Wall clock time and date at job start Wed Apr 1 2020 01:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46692 * 2 1 4 4 C 1.52999 * 109.46819 * 239.99757 * 2 1 3 5 5 C 1.50707 * 109.46798 * 175.00390 * 4 2 1 6 6 C 1.38227 * 119.62024 * 124.97813 * 5 4 2 7 7 C 1.38627 * 119.15702 * 179.78495 * 6 5 4 8 8 C 1.38669 * 118.42389 * 0.47826 * 7 6 5 9 9 C 1.38186 * 119.16143 * 359.49762 * 8 7 6 10 10 N 1.31856 * 119.61172 * 304.99564 * 5 4 2 11 11 N 1.46503 * 109.47002 * 119.99893 * 2 1 3 12 12 C 1.34773 * 119.99867 * 274.99850 * 11 2 1 13 13 O 1.21367 * 119.99831 * 0.02562 * 12 11 2 14 14 C 1.49302 * 120.00348 * 180.02562 * 12 11 2 15 15 O 1.21408 * 119.99809 * 0.02562 * 14 12 11 16 16 N 1.34774 * 120.00446 * 179.97438 * 14 12 11 17 17 C 1.40298 * 119.99905 * 179.97438 * 16 14 12 18 18 C 1.40715 * 126.10104 * 359.69462 * 17 16 14 19 19 N 1.30881 * 108.37398 * 179.85211 * 18 17 16 20 20 N 1.40056 * 108.43840 * 0.40755 * 19 18 17 21 21 C 1.37294 * 126.05958 * 179.74029 * 20 19 18 22 22 H 1.08003 * 120.00123 * 179.97438 * 21 20 19 23 23 C 1.39006 * 119.99985 * 0.02562 * 21 20 19 24 24 N 1.31285 * 119.99665 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00147 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47186 * 60.00024 * 25 23 21 27 27 H 1.48510 * 109.47219 * 180.02562 * 25 23 21 28 28 H 1.48505 * 109.47314 * 299.99770 * 25 23 21 29 29 C 1.35787 * 126.09646 * 180.02562 * 17 16 14 30 30 H 1.09002 * 109.47261 * 299.99940 * 1 2 3 31 31 H 1.09003 * 109.47618 * 60.00229 * 1 2 3 32 32 H 1.09002 * 109.47135 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47454 * 55.00357 * 4 2 1 34 34 H 1.09007 * 109.47108 * 294.99725 * 4 2 1 35 35 H 1.07998 * 120.41916 * 359.97438 * 6 5 4 36 36 H 1.08008 * 120.78688 * 180.22921 * 7 6 5 37 37 H 1.08002 * 120.42244 * 179.78279 * 8 7 6 38 38 H 1.07996 * 119.61757 * 180.25243 * 9 8 7 39 39 H 0.97000 * 120.00141 * 94.99697 * 11 2 1 40 40 H 0.97001 * 120.00344 * 0.02562 * 16 14 12 41 41 H 1.07999 * 125.81679 * 359.97438 * 18 17 16 42 42 H 0.97003 * 119.99761 * 180.02562 * 24 23 21 43 43 H 1.07997 * 126.25450 * 359.93823 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3127 6 6 4.3044 -1.7636 -1.4125 7 6 5.6850 -1.6545 -1.4747 8 6 6.2500 -0.3891 -1.4238 9 6 5.4235 0.7138 -1.3242 10 7 4.1133 0.5726 -1.2719 11 7 2.0183 -0.6906 1.1962 12 6 2.1470 -0.0182 2.3571 13 8 1.8580 1.1593 2.4116 14 6 2.6452 -0.7218 3.5761 15 8 2.9348 -1.8995 3.5215 16 7 2.7744 -0.0493 4.7369 17 6 3.2421 -0.7106 5.8825 18 6 3.6056 -2.0674 5.9661 19 7 3.9936 -2.3158 7.1912 20 7 3.8851 -1.1359 7.9380 21 6 4.1933 -0.9900 9.2679 22 1 4.0724 -0.0302 9.7482 23 6 4.6619 -2.0774 9.9961 24 7 4.8102 -3.2438 9.4119 25 14 5.0818 -1.8789 11.8054 26 1 3.8727 -1.4432 12.5493 27 1 5.5569 -3.1768 12.3487 28 1 6.1504 -0.8587 11.9565 29 6 3.4186 -0.1571 7.1097 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6054 -0.2618 -2.1370 34 1 1.7515 -1.7716 -1.2055 35 1 3.8305 -2.7335 -1.4447 36 1 6.3060 -2.5343 -1.5567 37 1 7.3223 -0.2669 -1.4663 38 1 5.8556 1.7030 -1.2881 39 1 2.2490 -1.6318 1.1527 40 1 2.5434 0.8918 4.7806 41 1 3.5723 -2.7817 5.1568 42 1 5.1368 -4.0027 9.9202 43 1 3.2258 0.8704 7.3807 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332889548.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:45:42 Heat of formation + Delta-G solvation = 24.828341 kcal Electronic energy + Delta-G solvation = -28615.546097 eV Core-core repulsion = 24468.858568 eV Total energy + Delta-G solvation = -4146.687529 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.06567 -41.37744 -40.93502 -39.49846 -37.40902 -36.06929 -35.02548 -33.66697 -33.16143 -32.31015 -31.67240 -29.88433 -27.97131 -27.26648 -25.73392 -24.48589 -23.44830 -22.92644 -22.07482 -21.56462 -21.25145 -19.66209 -19.17159 -17.87698 -17.73724 -17.45650 -17.13214 -16.93855 -16.79243 -16.48036 -16.22681 -15.72006 -15.55441 -15.21072 -15.05540 -14.95247 -14.83709 -14.61807 -14.05354 -13.80033 -13.51804 -13.40726 -13.38084 -13.15852 -12.96193 -12.89061 -12.88705 -12.46992 -12.32485 -12.13375 -11.97772 -11.95283 -11.06327 -10.88921 -10.78141 -10.57736 -10.35893 -10.29328 -10.15095 -9.85867 -8.63908 -8.49538 -6.27493 0.19753 0.29076 0.39304 1.29927 1.31351 1.42121 1.56896 1.72498 2.04124 2.12025 2.52546 2.58036 2.85482 2.93903 3.06829 3.36617 3.52579 3.65407 3.94472 4.07034 4.25877 4.28159 4.30604 4.31585 4.38139 4.50629 4.64723 4.71066 4.78908 4.87166 4.92180 4.94309 4.96736 5.05321 5.20155 5.22514 5.29171 5.30329 5.32695 5.39617 5.82298 5.89207 6.01808 6.24401 6.48112 6.66361 6.82600 7.05879 7.07984 7.39846 7.61374 8.49470 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.016872 B = 0.002255 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.112116 B =12412.130201 C =13231.868995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.147 3.853 3 H 0.079 0.921 4 C -0.071 4.071 5 C 0.110 3.890 6 C -0.175 4.175 7 C -0.083 4.083 8 C -0.183 4.183 9 C 0.081 3.919 10 N -0.507 5.507 11 N -0.681 5.681 12 C 0.524 3.476 13 O -0.542 6.542 14 C 0.485 3.515 15 O -0.542 6.542 16 N -0.584 5.584 17 C -0.057 4.057 18 C -0.048 4.048 19 N -0.307 5.307 20 N -0.162 5.162 21 C -0.354 4.354 22 H 0.141 0.859 23 C -0.004 4.004 24 N -0.820 5.820 25 Si 1.020 2.980 26 H -0.254 1.254 27 H -0.276 1.276 28 H -0.254 1.254 29 C -0.077 4.077 30 H 0.042 0.958 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.120 0.880 34 H 0.114 0.886 35 H 0.158 0.842 36 H 0.155 0.845 37 H 0.153 0.847 38 H 0.165 0.835 39 H 0.416 0.584 40 H 0.422 0.578 41 H 0.176 0.824 42 H 0.278 0.722 43 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.944 4.896 -21.868 22.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.043 3.957 3 H 0.097 0.903 4 C -0.109 4.109 5 C -0.028 4.028 6 C -0.194 4.194 7 C -0.108 4.108 8 C -0.203 4.203 9 C -0.076 4.076 10 N -0.217 5.217 11 N -0.334 5.334 12 C 0.304 3.696 13 O -0.419 6.419 14 C 0.266 3.734 15 O -0.421 6.421 16 N -0.228 5.228 17 C -0.163 4.163 18 C -0.223 4.223 19 N -0.138 5.138 20 N 0.070 4.930 21 C -0.485 4.485 22 H 0.159 0.841 23 C -0.217 4.217 24 N -0.448 5.448 25 Si 0.838 3.162 26 H -0.177 1.177 27 H -0.201 1.201 28 H -0.178 1.178 29 C -0.228 4.228 30 H 0.061 0.939 31 H 0.110 0.890 32 H 0.094 0.906 33 H 0.138 0.862 34 H 0.132 0.868 35 H 0.176 0.824 36 H 0.173 0.827 37 H 0.171 0.829 38 H 0.183 0.817 39 H 0.253 0.747 40 H 0.259 0.741 41 H 0.193 0.807 42 H 0.088 0.912 43 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -2.975 4.544 -21.016 21.707 hybrid contribution 0.679 -0.136 0.149 0.709 sum -2.296 4.408 -20.867 21.451 Atomic orbital electron populations 1.22168 0.93034 1.03504 1.03038 1.21163 0.95071 0.97204 0.82213 0.90272 1.20967 0.88240 1.03719 0.97934 1.21528 0.97535 0.88593 0.95122 1.22334 0.94932 1.00451 1.01694 1.21996 0.95534 0.98692 0.94618 1.22441 1.02591 0.93588 1.01642 1.23075 0.88907 1.00347 0.95243 1.67422 1.13593 1.27662 1.13051 1.45837 1.64262 1.14943 1.08346 1.19659 0.78866 0.86459 0.84657 1.90730 1.50155 1.15898 1.85137 1.20346 0.81118 0.87094 0.84793 1.90630 1.50337 1.16318 1.84766 1.42107 1.60514 1.13850 1.06366 1.17305 1.18374 0.93115 0.87506 1.24234 1.06224 0.95588 0.96286 1.78152 1.26699 1.06162 1.02821 1.44836 1.35457 1.04928 1.07792 1.20626 1.46170 1.00347 0.81379 0.84139 1.26887 0.94698 0.93748 1.06341 1.70371 1.34280 1.01250 1.38865 0.84642 0.79684 0.78489 0.73342 1.17747 1.20115 1.17794 1.21989 1.13905 0.96793 0.90067 0.93897 0.88962 0.90619 0.86235 0.86794 0.82407 0.82687 0.82886 0.81734 0.74720 0.74065 0.80742 0.91192 0.79612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 9.48 71.98 0.68 -1.71 16 2 C 0.15 2.72 2.50 44.99 0.11 2.83 16 3 H 0.08 1.92 7.24 -2.39 -0.02 1.91 16 4 C -0.07 -0.90 5.16 29.85 0.15 -0.74 16 5 C 0.11 2.00 5.91 42.55 0.25 2.25 16 6 C -0.17 -2.72 9.71 22.36 0.22 -2.51 16 7 C -0.08 -1.28 10.18 22.47 0.23 -1.05 16 8 C -0.18 -3.01 10.11 22.36 0.23 -2.78 16 9 C 0.08 1.59 11.18 84.67 0.95 2.54 16 10 N -0.51 -11.38 9.78 -183.88 -1.80 -13.18 16 11 N -0.68 -15.92 4.78 -444.02 -2.12 -18.05 16 12 C 0.52 16.19 7.85 87.22 0.68 16.88 16 13 O -0.54 -18.36 16.14 -3.30 -0.05 -18.42 16 14 C 0.48 17.92 7.85 87.22 0.69 18.61 16 15 O -0.54 -22.32 13.62 -3.43 -0.05 -22.37 16 16 N -0.58 -22.42 5.45 -305.34 -1.66 -24.08 16 17 C -0.06 -2.67 6.90 37.82 0.26 -2.41 16 18 C -0.05 -2.58 10.84 85.44 0.93 -1.66 16 19 N -0.31 -18.29 10.39 -56.44 -0.59 -18.88 16 20 N -0.16 -9.01 3.73 -189.98 -0.71 -9.72 16 21 C -0.35 -18.68 10.25 84.02 0.86 -17.82 16 22 H 0.14 6.43 7.83 -2.91 -0.02 6.40 16 23 C 0.00 -0.23 5.50 84.96 0.47 0.24 16 24 N -0.82 -46.67 11.81 21.66 0.26 -46.41 16 25 Si 1.02 38.14 29.55 68.60 2.03 40.17 16 26 H -0.25 -8.88 7.11 99.48 0.71 -8.18 16 27 H -0.28 -10.19 7.11 99.48 0.71 -9.49 16 28 H -0.25 -8.91 7.11 99.48 0.71 -8.20 16 29 C -0.08 -3.63 11.50 83.41 0.96 -2.67 16 30 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.09 0.97 8.14 -2.39 -0.02 0.96 16 32 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.11 0.85 7.87 -2.38 -0.02 0.83 16 35 H 0.16 1.58 7.95 -2.91 -0.02 1.56 16 36 H 0.16 1.63 8.06 -2.91 -0.02 1.60 16 37 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 38 H 0.17 2.58 8.06 -2.91 -0.02 2.56 16 39 H 0.42 8.85 8.07 -92.71 -0.75 8.10 16 40 H 0.42 13.90 8.29 -92.71 -0.77 13.13 16 41 H 0.18 9.20 5.92 -2.91 -0.02 9.18 16 42 H 0.28 14.54 8.31 -92.71 -0.77 13.77 16 43 H 0.19 7.09 8.06 -2.91 -0.02 7.06 16 Total: -1.00 -77.72 377.77 2.53 -75.19 By element: Atomic # 1 Polarization: 46.19 SS G_CDS: -0.44 Total: 45.76 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: 7.66 Total: 9.99 kcal Atomic # 7 Polarization: -123.70 SS G_CDS: -6.63 Total: -130.32 kcal Atomic # 8 Polarization: -40.68 SS G_CDS: -0.10 Total: -40.78 kcal Atomic # 14 Polarization: 38.14 SS G_CDS: 2.03 Total: 40.17 kcal Total: -77.72 2.53 -75.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332889548.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.020 kcal (2) G-P(sol) polarization free energy of solvation -77.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds