2.619 3.381 12 O -0.997 6.997 13 O -1.000 7.000 14 C -0.588 4.588 15 C 0.021 3.979 16 C -0.535 4.535 17 H 0.078 0.922 18 C -0.006 4.006 19 N -0.935 5.935 20 Si 0.972 3.028 21 H -0.287 1.287 22 H -0.263 1.263 23 H -0.263 1.263 24 C -0.183 4.183 25 C 0.060 3.940 26 O -0.385 6.385 27 C 0.064 3.936 28 N -0.339 5.339 29 H 0.085 0.915 30 H 0.114 0.886 31 H 0.089 0.911 32 H 0.206 0.794 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.421 0.579 36 H 0.146 0.854 37 H 0.145 0.855 38 H 0.006 0.994 39 H 0.005 0.995 40 H 0.266 0.734 41 H 0.086 0.914 42 H 0.099 0.901 43 H 0.057 0.943 44 H 0.108 0.892 45 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.679 -17.319 -6.743 27.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.162 5.162 3 C -0.077 4.077 4 C -0.262 4.262 5 C 0.115 3.885 6 H 0.088 0.912 7 C -0.177 4.177 8 C 0.032 3.968 9 H 0.113 0.887 10 N -0.864 5.864 11 S 2.715 3.285 12 O -0.987 6.987 13 O -0.990 6.990 14 C -0.720 4.720 15 C -0.018 4.018 16 C -0.574 4.574 17 H 0.096 0.904 18 C -0.204 4.204 19 N -0.574 5.574 20 Si 0.796 3.204 21 H -0.213 1.213 22 H -0.187 1.187 23 H -0.188 1.188 24 C -0.222 4.222 25 C -0.016 4.016 26 O -0.304 6.304 27 C -0.122 4.122 28 N -0.161 5.161 29 H 0.103 0.897 30 H 0.133 0.867 31 H 0.108 0.892 32 H 0.223 0.777 33 H 0.110 0.890 34 H 0.101 0.899 35 H 0.259 0.741 36 H 0.164 0.836 37 H 0.163 0.837 38 H 0.024 0.976 39 H 0.023 0.977 40 H 0.075 0.925 41 H 0.104 0.896 42 H 0.117 0.883 43 H 0.075 0.925 44 H 0.126 0.874 45 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -20.917 -17.712 -6.072 28.073 hybrid contribution 1.709 1.010 -0.384 2.022 sum -19.208 -16.702 -6.456 26.260 Atomic orbital electron populations 1.22189 0.72007 1.05942 1.04580 1.48807 1.07953 1.03355 1.56067 1.22762 0.90194 0.94747 1.00044 1.19830 0.93855 0.93976 1.18496 1.19995 0.85037 0.94246 0.89199 0.91230 1.22371 0.96400 1.01010 0.97903 1.21076 0.96772 0.80292 0.98617 0.88670 1.55442 1.52024 1.19349 1.59559 1.04491 0.77358 0.72778 0.73844 1.93504 1.86941 1.85809 1.32465 1.93503 1.76488 1.50988 1.78004 1.30451 1.19590 1.08995 1.12975 1.18812 0.95724 0.91658 0.95637 1.21491 0.93273 1.10109 1.32524 0.90381 1.26114 1.04382 0.94764 0.95130 1.70100 1.35726 1.13898 1.37708 0.85389 0.77967 0.78005 0.79041 1.21299 1.18744 1.18801 1.22882 0.99042 1.03475 0.96822 1.22637 0.86128 0.96481 0.96375 1.87935 1.26121 1.50060 1.66268 1.23920 0.95022 0.95164 0.98067 1.77328 1.02455 1.09825 1.26488 0.89667 0.86720 0.89224 0.77691 0.88965 0.89907 0.74143 0.83616 0.83722 0.97606 0.97671 0.92516 0.89599 0.88299 0.92497 0.87444 0.79364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.64 11.47 127.77 1.47 2.11 16 2 N -0.38 -6.03 4.01 -369.58 -1.48 -7.51 16 3 C 0.07 1.00 11.40 83.54 0.95 1.95 16 4 C -0.25 -4.40 5.12 -20.14 -0.10 -4.51 16 5 C 0.17 2.89 2.89 29.88 0.09 2.97 16 6 H 0.07 1.02 6.70 -2.38 -0.02 1.00 16 7 C -0.14 -2.27 5.09 30.68 0.16 -2.12 16 8 C 0.14 2.66 3.05 45.11 0.14 2.80 16 9 H 0.10 1.97 7.49 -2.39 -0.02 1.95 16 10 N -1.10 -24.18 4.76 -168.89 -0.80 -24.98 16 11 S 2.62 87.28 5.44 -56.49 -0.31 86.97 16 12 O -1.00 -39.84 17.39 -127.65 -2.22 -42.06 16 13 O -1.00 -39.76 18.08 -127.65 -2.31 -42.07 16 14 C -0.59 -20.61 5.10 71.98 0.37 -20.24 16 15 C 0.02 1.04 4.98 29.85 0.15 1.19 16 16 C -0.54 -28.73 9.11 25.60 0.23 -28.49 16 17 H 0.08 3.81 7.74 -2.91 -0.02 3.79 16 18 C -0.01 -0.31 5.46 84.66 0.46 0.15 16 19 N -0.93 -56.25 13.29 21.45 0.28 -55.97 16 20 Si 0.97 42.56 29.54 68.60 2.03 44.59 16 21 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 22 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 23 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 24 C -0.18 -3.03 5.81 30.69 0.18 -2.85 16 25 C 0.06 0.97 6.68 72.01 0.48 1.45 16 26 O -0.38 -7.16 10.18 -148.98 -1.52 -8.68 16 27 C 0.06 1.27 11.71 85.24 1.00 2.27 16 28 N -0.34 -7.36 12.58 -57.02 -0.72 -8.08 16 29 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 31 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.21 1.41 8.06 -2.91 -0.02 1.39 16 33 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 35 H 0.42 7.50 7.05 -96.75 -0.68 6.82 16 36 H 0.15 4.36 8.14 -2.39 -0.02 4.35 16 37 H 0.14 4.32 6.84 -2.39 -0.02 4.30 16 38 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 39 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 40 H 0.27 15.06 8.31 -92.70 -0.77 14.29 16 41 H 0.09 1.46 5.76 -2.39 -0.01 1.45 16 42 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.06 0.88 7.64 -2.39 -0.02 0.86 16 44 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.19 3.25 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -81.42 379.50 -1.16 -82.58 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: 0.32 Total: 18.53 kcal Atomic # 6 Polarization: -48.89 SS G_CDS: 5.56 Total: -43.32 kcal Atomic # 7 Polarization: -93.82 SS G_CDS: -2.72 Total: -96.54 kcal Atomic # 8 Polarization: -86.76 SS G_CDS: -6.05 Total: -92.80 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Atomic # 16 Polarization: 87.28 SS G_CDS: -0.31 Total: 86.97 kcal Total: -81.42 -1.16 -82.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331974476.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.375 kcal (2) G-P(sol) polarization free energy of solvation -81.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds