Wall clock time and date at job start Wed Apr 1 2020 01:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46692 * 2 1 4 4 C 1.52999 * 109.46819 * 239.99757 * 2 1 3 5 5 C 1.50707 * 109.46798 * 175.00390 * 4 2 1 6 6 C 1.38227 * 119.62024 * 124.97813 * 5 4 2 7 7 C 1.38627 * 119.15702 * 179.78495 * 6 5 4 8 8 C 1.38669 * 118.42389 * 0.47826 * 7 6 5 9 9 C 1.38186 * 119.16143 * 359.49762 * 8 7 6 10 10 N 1.31856 * 119.61172 * 304.99564 * 5 4 2 11 11 N 1.46503 * 109.47002 * 119.99893 * 2 1 3 12 12 C 1.34773 * 119.99867 * 274.99850 * 11 2 1 13 13 O 1.21367 * 119.99831 * 0.02562 * 12 11 2 14 14 C 1.49302 * 120.00348 * 180.02562 * 12 11 2 15 15 O 1.21408 * 119.99809 * 0.02562 * 14 12 11 16 16 N 1.34774 * 120.00446 * 179.97438 * 14 12 11 17 17 C 1.40298 * 119.99905 * 179.97438 * 16 14 12 18 18 C 1.40715 * 126.10104 * 359.69462 * 17 16 14 19 19 N 1.30881 * 108.37398 * 179.85211 * 18 17 16 20 20 N 1.40056 * 108.43840 * 0.40755 * 19 18 17 21 21 C 1.37294 * 126.05958 * 179.74029 * 20 19 18 22 22 H 1.08003 * 120.00123 * 179.97438 * 21 20 19 23 23 C 1.39006 * 119.99985 * 0.02562 * 21 20 19 24 24 N 1.31285 * 119.99665 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00147 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47186 * 60.00024 * 25 23 21 27 27 H 1.48510 * 109.47219 * 180.02562 * 25 23 21 28 28 H 1.48505 * 109.47314 * 299.99770 * 25 23 21 29 29 C 1.35787 * 126.09646 * 180.02562 * 17 16 14 30 30 H 1.09002 * 109.47261 * 299.99940 * 1 2 3 31 31 H 1.09003 * 109.47618 * 60.00229 * 1 2 3 32 32 H 1.09002 * 109.47135 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47454 * 55.00357 * 4 2 1 34 34 H 1.09007 * 109.47108 * 294.99725 * 4 2 1 35 35 H 1.07998 * 120.41916 * 359.97438 * 6 5 4 36 36 H 1.08008 * 120.78688 * 180.22921 * 7 6 5 37 37 H 1.08002 * 120.42244 * 179.78279 * 8 7 6 38 38 H 1.07996 * 119.61757 * 180.25243 * 9 8 7 39 39 H 0.97000 * 120.00141 * 94.99697 * 11 2 1 40 40 H 0.97001 * 120.00344 * 0.02562 * 16 14 12 41 41 H 1.07999 * 125.81679 * 359.97438 * 18 17 16 42 42 H 0.97003 * 119.99761 * 180.02562 * 24 23 21 43 43 H 1.07997 * 126.25450 * 359.93823 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3127 6 6 4.3044 -1.7636 -1.4125 7 6 5.6850 -1.6545 -1.4747 8 6 6.2500 -0.3891 -1.4238 9 6 5.4235 0.7138 -1.3242 10 7 4.1133 0.5726 -1.2719 11 7 2.0183 -0.6906 1.1962 12 6 2.1470 -0.0182 2.3571 13 8 1.8580 1.1593 2.4116 14 6 2.6452 -0.7218 3.5761 15 8 2.9348 -1.8995 3.5215 16 7 2.7744 -0.0493 4.7369 17 6 3.2421 -0.7106 5.8825 18 6 3.6056 -2.0674 5.9661 19 7 3.9936 -2.3158 7.1912 20 7 3.8851 -1.1359 7.9380 21 6 4.1933 -0.9900 9.2679 22 1 4.0724 -0.0302 9.7482 23 6 4.6619 -2.0774 9.9961 24 7 4.8102 -3.2438 9.4119 25 14 5.0818 -1.8789 11.8054 26 1 3.8727 -1.4432 12.5493 27 1 5.5569 -3.1768 12.3487 28 1 6.1504 -0.8587 11.9565 29 6 3.4186 -0.1571 7.1097 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6054 -0.2618 -2.1370 34 1 1.7515 -1.7716 -1.2055 35 1 3.8305 -2.7335 -1.4447 36 1 6.3060 -2.5343 -1.5567 37 1 7.3223 -0.2669 -1.4663 38 1 5.8556 1.7030 -1.2881 39 1 2.2490 -1.6318 1.1527 40 1 2.5434 0.8918 4.7806 41 1 3.5723 -2.7817 5.1568 42 1 5.1368 -4.0027 9.9202 43 1 3.2258 0.8704 7.3807 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332889548.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:45:43 Heat of formation + Delta-G solvation = 49.507813 kcal Electronic energy + Delta-G solvation = -28614.475915 eV Core-core repulsion = 24468.858568 eV Total energy + Delta-G solvation = -4145.617347 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.71201 -40.26235 -39.47354 -38.01009 -36.38613 -34.38169 -33.22547 -32.81893 -32.41705 -30.84344 -30.30807 -28.03207 -27.32258 -25.51602 -24.21530 -23.78525 -22.61873 -21.25587 -20.83800 -20.29702 -19.45747 -18.16017 -17.45321 -17.10070 -16.76512 -16.14827 -15.81126 -15.59210 -15.49633 -15.14222 -15.07176 -14.51096 -14.20354 -14.06608 -13.78170 -13.58428 -13.40642 -13.17653 -13.01699 -12.95662 -12.56991 -12.50251 -12.23577 -11.73313 -11.66886 -11.54913 -11.27129 -11.25271 -11.16307 -10.83224 -10.57998 -10.27136 -10.08802 -9.63906 -9.29444 -9.21879 -9.18594 -9.05820 -8.86786 -8.12322 -6.76875 -6.60028 -4.27274 0.86948 1.06464 1.71480 2.64849 2.94822 3.03745 3.07326 3.36058 3.54399 3.73642 3.76595 3.96401 4.04305 4.29857 4.38275 4.59551 4.62645 4.69055 4.86069 4.91040 4.98494 4.99419 5.01634 5.05306 5.30126 5.33131 5.44324 5.48122 5.56054 5.80819 5.91756 5.95314 6.03968 6.20980 6.32406 6.36998 6.46346 6.77207 6.89102 6.94098 7.16871 7.27793 7.76790 7.78379 7.90263 8.13995 8.19307 8.50635 8.70689 9.31775 9.60443 10.35739 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.016872 B = 0.002255 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.112116 B =12412.130201 C =13231.868995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.147 3.853 3 H 0.104 0.896 4 C -0.078 4.078 5 C 0.128 3.872 6 C -0.168 4.168 7 C -0.071 4.071 8 C -0.178 4.178 9 C 0.103 3.897 10 N -0.478 5.478 11 N -0.699 5.699 12 C 0.517 3.483 13 O -0.526 6.526 14 C 0.483 3.517 15 O -0.524 6.524 16 N -0.584 5.584 17 C -0.068 4.068 18 C -0.027 4.027 19 N -0.261 5.261 20 N -0.138 5.138 21 C -0.322 4.322 22 H 0.118 0.882 23 C 0.046 3.954 24 N -0.768 5.768 25 Si 0.936 3.064 26 H -0.266 1.266 27 H -0.276 1.276 28 H -0.266 1.266 29 C -0.078 4.078 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.155 0.845 39 H 0.410 0.590 40 H 0.409 0.591 41 H 0.177 0.823 42 H 0.276 0.724 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.449 4.287 -21.196 21.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.043 3.957 3 H 0.122 0.878 4 C -0.116 4.116 5 C -0.009 4.009 6 C -0.188 4.188 7 C -0.097 4.097 8 C -0.198 4.198 9 C -0.054 4.054 10 N -0.187 5.187 11 N -0.353 5.353 12 C 0.298 3.702 13 O -0.402 6.402 14 C 0.264 3.736 15 O -0.402 6.402 16 N -0.227 5.227 17 C -0.174 4.174 18 C -0.203 4.203 19 N -0.091 5.091 20 N 0.095 4.905 21 C -0.454 4.454 22 H 0.135 0.865 23 C -0.171 4.171 24 N -0.394 5.394 25 Si 0.760 3.240 26 H -0.191 1.191 27 H -0.201 1.201 28 H -0.191 1.191 29 C -0.229 4.229 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.119 0.881 34 H 0.106 0.894 35 H 0.153 0.847 36 H 0.152 0.848 37 H 0.152 0.848 38 H 0.172 0.828 39 H 0.246 0.754 40 H 0.244 0.756 41 H 0.194 0.806 42 H 0.087 0.913 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -2.460 3.915 -20.280 20.801 hybrid contribution 0.551 0.028 0.159 0.574 sum -1.909 3.943 -20.122 20.593 Atomic orbital electron populations 1.22205 0.94587 1.02494 1.03020 1.21006 0.94002 0.98338 0.82372 0.87832 1.20903 0.89516 1.02292 0.98875 1.21132 0.96370 0.88608 0.94824 1.21997 0.94665 0.99716 1.02448 1.21606 0.95039 0.97969 0.95125 1.22162 1.01566 0.93708 1.02318 1.22746 0.88824 0.99187 0.94608 1.67428 1.12794 1.26476 1.12001 1.45783 1.65947 1.14748 1.08814 1.20232 0.78417 0.86803 0.84726 1.90727 1.48973 1.15471 1.85017 1.19715 0.82424 0.87272 0.84195 1.90644 1.49974 1.15270 1.84305 1.42156 1.60138 1.13255 1.07121 1.17258 1.19890 0.93984 0.86284 1.24133 1.05275 0.94156 0.96728 1.78255 1.25019 1.04246 1.01617 1.44551 1.34247 1.04703 1.07015 1.19876 1.45464 0.98838 0.81260 0.86491 1.25663 0.95714 0.94592 1.01151 1.70201 1.32620 1.00059 1.36558 0.85872 0.79456 0.78445 0.80262 1.19085 1.20099 1.19102 1.21308 1.15492 0.95675 0.90448 0.91587 0.91283 0.92159 0.88110 0.89434 0.84724 0.84783 0.84834 0.82774 0.75432 0.75615 0.80608 0.91322 0.83357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 9.48 37.16 0.35 -1.07 16 2 C 0.15 1.48 2.50 -67.93 -0.17 1.31 16 3 H 0.10 1.29 7.24 -51.93 -0.38 0.92 16 4 C -0.08 -0.59 5.16 -27.88 -0.14 -0.73 16 5 C 0.13 1.27 5.91 -82.58 -0.49 0.78 16 6 C -0.17 -1.48 9.71 -39.44 -0.38 -1.86 16 7 C -0.07 -0.61 10.18 -39.28 -0.40 -1.01 16 8 C -0.18 -1.55 10.11 -39.44 -0.40 -1.95 16 9 C 0.10 1.03 11.18 -17.55 -0.20 0.84 16 10 N -0.48 -5.48 9.78 -9.47 -0.09 -5.58 16 11 N -0.70 -8.64 4.78 -54.29 -0.26 -8.90 16 12 C 0.52 8.19 7.85 -11.66 -0.09 8.10 16 13 O -0.53 -9.08 16.14 5.48 0.09 -8.99 16 14 C 0.48 9.02 7.85 -11.66 -0.09 8.93 16 15 O -0.52 -10.79 13.62 5.45 0.07 -10.72 16 16 N -0.58 -11.36 5.45 -10.46 -0.06 -11.42 16 17 C -0.07 -1.60 6.90 -83.92 -0.58 -2.18 16 18 C -0.03 -0.71 10.84 -17.02 -0.18 -0.90 16 19 N -0.26 -7.52 10.39 30.81 0.32 -7.20 16 20 N -0.14 -3.79 3.73 -11.40 -0.04 -3.84 16 21 C -0.32 -8.48 10.25 -14.82 -0.15 -8.63 16 22 H 0.12 2.74 7.83 -52.48 -0.41 2.33 16 23 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 24 N -0.77 -21.24 11.81 55.50 0.66 -20.59 16 25 Si 0.94 18.76 29.55 -169.99 -5.02 13.74 16 26 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 27 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 28 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 29 C -0.08 -1.86 11.50 -16.38 -0.19 -2.04 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.09 0.49 7.87 -51.92 -0.41 0.08 16 35 H 0.13 0.87 7.95 -52.49 -0.42 0.45 16 36 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 37 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 38 H 0.15 1.20 8.06 -52.49 -0.42 0.77 16 39 H 0.41 4.71 8.07 -40.82 -0.33 4.38 16 40 H 0.41 6.94 8.29 -40.82 -0.34 6.60 16 41 H 0.18 4.47 5.92 -52.49 -0.31 4.16 16 42 H 0.28 6.99 8.31 -40.82 -0.34 6.65 16 43 H 0.15 2.97 8.06 -52.49 -0.42 2.55 16 LS Contribution 377.77 15.07 5.69 5.69 Total: -1.00 -34.50 377.77 -6.96 -41.47 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: -5.11 Total: 15.66 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -3.21 Total: 0.68 kcal Atomic # 7 Polarization: -58.05 SS G_CDS: 0.52 Total: -57.53 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: 0.16 Total: -19.71 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.02 Total: 13.74 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.50 -6.96 -41.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332889548.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.974 kcal (2) G-P(sol) polarization free energy of solvation -34.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds