Wall clock time and date at job start Wed Apr 1 2020 01:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46825 * 2 1 4 4 C 1.50695 * 109.47156 * 119.99847 * 2 1 3 5 5 H 1.07997 * 120.00156 * 120.00282 * 4 2 1 6 6 C 1.37879 * 120.00182 * 300.00407 * 4 2 1 7 7 N 1.31519 * 119.99724 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00253 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47140 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47413 * 119.99665 * 8 6 4 11 11 H 1.48494 * 109.47236 * 239.99863 * 8 6 4 12 12 N 1.46897 * 109.47357 * 240.00209 * 2 1 3 13 13 C 1.46907 * 110.99898 * 183.95450 * 12 2 1 14 14 C 1.38298 * 111.00256 * 59.99801 * 12 2 1 15 15 N 1.31477 * 126.36405 * 359.97438 * 14 12 2 16 16 N 1.28525 * 110.05223 * 180.02562 * 15 14 12 17 17 C 1.31244 * 109.91963 * 359.97438 * 16 15 14 18 18 C 1.47913 * 126.46660 * 179.97438 * 17 16 15 19 19 C 1.41927 * 126.83981 * 0.29786 * 18 17 16 20 20 C 1.36986 * 103.80555 * 180.10670 * 19 18 17 21 21 C 1.47040 * 126.82276 * 179.91350 * 20 19 18 22 22 C 1.36318 * 125.96183 * 179.71401 * 21 20 19 23 23 C 1.40708 * 106.72019 * 179.97438 * 22 21 20 24 24 C 1.34880 * 107.08083 * 359.97438 * 23 22 21 25 25 O 1.34224 * 108.72862 * 0.24819 * 24 23 22 26 26 O 1.34636 * 106.34860 * 359.64624 * 20 19 18 27 27 N 1.20872 * 111.74236 * 0.24228 * 26 20 19 28 28 N 1.36347 * 126.36864 * 180.27162 * 14 12 2 29 29 C 1.46503 * 127.15478 * 0.02562 * 28 14 12 30 30 H 1.09002 * 109.47055 * 60.00210 * 1 2 3 31 31 H 1.08998 * 109.46522 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47056 * 299.99894 * 1 2 3 33 33 H 0.97001 * 119.99510 * 180.02562 * 7 6 4 34 34 H 1.08999 * 109.46990 * 296.04084 * 13 12 2 35 35 H 1.08994 * 109.47128 * 56.04817 * 13 12 2 36 36 H 1.09001 * 109.46853 * 176.04420 * 13 12 2 37 37 H 1.08003 * 128.09706 * 0.03764 * 19 18 17 38 38 H 1.08005 * 126.64272 * 359.97438 * 22 21 20 39 39 H 1.08003 * 126.45929 * 180.02562 * 23 22 21 40 40 H 1.08002 * 125.63350 * 179.97438 * 24 23 22 41 41 H 1.09001 * 109.46863 * 270.13798 * 29 28 14 42 42 H 1.08997 * 109.47189 * 30.13707 * 29 28 14 43 43 H 1.08996 * 109.46698 * 150.14309 * 29 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2304 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9434 0.8302 2.6034 8 14 2.3213 -1.1203 4.0079 9 1 3.1465 -2.2869 3.6038 10 1 3.1465 -0.1873 4.8165 11 1 1.1660 -1.5866 4.8160 12 7 2.0197 -0.6924 -1.1994 13 6 3.4852 -0.7944 -1.1869 14 6 1.5763 -0.0653 -2.3495 15 7 0.8176 1.0067 -2.4099 16 7 0.5951 1.3207 -3.6362 17 6 1.1982 0.4692 -4.4322 18 6 1.1847 0.4873 -5.9112 19 6 0.5250 1.4277 -6.7447 20 6 0.8191 1.0029 -8.0134 21 6 0.3813 1.6213 -9.2735 22 6 0.6894 1.1863 -10.5282 23 6 0.0638 2.0691 -11.4277 24 6 -0.5892 2.9899 -10.6896 25 8 -0.3912 2.7197 -9.3898 26 8 1.5935 -0.0900 -7.8771 27 7 1.7854 -0.3607 -6.7148 28 7 1.8400 -0.4472 -3.6316 29 6 2.6420 -1.5936 -4.0662 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 0.7094 1.1618 3.4844 34 1 3.9193 0.2045 -1.2300 35 1 3.8070 -1.2915 -0.2719 36 1 3.8165 -1.3720 -2.0499 37 1 -0.0705 2.2785 -6.4482 38 1 1.2961 0.3297 -10.7825 39 1 0.0991 2.0183 -12.5060 40 1 -1.1712 3.8117 -11.0799 41 1 3.6829 -1.2888 -4.1741 42 1 2.5713 -2.3887 -3.3240 43 1 2.2684 -1.9561 -5.0238 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341583414.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:50:35 Heat of formation + Delta-G solvation = 197.105288 kcal Electronic energy + Delta-G solvation = -29014.964809 eV Core-core repulsion = 24875.747769 eV Total energy + Delta-G solvation = -4139.217040 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.20993 -42.98416 -42.55925 -37.31774 -35.09266 -34.44175 -33.74675 -33.03814 -32.69583 -29.55929 -29.31745 -29.12795 -27.66514 -25.67795 -24.47517 -24.28290 -23.56821 -22.31016 -21.81739 -21.68492 -20.13023 -19.63298 -18.73400 -18.06491 -16.96411 -16.82717 -16.45419 -16.37119 -16.08794 -15.57096 -15.40484 -14.66856 -14.60319 -14.04110 -14.01581 -13.44767 -13.38707 -13.23202 -13.20352 -12.93482 -12.80783 -12.44761 -12.04528 -11.83601 -11.36844 -11.27756 -11.07036 -10.90053 -10.88861 -10.62694 -10.49725 -10.33519 -10.26338 -10.09366 -10.03126 -9.69376 -9.40258 -8.69050 -8.58155 -8.48498 -7.46465 -6.08638 -4.17017 0.30542 1.10968 1.67803 1.75442 2.31005 2.39860 2.54687 3.25187 3.29752 3.31714 3.33155 3.35702 3.46736 3.91600 4.25682 4.45563 4.48959 4.50255 4.57841 4.74761 4.87453 4.94850 5.14561 5.23065 5.30667 5.36618 5.39615 5.47100 5.55039 5.59545 5.68627 5.90480 5.92269 5.96298 6.16739 6.36294 6.51562 6.63892 6.95139 7.07974 7.29068 7.37841 7.58623 7.68870 7.76780 7.91075 8.23556 8.35512 8.83265 9.10379 9.47720 10.97444 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.033570 B = 0.002100 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.878987 B =13327.828745 C =14004.854595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.228 3.772 3 H 0.024 0.976 4 C -0.519 4.519 5 H 0.066 0.934 6 C 0.064 3.936 7 N -0.881 5.881 8 Si 0.901 3.099 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.451 5.451 13 C 0.031 3.969 14 C 0.405 3.595 15 N -0.305 5.305 16 N -0.238 5.238 17 C 0.192 3.808 18 C 0.125 3.875 19 C -0.159 4.159 20 C 0.036 3.964 21 C 0.046 3.954 22 C -0.160 4.160 23 C -0.215 4.215 24 C -0.015 4.015 25 O -0.157 6.157 26 O 0.129 5.871 27 N -0.351 5.351 28 N -0.480 5.480 29 C 0.079 3.921 30 H 0.045 0.955 31 H 0.024 0.976 32 H 0.089 0.911 33 H 0.263 0.737 34 H 0.032 0.968 35 H 0.102 0.898 36 H 0.052 0.948 37 H 0.189 0.811 38 H 0.160 0.840 39 H 0.157 0.843 40 H 0.213 0.787 41 H 0.076 0.924 42 H 0.096 0.904 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.168 0.257 -26.939 26.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.125 3.875 3 H 0.042 0.958 4 C -0.558 4.558 5 H 0.084 0.916 6 C -0.139 4.139 7 N -0.519 5.519 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.175 5.175 13 C -0.116 4.116 14 C 0.050 3.950 15 N -0.153 5.153 16 N -0.083 5.083 17 C -0.072 4.072 18 C -0.032 4.032 19 C -0.181 4.181 20 C -0.027 4.027 21 C -0.005 4.005 22 C -0.180 4.180 23 C -0.234 4.234 24 C -0.083 4.083 25 O -0.052 6.052 26 O 0.058 5.942 27 N -0.054 5.054 28 N -0.176 5.176 29 C -0.064 4.064 30 H 0.064 0.936 31 H 0.043 0.957 32 H 0.107 0.893 33 H 0.073 0.927 34 H 0.051 0.949 35 H 0.120 0.880 36 H 0.070 0.930 37 H 0.206 0.794 38 H 0.177 0.823 39 H 0.174 0.826 40 H 0.229 0.771 41 H 0.095 0.905 42 H 0.115 0.885 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.778 0.086 -25.789 25.801 hybrid contribution 0.889 -0.424 0.366 1.051 sum 1.667 -0.337 -25.423 25.479 Atomic orbital electron populations 1.22000 0.96384 0.99426 1.02523 1.19448 0.93722 0.92487 0.81840 0.95830 1.21077 1.32377 1.12886 0.89462 0.91609 1.24908 0.94950 0.95017 0.99009 1.69937 1.35820 1.22460 1.23660 0.86398 0.78604 0.79479 0.82645 1.19736 1.20989 1.20886 1.58988 1.10921 1.47953 0.99635 1.22480 0.84783 1.00839 1.03496 1.23274 0.97118 0.90596 0.83971 1.75028 1.19957 1.10667 1.09648 1.74299 1.17128 1.20288 0.96626 1.20568 1.03857 0.93929 0.88846 1.19920 0.98823 0.94197 0.90235 1.22694 1.03923 1.02515 0.88987 1.20354 0.99048 0.91397 0.91940 1.18063 1.01021 0.90821 0.90591 1.21986 1.03209 1.02227 0.90546 1.21823 1.02894 0.97414 1.01287 1.24364 1.02887 1.01936 0.79146 1.84083 1.54656 1.37787 1.28678 1.84926 1.51695 1.36142 1.21486 1.74183 1.20905 1.21472 0.88796 1.45995 1.41478 1.24404 1.05766 1.22151 0.94988 0.86807 1.02495 0.93615 0.95678 0.89281 0.92701 0.94907 0.87970 0.92954 0.79366 0.82266 0.82556 0.77067 0.90534 0.88528 0.88976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.78 8.77 37.16 0.33 -3.45 16 2 C 0.23 5.84 1.72 -68.87 -0.12 5.73 16 3 H 0.02 0.68 8.11 -51.93 -0.42 0.26 16 4 C -0.52 -13.75 7.88 -34.44 -0.27 -14.02 16 5 H 0.07 1.68 6.40 -52.49 -0.34 1.34 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.88 -24.94 11.32 55.43 0.63 -24.31 16 8 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 9 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 N -0.45 -9.82 4.68 -176.13 -0.82 -10.65 16 13 C 0.03 0.56 9.08 60.07 0.55 1.11 16 14 C 0.41 8.58 6.74 -319.10 -2.15 6.43 16 15 N -0.31 -7.04 8.98 30.28 0.27 -6.76 16 16 N -0.24 -4.96 12.23 32.61 0.40 -4.56 16 17 C 0.19 3.46 7.96 -153.74 -1.22 2.24 16 18 C 0.12 1.85 7.13 -82.69 -0.59 1.26 16 19 C -0.16 -1.99 11.13 -38.62 -0.43 -2.42 16 20 C 0.04 0.39 7.29 -36.47 -0.27 0.13 16 21 C 0.05 0.43 7.17 -36.71 -0.26 0.17 16 22 C -0.16 -1.19 10.86 -39.34 -0.43 -1.61 16 23 C -0.22 -1.23 10.88 -39.84 -0.43 -1.67 16 24 C -0.01 -0.08 12.08 29.54 0.36 0.27 16 25 O -0.16 -1.39 10.67 4.57 0.05 -1.34 16 26 O 0.13 1.48 11.21 15.57 0.17 1.66 16 27 N -0.35 -4.68 10.41 33.34 0.35 -4.33 16 28 N -0.48 -8.51 3.23 -122.08 -0.39 -8.90 16 29 C 0.08 1.03 9.13 59.85 0.55 1.58 16 30 H 0.05 1.17 5.42 -51.93 -0.28 0.89 16 31 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16 33 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 34 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.10 1.89 6.10 -51.93 -0.32 1.58 16 36 H 0.05 0.76 5.41 -51.93 -0.28 0.48 16 37 H 0.19 2.14 8.06 -52.48 -0.42 1.72 16 38 H 0.16 0.91 8.06 -52.48 -0.42 0.49 16 39 H 0.16 0.50 8.06 -52.48 -0.42 0.08 16 40 H 0.21 0.34 8.06 -52.49 -0.42 -0.09 16 41 H 0.08 0.87 7.83 -51.93 -0.41 0.46 16 42 H 0.10 1.21 7.59 -51.93 -0.39 0.81 16 43 H 0.09 1.11 6.72 -51.93 -0.35 0.77 16 LS Contribution 363.17 15.07 5.47 5.47 Total: -1.00 -32.35 363.17 -8.16 -40.51 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -4.77 Total: 0.14 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: -4.49 Total: -2.61 kcal Atomic # 7 Polarization: -59.94 SS G_CDS: 0.43 Total: -59.51 kcal Atomic # 8 Polarization: 0.09 SS G_CDS: 0.22 Total: 0.31 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.35 -8.16 -40.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341583414.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 237.614 kcal (2) G-P(sol) polarization free energy of solvation -32.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 205.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 197.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds