Wall clock time and date at job start Wed Apr 1 2020 01:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09004 * 109.46774 * 2 1 4 4 C 1.52990 * 109.47190 * 119.99743 * 2 1 3 5 5 N 1.46503 * 109.47384 * 175.00219 * 4 2 1 6 6 C 1.46504 * 119.99850 * 89.99417 * 5 4 2 7 7 C 1.34769 * 119.99908 * 270.00404 * 5 4 2 8 8 O 1.21282 * 120.00228 * 359.97438 * 7 5 4 9 9 C 1.50700 * 119.99960 * 179.97438 * 7 5 4 10 10 S 1.81004 * 109.47153 * 179.97438 * 9 7 5 11 11 C 1.76202 * 99.99950 * 179.97438 * 10 9 7 12 12 H 1.08001 * 120.00383 * 359.97438 * 11 10 9 13 13 C 1.38801 * 119.99939 * 180.02562 * 11 10 9 14 14 N 1.31631 * 119.99908 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99956 * 179.97438 * 13 11 10 16 16 H 1.48508 * 109.47295 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.47019 * 119.99965 * 15 13 11 18 18 H 1.48497 * 109.47395 * 239.99994 * 15 13 11 19 19 N 1.46494 * 109.47086 * 239.99848 * 2 1 3 20 20 C 1.34777 * 120.00171 * 85.00012 * 19 2 1 21 21 O 1.21276 * 119.99975 * 359.97438 * 20 19 2 22 22 C 1.50697 * 120.00086 * 179.97438 * 20 19 2 23 23 H 1.09001 * 110.28738 * 39.47635 * 22 20 19 24 24 C 1.54663 * 110.40026 * 277.47808 * 22 20 19 25 25 C 1.54628 * 101.68539 * 266.73999 * 24 22 20 26 26 C 1.51285 * 104.19604 * 334.98579 * 25 24 22 27 27 O 1.21278 * 124.94221 * 196.23381 * 26 25 24 28 28 N 1.34426 * 110.11504 * 16.24956 * 26 25 24 29 29 H 1.08999 * 109.47215 * 300.00268 * 1 2 3 30 30 H 1.08994 * 109.47047 * 60.00528 * 1 2 3 31 31 H 1.09001 * 109.46323 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47113 * 294.99996 * 4 2 1 33 33 H 1.08998 * 109.47587 * 54.99991 * 4 2 1 34 34 H 1.09003 * 109.46664 * 90.00469 * 6 5 4 35 35 H 1.09003 * 109.47068 * 210.00132 * 6 5 4 36 36 H 1.09000 * 109.47225 * 330.00517 * 6 5 4 37 37 H 1.08998 * 109.47009 * 299.99499 * 9 7 5 38 38 H 1.08998 * 109.47510 * 59.99588 * 9 7 5 39 39 H 0.96994 * 119.99708 * 179.97438 * 14 13 11 40 40 H 0.97000 * 120.00252 * 264.99681 * 19 2 1 41 41 H 1.09002 * 111.19063 * 148.56470 * 24 22 20 42 42 H 1.08994 * 110.84984 * 24.76543 * 24 22 20 43 43 H 1.08992 * 110.48523 * 216.30935 * 25 24 22 44 44 H 1.09000 * 110.59593 * 93.71880 * 25 24 22 45 45 H 0.97001 * 124.34628 * 180.40244 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 1.2492 5 7 3.5001 -0.8263 1.1906 6 6 4.3344 0.2343 1.7612 7 6 4.0758 -1.8985 0.6116 8 8 3.3852 -2.7766 0.1395 9 6 5.5777 -2.0063 0.5508 10 16 6.0389 -3.5471 -0.2797 11 6 7.7948 -3.4166 -0.2135 12 1 8.2554 -2.5558 0.2484 13 6 8.5862 -4.4197 -0.7559 14 7 8.0248 -5.4686 -1.3192 15 14 10.4477 -4.2811 -0.6864 16 1 10.8249 -3.0163 -0.0055 17 1 11.0020 -5.4334 0.0687 18 1 10.9962 -4.2836 -2.0663 19 7 2.0184 -0.6906 -1.1961 20 6 2.1471 -0.0183 -2.3571 21 8 1.8583 1.1583 -2.4117 22 6 2.6500 -0.7286 -3.5874 23 1 2.2307 -1.7333 -3.6416 24 6 4.1951 -0.7951 -3.5778 25 6 4.5680 0.4684 -4.3875 26 6 3.3568 0.7223 -5.2576 27 8 3.3409 1.4429 -6.2330 28 7 2.3006 0.0331 -4.7922 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 1.7517 -0.1582 2.1369 33 1 1.6055 -1.7197 1.2952 34 1 4.5425 0.0096 2.8073 35 1 5.2723 0.2955 1.2092 36 1 3.8090 1.1868 1.6917 37 1 5.9806 -1.1593 -0.0044 38 1 5.9835 -2.0037 1.5624 39 1 8.5779 -6.1694 -1.6986 40 1 2.2491 -1.6318 -1.1525 41 1 4.5538 -1.6966 -4.0745 42 1 4.5798 -0.7337 -2.5598 43 1 5.4475 0.2810 -5.0033 44 1 4.7428 1.3131 -3.7211 45 1 1.4196 0.0417 -5.1981 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337030605.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:31 Heat of formation + Delta-G solvation = -132.225382 kcal Electronic energy + Delta-G solvation = -28909.408352 eV Core-core repulsion = 24859.061663 eV Total energy + Delta-G solvation = -4050.346689 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.00472 -41.03645 -39.96674 -37.62909 -36.99105 -35.73510 -34.52069 -32.73632 -32.20480 -30.86247 -28.99131 -28.22065 -27.61650 -26.39858 -24.31960 -22.50302 -21.68986 -21.33902 -20.62592 -19.50147 -18.83569 -18.60950 -17.91759 -17.52123 -16.97623 -16.83271 -16.81745 -16.34233 -16.00945 -15.82550 -15.60855 -14.94470 -14.81548 -14.57901 -14.51330 -14.47973 -14.29211 -13.86335 -13.69994 -13.54203 -13.42274 -13.29164 -13.08103 -12.95632 -12.89201 -12.72511 -12.54306 -12.53094 -12.31797 -12.09880 -11.64870 -11.40189 -11.10593 -11.07811 -10.83704 -10.18536 -10.16827 -10.15895 -9.62112 -8.55237 -8.29933 -6.03652 1.32167 1.37815 1.42940 1.46343 1.50797 1.59288 1.60973 1.95763 2.18471 2.32472 2.47927 3.05309 3.26044 3.33066 3.42718 3.64254 3.76232 3.81377 3.85204 4.09487 4.16467 4.20773 4.31245 4.37273 4.41391 4.51228 4.57396 4.68308 4.73803 4.74437 4.84880 4.86304 4.96044 4.97884 5.03291 5.25485 5.43373 5.49052 5.59987 5.63484 5.85363 6.25278 6.28934 6.47587 7.06823 7.13691 7.14119 7.21445 8.78408 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.009337 B = 0.004004 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2997.966658 B = 6990.643568 C = 9132.599668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.124 3.876 3 H 0.081 0.919 4 C 0.108 3.892 5 N -0.609 5.609 6 C 0.070 3.930 7 C 0.539 3.461 8 O -0.551 6.551 9 C -0.132 4.132 10 S -0.122 6.122 11 C -0.545 4.545 12 H 0.077 0.923 13 C 0.022 3.978 14 N -0.907 5.907 15 Si 0.984 3.016 16 H -0.260 1.260 17 H -0.278 1.278 18 H -0.276 1.276 19 N -0.712 5.712 20 C 0.505 3.495 21 O -0.570 6.570 22 C 0.113 3.887 23 H 0.137 0.863 24 C -0.111 4.111 25 C -0.152 4.152 26 C 0.524 3.476 27 O -0.580 6.580 28 N -0.699 5.699 29 H 0.091 0.909 30 H 0.044 0.956 31 H 0.064 0.936 32 H 0.129 0.871 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.270 0.730 40 H 0.412 0.588 41 H 0.110 0.890 42 H 0.090 0.910 43 H 0.119 0.881 44 H 0.107 0.893 45 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.943 11.130 6.087 17.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.019 3.981 3 H 0.099 0.901 4 C -0.015 4.015 5 N -0.342 5.342 6 C -0.072 4.072 7 C 0.327 3.673 8 O -0.430 6.430 9 C -0.283 4.283 10 S 0.105 5.895 11 C -0.693 4.693 12 H 0.095 0.905 13 C -0.183 4.183 14 N -0.543 5.543 15 Si 0.808 3.192 16 H -0.184 1.184 17 H -0.203 1.203 18 H -0.201 1.201 19 N -0.367 5.367 20 C 0.289 3.711 21 O -0.449 6.449 22 C 0.003 3.997 23 H 0.155 0.845 24 C -0.149 4.149 25 C -0.192 4.192 26 C 0.312 3.688 27 O -0.460 6.460 28 N -0.353 5.353 29 H 0.110 0.890 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.147 0.853 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.111 0.889 37 H 0.121 0.879 38 H 0.117 0.883 39 H 0.079 0.921 40 H 0.252 0.748 41 H 0.128 0.872 42 H 0.108 0.892 43 H 0.137 0.863 44 H 0.125 0.875 45 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -13.040 10.889 4.872 17.673 hybrid contribution 1.556 0.425 0.285 1.638 sum -11.484 11.315 5.157 16.926 Atomic orbital electron populations 1.22054 0.93373 1.02830 1.03001 1.21546 0.95238 0.97199 0.84159 0.90125 1.21991 0.78847 1.02786 0.97869 1.47830 1.07217 1.21071 1.58126 1.22066 0.95536 0.90227 0.99361 1.19986 0.89237 0.81193 0.76897 1.90593 1.64563 1.40233 1.47580 1.23425 0.95518 1.03974 1.05425 1.85337 1.05483 1.23385 1.75248 1.23222 0.92069 1.09795 1.44242 0.90469 1.25891 1.04301 0.94074 0.94054 1.70142 1.37624 1.09544 1.37021 0.85106 0.77339 0.78621 0.78172 1.18360 1.20345 1.20147 1.46425 1.65778 1.15310 1.09199 1.21121 0.77237 0.87123 0.85571 1.90685 1.51583 1.17074 1.85544 1.21746 0.98406 0.96633 0.82894 0.84501 1.22570 0.90448 0.99182 1.02683 1.22365 0.97406 1.00068 0.99368 1.21238 0.87010 0.77184 0.83400 1.90706 1.85841 1.40009 1.29487 1.45854 1.13708 1.48394 1.27323 0.88995 0.93710 0.91713 0.85295 0.89806 0.90740 0.91133 0.88850 0.87884 0.88318 0.92142 0.74823 0.87187 0.89161 0.86309 0.87531 0.74267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.48 71.98 0.68 -1.56 16 2 C 0.12 2.16 2.88 44.99 0.13 2.29 16 3 H 0.08 1.55 7.58 -2.38 -0.02 1.54 16 4 C 0.11 1.64 5.14 86.38 0.44 2.08 16 5 N -0.61 -11.90 2.77 -846.76 -2.35 -14.25 16 6 C 0.07 0.96 10.24 127.77 1.31 2.27 16 7 C 0.54 15.56 6.99 87.66 0.61 16.17 16 8 O -0.55 -18.94 13.18 -3.04 -0.04 -18.98 16 9 C -0.13 -4.43 4.71 71.24 0.34 -4.10 16 10 S -0.12 -5.85 20.57 -56.49 -1.16 -7.02 16 11 C -0.55 -28.48 9.50 67.95 0.65 -27.84 16 12 H 0.08 3.81 7.80 -2.91 -0.02 3.79 16 13 C 0.02 1.18 5.49 84.86 0.47 1.64 16 14 N -0.91 -51.82 13.22 21.65 0.29 -51.54 16 15 Si 0.98 41.23 29.55 68.60 2.03 43.26 16 16 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 17 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 18 H -0.28 -11.31 7.11 99.48 0.71 -10.61 16 19 N -0.71 -15.40 4.48 -442.55 -1.98 -17.39 16 20 C 0.50 12.30 6.97 87.66 0.61 12.91 16 21 O -0.57 -17.42 16.24 -3.02 -0.05 -17.47 16 22 C 0.11 2.41 3.92 44.76 0.18 2.59 16 23 H 0.14 2.33 8.14 -2.39 -0.02 2.31 16 24 C -0.11 -2.47 6.71 31.72 0.21 -2.25 16 25 C -0.15 -3.59 6.85 30.59 0.21 -3.38 16 26 C 0.52 15.09 8.43 87.90 0.74 15.83 16 27 O -0.58 -21.32 18.03 -3.02 -0.05 -21.37 16 28 N -0.70 -16.46 5.47 -442.66 -2.42 -18.88 16 29 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.13 1.04 8.07 -2.39 -0.02 1.02 16 33 H 0.08 1.50 7.42 -2.39 -0.02 1.48 16 34 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.07 1.07 6.44 -2.39 -0.02 1.06 16 36 H 0.09 0.87 8.07 -2.39 -0.02 0.85 16 37 H 0.10 3.16 7.40 -2.40 -0.02 3.14 16 38 H 0.10 3.12 8.11 -2.40 -0.02 3.10 16 39 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 40 H 0.41 9.84 5.82 -92.71 -0.54 9.30 16 41 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.09 2.16 7.89 -2.39 -0.02 2.14 16 43 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 44 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 45 H 0.42 8.64 8.96 -92.71 -0.83 7.81 16 Total: -1.00 -76.49 389.18 0.49 -76.01 By element: Atomic # 1 Polarization: 31.33 SS G_CDS: -0.34 Total: 30.99 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: 6.57 Total: 16.65 kcal Atomic # 7 Polarization: -95.59 SS G_CDS: -6.47 Total: -102.06 kcal Atomic # 8 Polarization: -57.68 SS G_CDS: -0.14 Total: -57.82 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Atomic # 16 Polarization: -5.85 SS G_CDS: -1.16 Total: -7.02 kcal Total: -76.49 0.49 -76.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337030605.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.220 kcal (2) G-P(sol) polarization free energy of solvation -76.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds