Wall clock time and date at job start Wed Apr 1 2020 01:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09004 * 109.46774 * 2 1 4 4 C 1.52990 * 109.47190 * 119.99743 * 2 1 3 5 5 N 1.46503 * 109.47384 * 175.00219 * 4 2 1 6 6 C 1.46504 * 119.99850 * 89.99417 * 5 4 2 7 7 C 1.34769 * 119.99908 * 270.00404 * 5 4 2 8 8 O 1.21282 * 120.00228 * 359.97438 * 7 5 4 9 9 C 1.50700 * 119.99960 * 179.97438 * 7 5 4 10 10 S 1.81004 * 109.47153 * 179.97438 * 9 7 5 11 11 C 1.76202 * 99.99950 * 179.97438 * 10 9 7 12 12 H 1.08001 * 120.00383 * 359.97438 * 11 10 9 13 13 C 1.38801 * 119.99939 * 180.02562 * 11 10 9 14 14 N 1.31631 * 119.99908 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99956 * 179.97438 * 13 11 10 16 16 H 1.48508 * 109.47295 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.47019 * 119.99965 * 15 13 11 18 18 H 1.48497 * 109.47395 * 239.99994 * 15 13 11 19 19 N 1.46494 * 109.47086 * 239.99848 * 2 1 3 20 20 C 1.34777 * 120.00171 * 85.00012 * 19 2 1 21 21 O 1.21276 * 119.99975 * 359.97438 * 20 19 2 22 22 C 1.50697 * 120.00086 * 179.97438 * 20 19 2 23 23 H 1.09001 * 110.28738 * 39.47635 * 22 20 19 24 24 C 1.54663 * 110.40026 * 277.47808 * 22 20 19 25 25 C 1.54628 * 101.68539 * 266.73999 * 24 22 20 26 26 C 1.51285 * 104.19604 * 334.98579 * 25 24 22 27 27 O 1.21278 * 124.94221 * 196.23381 * 26 25 24 28 28 N 1.34426 * 110.11504 * 16.24956 * 26 25 24 29 29 H 1.08999 * 109.47215 * 300.00268 * 1 2 3 30 30 H 1.08994 * 109.47047 * 60.00528 * 1 2 3 31 31 H 1.09001 * 109.46323 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47113 * 294.99996 * 4 2 1 33 33 H 1.08998 * 109.47587 * 54.99991 * 4 2 1 34 34 H 1.09003 * 109.46664 * 90.00469 * 6 5 4 35 35 H 1.09003 * 109.47068 * 210.00132 * 6 5 4 36 36 H 1.09000 * 109.47225 * 330.00517 * 6 5 4 37 37 H 1.08998 * 109.47009 * 299.99499 * 9 7 5 38 38 H 1.08998 * 109.47510 * 59.99588 * 9 7 5 39 39 H 0.96994 * 119.99708 * 179.97438 * 14 13 11 40 40 H 0.97000 * 120.00252 * 264.99681 * 19 2 1 41 41 H 1.09002 * 111.19063 * 148.56470 * 24 22 20 42 42 H 1.08994 * 110.84984 * 24.76543 * 24 22 20 43 43 H 1.08992 * 110.48523 * 216.30935 * 25 24 22 44 44 H 1.09000 * 110.59593 * 93.71880 * 25 24 22 45 45 H 0.97001 * 124.34628 * 180.40244 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 1.2492 5 7 3.5001 -0.8263 1.1906 6 6 4.3344 0.2343 1.7612 7 6 4.0758 -1.8985 0.6116 8 8 3.3852 -2.7766 0.1395 9 6 5.5777 -2.0063 0.5508 10 16 6.0389 -3.5471 -0.2797 11 6 7.7948 -3.4166 -0.2135 12 1 8.2554 -2.5558 0.2484 13 6 8.5862 -4.4197 -0.7559 14 7 8.0248 -5.4686 -1.3192 15 14 10.4477 -4.2811 -0.6864 16 1 10.8249 -3.0163 -0.0055 17 1 11.0020 -5.4334 0.0687 18 1 10.9962 -4.2836 -2.0663 19 7 2.0184 -0.6906 -1.1961 20 6 2.1471 -0.0183 -2.3571 21 8 1.8583 1.1583 -2.4117 22 6 2.6500 -0.7286 -3.5874 23 1 2.2307 -1.7333 -3.6416 24 6 4.1951 -0.7951 -3.5778 25 6 4.5680 0.4684 -4.3875 26 6 3.3568 0.7223 -5.2576 27 8 3.3409 1.4429 -6.2330 28 7 2.3006 0.0331 -4.7922 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 1.7517 -0.1582 2.1369 33 1 1.6055 -1.7197 1.2952 34 1 4.5425 0.0096 2.8073 35 1 5.2723 0.2955 1.2092 36 1 3.8090 1.1868 1.6917 37 1 5.9806 -1.1593 -0.0044 38 1 5.9835 -2.0037 1.5624 39 1 8.5779 -6.1694 -1.6986 40 1 2.2491 -1.6318 -1.1525 41 1 4.5538 -1.6966 -4.0745 42 1 4.5798 -0.7337 -2.5598 43 1 5.4475 0.2810 -5.0033 44 1 4.7428 1.3131 -3.7211 45 1 1.4196 0.0417 -5.1981 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337030605.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:32 Heat of formation + Delta-G solvation = -106.554688 kcal Electronic energy + Delta-G solvation = -28908.295187 eV Core-core repulsion = 24859.061663 eV Total energy + Delta-G solvation = -4049.233524 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.97819 -39.97110 -38.85820 -36.57411 -35.90621 -34.75888 -32.52163 -31.78272 -31.22764 -29.64861 -28.00926 -27.41722 -25.78940 -25.33270 -23.34943 -21.59460 -20.65704 -20.37040 -19.45581 -17.93844 -17.70243 -17.53854 -16.79448 -16.52406 -15.92703 -15.76883 -15.25005 -14.94699 -14.88501 -14.66199 -14.16813 -13.90323 -13.75611 -13.60318 -13.37000 -13.23175 -13.14263 -12.84242 -12.67554 -12.63980 -12.50542 -12.35865 -12.08785 -11.88662 -11.58259 -11.36887 -11.28149 -11.14101 -11.11305 -10.83388 -10.31288 -9.90670 -9.89551 -9.62181 -9.21497 -9.16278 -9.13410 -8.69649 -8.36278 -6.61996 -6.31703 -4.02957 2.43415 2.52199 2.73043 2.78957 2.95111 3.15457 3.20004 3.25000 3.41226 3.48739 4.11141 4.27028 4.38384 4.53678 4.59360 4.68337 4.78679 4.91239 4.98749 5.04234 5.04631 5.10295 5.17992 5.29806 5.30472 5.42955 5.46374 5.52721 5.59305 5.68788 5.73921 5.77505 5.82795 5.92695 5.95686 6.00584 6.29887 6.49533 6.61357 6.89076 7.29899 7.46530 7.51282 8.10207 8.19679 8.25996 8.31898 9.14951 10.75543 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.009337 B = 0.004004 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2997.966658 B = 6990.643568 C = 9132.599668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.126 3.874 3 H 0.087 0.913 4 C 0.106 3.894 5 N -0.621 5.621 6 C 0.079 3.921 7 C 0.538 3.462 8 O -0.523 6.523 9 C -0.154 4.154 10 S -0.056 6.056 11 C -0.536 4.536 12 H 0.073 0.927 13 C 0.076 3.924 14 N -0.867 5.867 15 Si 0.916 3.084 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.279 1.279 19 N -0.716 5.716 20 C 0.503 3.497 21 O -0.538 6.538 22 C 0.112 3.888 23 H 0.114 0.886 24 C -0.116 4.116 25 C -0.157 4.157 26 C 0.531 3.469 27 O -0.537 6.537 28 N -0.709 5.709 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.057 0.943 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.268 0.732 40 H 0.415 0.585 41 H 0.105 0.895 42 H 0.096 0.904 43 H 0.108 0.892 44 H 0.104 0.896 45 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.975 10.047 4.246 16.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.020 3.980 3 H 0.105 0.895 4 C -0.018 4.018 5 N -0.356 5.356 6 C -0.065 4.065 7 C 0.327 3.673 8 O -0.398 6.398 9 C -0.304 4.304 10 S 0.170 5.830 11 C -0.684 4.684 12 H 0.091 0.909 13 C -0.133 4.133 14 N -0.502 5.502 15 Si 0.742 3.258 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.205 1.205 19 N -0.373 5.373 20 C 0.287 3.713 21 O -0.414 6.414 22 C 0.002 3.998 23 H 0.132 0.868 24 C -0.154 4.154 25 C -0.197 4.197 26 C 0.318 3.682 27 O -0.414 6.414 28 N -0.364 5.364 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.255 0.745 41 H 0.123 0.877 42 H 0.115 0.885 43 H 0.126 0.874 44 H 0.123 0.877 45 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -13.041 9.796 2.970 16.579 hybrid contribution 1.673 0.691 0.747 1.958 sum -11.368 10.487 3.717 15.907 Atomic orbital electron populations 1.22117 0.94662 1.02533 1.02675 1.21401 0.94245 0.97728 0.84644 0.89521 1.21799 0.80550 1.02640 0.96799 1.47862 1.05982 1.21991 1.59760 1.21811 0.95815 0.90089 0.98754 1.20387 0.90400 0.80221 0.76255 1.90597 1.64462 1.38793 1.45963 1.23590 0.93359 1.07626 1.05853 1.85298 1.05841 1.18231 1.73598 1.22881 0.90989 1.09762 1.44791 0.90928 1.24959 0.99496 0.94437 0.94432 1.70006 1.35871 1.08588 1.35716 0.86156 0.83208 0.78305 0.78093 1.19605 1.20565 1.20503 1.46352 1.66511 1.15540 1.08890 1.20990 0.77712 0.87583 0.85026 1.90695 1.49913 1.15782 1.85052 1.21623 0.98471 0.95915 0.83783 0.86795 1.22612 0.90319 0.99284 1.03188 1.22363 0.97937 0.99796 0.99588 1.20856 0.85889 0.77711 0.83787 1.90735 1.85034 1.38024 1.27572 1.45866 1.13752 1.49279 1.27459 0.91514 0.91857 0.92014 0.89101 0.88987 0.92421 0.90568 0.91272 0.89247 0.89230 0.92181 0.74495 0.87658 0.88520 0.87352 0.87743 0.75014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 9.48 37.16 0.35 -1.00 16 2 C 0.13 1.24 2.88 -67.93 -0.20 1.04 16 3 H 0.09 0.94 7.58 -51.93 -0.39 0.55 16 4 C 0.11 0.97 5.14 -4.05 -0.02 0.95 16 5 N -0.62 -6.91 2.77 -181.57 -0.50 -7.41 16 6 C 0.08 0.67 10.24 59.85 0.61 1.28 16 7 C 0.54 8.18 6.99 -10.99 -0.08 8.10 16 8 O -0.52 -9.15 13.18 5.56 0.07 -9.08 16 9 C -0.15 -2.67 4.71 36.01 0.17 -2.50 16 10 S -0.06 -1.34 20.57 -107.50 -2.21 -3.55 16 11 C -0.54 -14.04 9.50 30.94 0.29 -13.75 16 12 H 0.07 1.82 7.80 -52.49 -0.41 1.41 16 13 C 0.08 2.03 5.49 -17.43 -0.10 1.94 16 14 N -0.87 -24.45 13.22 55.49 0.73 -23.71 16 15 Si 0.92 20.27 29.55 -169.99 -5.02 15.25 16 16 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 17 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 18 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 19 N -0.72 -8.21 4.48 -53.81 -0.24 -8.45 16 20 C 0.50 6.34 6.97 -10.99 -0.08 6.27 16 21 O -0.54 -8.39 16.24 5.56 0.09 -8.30 16 22 C 0.11 1.24 3.92 -68.06 -0.27 0.98 16 23 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 24 C -0.12 -1.33 6.71 -25.00 -0.17 -1.49 16 25 C -0.16 -1.88 6.85 -26.74 -0.18 -2.06 16 26 C 0.53 7.62 8.43 -10.86 -0.09 7.53 16 27 O -0.54 -9.67 18.03 5.56 0.10 -9.57 16 28 N -0.71 -8.46 5.47 -53.78 -0.29 -8.76 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.58 8.07 -51.93 -0.42 0.16 16 33 H 0.09 0.94 7.42 -51.93 -0.39 0.55 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.69 6.44 -51.93 -0.33 0.35 16 36 H 0.07 0.47 8.07 -51.93 -0.42 0.05 16 37 H 0.09 1.44 7.40 -51.92 -0.38 1.05 16 38 H 0.09 1.49 8.11 -51.92 -0.42 1.07 16 39 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 40 H 0.41 5.16 5.82 -40.82 -0.24 4.93 16 41 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.10 1.18 7.89 -51.93 -0.41 0.77 16 43 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 45 H 0.41 4.31 8.96 -40.82 -0.37 3.94 16 LS Contribution 389.18 15.07 5.86 5.86 Total: -1.00 -34.67 389.18 -7.85 -42.53 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -6.70 Total: 7.92 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: 0.25 Total: 7.28 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: -0.31 Total: -48.33 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: 0.26 Total: -26.95 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Atomic # 16 Polarization: -1.34 SS G_CDS: -2.21 Total: -3.55 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.67 -7.85 -42.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337030605.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.025 kcal (2) G-P(sol) polarization free energy of solvation -34.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds