Wall clock time and date at job start Wed Apr 1 2020 01:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09005 * 109.47466 * 2 1 4 4 C 1.53004 * 109.47387 * 239.99955 * 2 1 3 5 5 N 1.46495 * 109.47613 * 185.00293 * 4 2 1 6 6 C 1.46500 * 119.99656 * 270.00042 * 5 4 2 7 7 C 1.34779 * 120.00299 * 89.99809 * 5 4 2 8 8 O 1.21283 * 119.99753 * 359.97438 * 7 5 4 9 9 C 1.50701 * 119.99843 * 180.02562 * 7 5 4 10 10 S 1.81001 * 109.46896 * 179.97438 * 9 7 5 11 11 C 1.76192 * 100.00053 * 179.97438 * 10 9 7 12 12 H 1.08000 * 120.00436 * 0.02562 * 11 10 9 13 13 C 1.38805 * 119.99929 * 179.97438 * 11 10 9 14 14 N 1.31624 * 120.00253 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99752 * 179.72153 * 13 11 10 16 16 H 1.48506 * 109.46826 * 60.00667 * 15 13 11 17 17 H 1.48497 * 109.47051 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47422 * 300.00475 * 15 13 11 19 19 N 1.46501 * 109.47215 * 120.00170 * 2 1 3 20 20 C 1.34776 * 119.99619 * 274.99610 * 19 2 1 21 21 O 1.21283 * 120.00565 * 0.02562 * 20 19 2 22 22 C 1.50708 * 119.99937 * 180.02562 * 20 19 2 23 23 H 1.08994 * 110.21343 * 40.69745 * 22 20 19 24 24 C 1.54480 * 110.24235 * 278.77541 * 22 20 19 25 25 C 1.54863 * 101.65907 * 266.38757 * 24 22 20 26 26 C 1.51278 * 104.21037 * 335.19519 * 25 24 22 27 27 O 1.21283 * 124.94745 * 196.24337 * 26 25 24 28 28 N 1.34423 * 110.11351 * 16.26083 * 26 25 24 29 29 H 1.09005 * 109.47153 * 59.99851 * 1 2 3 30 30 H 1.09005 * 109.47466 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47220 * 300.00293 * 1 2 3 32 32 H 1.09002 * 109.47284 * 64.99856 * 4 2 1 33 33 H 1.09007 * 109.46601 * 305.00165 * 4 2 1 34 34 H 1.09002 * 109.46962 * 269.99660 * 6 5 4 35 35 H 1.08999 * 109.47679 * 29.99974 * 6 5 4 36 36 H 1.09010 * 109.47073 * 149.99899 * 6 5 4 37 37 H 1.08998 * 109.46989 * 60.00366 * 9 7 5 38 38 H 1.08996 * 109.47123 * 299.99392 * 9 7 5 39 39 H 0.97000 * 120.00481 * 179.97438 * 14 13 11 40 40 H 0.96998 * 120.00107 * 95.00320 * 19 2 1 41 41 H 1.09001 * 110.97519 * 24.52870 * 24 22 20 42 42 H 1.09002 * 110.97131 * 148.29945 * 24 22 20 43 43 H 1.09000 * 110.46833 * 216.51817 * 25 24 22 44 44 H 1.08998 * 110.59945 * 93.93678 * 25 24 22 45 45 H 0.97006 * 124.35002 * 180.38355 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8265 -1.1906 6 6 4.3342 0.2340 -1.7613 7 6 4.0757 -1.8988 -0.6116 8 8 3.3850 -2.7764 -0.1387 9 6 5.5776 -2.0066 -0.5508 10 16 6.0387 -3.5467 0.2810 11 6 7.7945 -3.4172 0.2133 12 1 8.2552 -2.5571 -0.2499 13 6 8.5858 -4.4201 0.7562 14 7 8.0245 -5.4681 1.3211 15 14 10.4474 -4.2865 0.6774 16 1 10.8861 -3.0589 1.3887 17 1 11.0568 -5.4772 1.3224 18 1 10.8792 -4.2174 -0.7417 19 7 2.0183 -0.6906 1.1961 20 6 2.1470 -0.0182 2.3571 21 8 1.8582 1.1584 2.4117 22 6 2.6500 -0.7285 3.5875 23 1 3.4658 -1.4024 3.3263 24 6 1.5014 -1.5144 4.2580 25 6 0.9888 -0.4907 5.3009 26 6 2.1811 0.4036 5.5605 27 8 2.2939 1.1537 6.5068 28 7 3.0972 0.2461 4.5894 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.7516 -0.1584 -2.1370 33 1 1.6053 -1.7199 -1.2951 34 1 4.5424 0.0092 -2.8074 35 1 3.8090 1.1866 -1.6919 36 1 5.2722 0.2952 -1.2092 37 1 5.9805 -1.1596 0.0044 38 1 5.9833 -2.0042 -1.5624 39 1 8.5775 -6.1691 1.7002 40 1 2.2490 -1.6318 1.1526 41 1 0.7230 -1.7601 3.5356 42 1 1.8769 -2.4140 4.7457 43 1 0.6863 -0.9985 6.2167 44 1 0.1593 0.0880 4.8946 45 1 3.9448 0.7166 4.5551 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337030607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:34 Heat of formation + Delta-G solvation = -133.397861 kcal Electronic energy + Delta-G solvation = -28568.134764 eV Core-core repulsion = 24517.737233 eV Total energy + Delta-G solvation = -4050.397532 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.99273 -41.05963 -39.96710 -37.62380 -36.99919 -35.75417 -34.56418 -32.72124 -32.19392 -30.89718 -28.98654 -28.24356 -27.65897 -26.41200 -24.29323 -22.55183 -21.63874 -21.32630 -20.66006 -19.53937 -18.82025 -18.63034 -17.92718 -17.52311 -17.04456 -16.87416 -16.84808 -16.27476 -15.95847 -15.93158 -15.68416 -14.85070 -14.75220 -14.62481 -14.54694 -14.50881 -14.33939 -13.87715 -13.73110 -13.52338 -13.45339 -13.31838 -13.13819 -12.94545 -12.87686 -12.73013 -12.59775 -12.52386 -12.27863 -12.09177 -11.71696 -11.39625 -11.11767 -11.07024 -10.87374 -10.24797 -10.17266 -10.16176 -9.64423 -8.60927 -8.33591 -6.08728 1.27938 1.38176 1.42735 1.46818 1.48417 1.55045 1.56903 1.97311 2.15446 2.29016 2.48049 3.01073 3.26167 3.28479 3.43025 3.64531 3.72864 3.81390 3.88063 4.13367 4.17503 4.18682 4.27458 4.38888 4.41707 4.50705 4.52355 4.66098 4.72311 4.75519 4.85219 4.85744 4.93017 4.97432 5.03795 5.27330 5.43121 5.43738 5.59188 5.62558 5.87539 6.20471 6.25108 6.47743 7.05937 7.09284 7.11794 7.19774 8.74492 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.009505 B = 0.003573 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2945.234444 B = 7834.317138 C = 9831.089442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.124 3.876 3 H 0.078 0.922 4 C 0.107 3.893 5 N -0.609 5.609 6 C 0.071 3.929 7 C 0.539 3.461 8 O -0.550 6.550 9 C -0.132 4.132 10 S -0.125 6.125 11 C -0.551 4.551 12 H 0.077 0.923 13 C 0.021 3.979 14 N -0.906 5.906 15 Si 0.987 3.013 16 H -0.265 1.265 17 H -0.279 1.279 18 H -0.264 1.264 19 N -0.711 5.711 20 C 0.505 3.495 21 O -0.571 6.571 22 C 0.105 3.895 23 H 0.122 0.878 24 C -0.110 4.110 25 C -0.148 4.148 26 C 0.517 3.483 27 O -0.584 6.584 28 N -0.705 5.705 29 H 0.090 0.910 30 H 0.067 0.933 31 H 0.046 0.954 32 H 0.130 0.870 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.067 0.933 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.271 0.729 40 H 0.412 0.588 41 H 0.111 0.889 42 H 0.117 0.883 43 H 0.127 0.873 44 H 0.111 0.889 45 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.863 10.130 -5.450 18.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.018 3.982 3 H 0.096 0.904 4 C -0.015 4.015 5 N -0.342 5.342 6 C -0.072 4.072 7 C 0.327 3.673 8 O -0.429 6.429 9 C -0.283 4.283 10 S 0.102 5.898 11 C -0.699 4.699 12 H 0.095 0.905 13 C -0.184 4.184 14 N -0.542 5.542 15 Si 0.809 3.191 16 H -0.190 1.190 17 H -0.204 1.204 18 H -0.189 1.189 19 N -0.367 5.367 20 C 0.290 3.710 21 O -0.450 6.450 22 C -0.005 4.005 23 H 0.139 0.861 24 C -0.147 4.147 25 C -0.188 4.188 26 C 0.306 3.694 27 O -0.465 6.465 28 N -0.358 5.358 29 H 0.109 0.891 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.147 0.853 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.112 0.888 36 H 0.086 0.914 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.080 0.920 40 H 0.252 0.748 41 H 0.130 0.870 42 H 0.136 0.864 43 H 0.145 0.855 44 H 0.129 0.871 45 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -16.105 9.838 -4.197 19.333 hybrid contribution 2.721 0.852 -0.540 2.902 sum -13.384 10.690 -4.737 17.772 Atomic orbital electron populations 1.22053 0.93026 1.03038 1.03091 1.21551 0.95502 0.97026 0.84105 0.90414 1.22023 0.78638 1.02916 0.97960 1.47828 1.07357 1.20959 1.58079 1.22057 0.95454 0.90274 0.99371 1.19954 0.89142 0.81282 0.76962 1.90585 1.64485 1.40262 1.47525 1.23420 0.95772 1.03747 1.05392 1.85290 1.05658 1.23494 1.75354 1.23170 0.92022 1.10070 1.44644 0.90499 1.25941 1.04584 0.93986 0.93896 1.70127 1.37909 1.09486 1.36725 0.85168 0.76845 0.78056 0.78989 1.19019 1.20438 1.18891 1.46422 1.65916 1.15295 1.09071 1.21134 0.77355 0.87078 0.85457 1.90684 1.51570 1.17151 1.85594 1.21772 1.01024 0.90467 0.87199 0.86075 1.22717 0.96033 0.97895 0.98095 1.22421 0.96115 0.97335 1.02915 1.21511 0.85680 0.81742 0.80509 1.90709 1.80608 1.42069 1.33120 1.45988 1.21221 1.44683 1.23914 0.89098 0.91404 0.93463 0.85256 0.89608 0.90592 0.88822 0.91431 0.88314 0.88134 0.92015 0.74819 0.87027 0.86432 0.85500 0.87122 0.74904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.48 71.98 0.68 -1.43 16 2 C 0.12 2.15 2.88 44.99 0.13 2.28 16 3 H 0.08 1.53 7.58 -2.38 -0.02 1.52 16 4 C 0.11 1.65 5.14 86.38 0.44 2.09 16 5 N -0.61 -12.42 2.77 -846.73 -2.35 -14.77 16 6 C 0.07 1.03 10.24 127.77 1.31 2.34 16 7 C 0.54 16.20 6.99 87.66 0.61 16.81 16 8 O -0.55 -19.34 13.18 -3.04 -0.04 -19.38 16 9 C -0.13 -4.65 4.71 71.24 0.34 -4.32 16 10 S -0.13 -6.24 20.57 -56.49 -1.16 -7.40 16 11 C -0.55 -29.67 9.50 67.96 0.65 -29.03 16 12 H 0.08 3.89 7.80 -2.91 -0.02 3.87 16 13 C 0.02 1.16 5.49 84.86 0.47 1.63 16 14 N -0.91 -52.70 13.22 21.65 0.29 -52.41 16 15 Si 0.99 41.91 29.55 68.60 2.03 43.94 16 16 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 17 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 18 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 19 N -0.71 -15.44 4.48 -442.52 -1.98 -17.42 16 20 C 0.50 12.41 6.97 87.66 0.61 13.02 16 21 O -0.57 -17.62 16.23 -3.04 -0.05 -17.67 16 22 C 0.10 2.28 3.92 44.70 0.18 2.46 16 23 H 0.12 2.66 8.14 -2.39 -0.02 2.64 16 24 C -0.11 -1.72 6.71 31.73 0.21 -1.51 16 25 C -0.15 -2.71 6.86 30.67 0.21 -2.50 16 26 C 0.52 14.38 8.43 87.90 0.74 15.12 16 27 O -0.58 -21.26 18.03 -3.04 -0.05 -21.32 16 28 N -0.71 -17.83 5.46 -442.98 -2.42 -20.25 16 29 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 30 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.13 1.06 8.07 -2.39 -0.02 1.05 16 33 H 0.09 1.52 7.42 -2.38 -0.02 1.50 16 34 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.09 0.96 8.07 -2.39 -0.02 0.94 16 36 H 0.07 1.13 6.44 -2.38 -0.02 1.11 16 37 H 0.10 3.26 7.40 -2.40 -0.02 3.25 16 38 H 0.10 3.31 8.11 -2.40 -0.02 3.29 16 39 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 40 H 0.41 9.86 5.82 -92.71 -0.54 9.32 16 41 H 0.11 1.41 7.89 -2.39 -0.02 1.39 16 42 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.41 10.29 8.96 -92.70 -0.83 9.46 16 Total: -1.00 -79.37 389.16 0.49 -78.88 By element: Atomic # 1 Polarization: 31.17 SS G_CDS: -0.34 Total: 30.82 kcal Atomic # 6 Polarization: 10.40 SS G_CDS: 6.58 Total: 16.97 kcal Atomic # 7 Polarization: -98.39 SS G_CDS: -6.46 Total: -104.86 kcal Atomic # 8 Polarization: -58.22 SS G_CDS: -0.14 Total: -58.36 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Atomic # 16 Polarization: -6.24 SS G_CDS: -1.16 Total: -7.40 kcal Total: -79.37 0.49 -78.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337030607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.518 kcal (2) G-P(sol) polarization free energy of solvation -79.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds