Wall clock time and date at job start Wed Apr 1 2020 02:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.46904 * 2 1 4 4 C 1.46766 * 124.35383 * 90.00152 * 3 2 1 5 5 C 1.54480 * 105.47721 * 162.95904 * 4 3 2 6 6 H 1.08998 * 110.96692 * 267.25738 * 5 4 3 7 7 C 1.50698 * 110.96808 * 143.52948 * 5 4 3 8 8 O 1.21283 * 120.00472 * 3.09282 * 7 5 4 9 9 N 1.34777 * 119.99538 * 183.08619 * 7 5 4 10 10 C 1.46499 * 119.99665 * 179.72653 * 9 7 5 11 11 C 1.53004 * 109.47198 * 180.27868 * 10 9 7 12 12 N 1.46499 * 109.47198 * 179.97438 * 11 10 9 13 13 C 1.34777 * 120.00065 * 180.02562 * 12 11 10 14 14 O 1.21283 * 119.99645 * 359.97438 * 13 12 11 15 15 C 1.50700 * 120.00075 * 180.02562 * 13 12 11 16 16 S 1.81004 * 109.46908 * 179.97438 * 15 13 12 17 17 C 1.76202 * 99.99819 * 180.02562 * 16 15 13 18 18 H 1.08007 * 119.99752 * 359.97438 * 17 16 15 19 19 C 1.38793 * 119.99846 * 180.02562 * 17 16 15 20 20 N 1.31624 * 120.00284 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99825 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47385 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46850 * 120.00212 * 21 19 17 24 24 H 1.48500 * 109.47389 * 240.00071 * 21 19 17 25 25 C 1.54630 * 101.79585 * 25.39326 * 5 4 3 26 26 C 1.34420 * 124.34788 * 269.96968 * 3 2 1 27 27 O 1.21280 * 124.94330 * 0.41553 * 26 3 2 28 28 H 1.09004 * 109.47116 * 60.00609 * 1 2 3 29 29 H 1.08999 * 109.47294 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47357 * 300.00491 * 1 2 3 31 31 H 1.08998 * 109.47357 * 239.99509 * 2 1 3 32 32 H 1.09004 * 109.47116 * 119.99391 * 2 1 3 33 33 H 1.08997 * 110.24646 * 43.95160 * 4 3 2 34 34 H 1.09005 * 110.31591 * 281.99761 * 4 3 2 35 35 H 0.97001 * 120.00485 * 0.02562 * 9 7 5 36 36 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 37 37 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 38 38 H 1.08995 * 109.46638 * 300.00121 * 11 10 9 39 39 H 1.09006 * 109.47139 * 60.00254 * 11 10 9 40 40 H 0.97000 * 120.00386 * 359.97438 * 12 11 10 41 41 H 1.08994 * 109.46850 * 299.99690 * 15 13 12 42 42 H 1.08998 * 109.47115 * 59.99614 * 15 13 12 43 43 H 0.97003 * 120.00379 * 179.97438 * 20 19 17 44 44 H 1.09001 * 110.48679 * 93.90232 * 25 5 4 45 45 H 1.09000 * 110.48802 * 216.53820 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2943 2.1620 1.2117 5 6 3.1749 3.3439 0.7487 6 1 4.2334 3.1030 0.8457 7 6 2.8379 4.5988 1.5121 8 8 2.0110 4.5658 2.3987 9 7 3.4558 5.7578 1.2096 10 6 3.1240 6.9790 1.9477 11 6 3.9556 8.1438 1.4067 12 7 3.6233 9.3651 2.1443 13 6 4.2365 10.5255 1.8377 14 8 5.0638 10.5584 0.9515 15 6 3.8951 11.7817 2.5969 16 16 4.8789 13.1596 1.9567 17 6 4.2954 14.4596 2.9932 18 1 3.5454 14.2567 3.7435 19 6 4.7987 15.7445 2.8447 20 7 5.7123 15.9919 1.9300 21 14 4.1796 17.1229 3.9431 22 1 3.1618 16.5878 4.8828 23 1 5.3153 17.6894 4.7142 24 1 3.5699 18.1871 3.1058 25 6 2.7712 3.4754 -0.7381 26 6 2.2716 2.0961 -1.1098 27 8 2.1224 1.6939 -2.2442 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.8319 1.5531 1.9385 34 1 1.3643 2.5313 1.6440 35 1 4.1170 5.7843 0.5004 36 1 2.0639 7.2014 1.8245 37 1 3.3446 6.8356 3.0055 38 1 5.0154 7.9214 1.5299 39 1 3.7349 8.2873 0.3489 40 1 2.9614 9.3389 2.8529 41 1 2.8351 12.0037 2.4741 42 1 4.1162 11.6385 3.6546 43 1 6.0638 16.8900 1.8259 44 1 1.9768 4.2128 -0.8540 45 1 3.6350 3.7455 -1.3455 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348504789.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:11:59 Heat of formation + Delta-G solvation = -141.756245 kcal Electronic energy + Delta-G solvation = -25969.428557 eV Core-core repulsion = 21918.668579 eV Total energy + Delta-G solvation = -4050.759978 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.90527 -40.70835 -40.27089 -37.54188 -36.89371 -35.17575 -34.77917 -34.57191 -31.75634 -30.78347 -29.12810 -28.68632 -27.63414 -25.22115 -24.02245 -23.26412 -21.94359 -21.17358 -20.41996 -19.85625 -18.75460 -17.95791 -17.75771 -17.32790 -17.00052 -16.87200 -16.74804 -16.69023 -16.24971 -16.17881 -15.68105 -15.35085 -14.97364 -14.79744 -14.66735 -14.54269 -14.43073 -14.37156 -14.05153 -13.61869 -13.25492 -13.14712 -12.96736 -12.92450 -12.85847 -12.80046 -12.58590 -12.50522 -12.38553 -12.02212 -11.70438 -11.27114 -11.14944 -11.01593 -10.80285 -10.25907 -10.24053 -10.10908 -9.79539 -8.64936 -8.34033 -6.11472 1.26261 1.42159 1.45013 1.45986 1.51797 1.57062 1.61077 1.78580 2.04590 2.28058 2.54591 3.00617 3.16482 3.30747 3.34577 3.62475 3.77716 3.87761 4.02977 4.05480 4.09292 4.17441 4.23310 4.33336 4.43714 4.45306 4.53770 4.54656 4.61658 4.73768 4.79429 4.86028 4.90746 4.91660 4.93008 5.22979 5.26956 5.41897 5.43670 5.53012 6.03748 6.21117 6.41778 6.48675 7.05516 7.08020 7.13900 7.22539 8.75343 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.037364 B = 0.001384 C = 0.001358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.204408 B =20232.343405 C =20611.680478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.116 3.884 3 N -0.616 5.616 4 C 0.115 3.885 5 C -0.110 4.110 6 H 0.154 0.846 7 C 0.532 3.468 8 O -0.569 6.569 9 N -0.712 5.712 10 C 0.119 3.881 11 C 0.113 3.887 12 N -0.712 5.712 13 C 0.537 3.463 14 O -0.562 6.562 15 C -0.131 4.131 16 S -0.151 6.151 17 C -0.546 4.546 18 H 0.083 0.917 19 C 0.015 3.985 20 N -0.911 5.911 21 Si 0.997 3.003 22 H -0.257 1.257 23 H -0.274 1.274 24 H -0.275 1.275 25 C -0.139 4.139 26 C 0.508 3.492 27 O -0.579 6.579 28 H 0.034 0.966 29 H 0.085 0.915 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.078 0.922 35 H 0.419 0.581 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.418 0.582 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.271 0.729 44 H 0.109 0.891 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.017 -32.766 1.940 33.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.006 4.006 3 N -0.349 5.349 4 C -0.007 4.007 5 C -0.131 4.131 6 H 0.171 0.829 7 C 0.318 3.682 8 O -0.448 6.448 9 N -0.365 5.365 10 C -0.005 4.005 11 C -0.011 4.011 12 N -0.367 5.367 13 C 0.323 3.677 14 O -0.440 6.440 15 C -0.283 4.283 16 S 0.076 5.924 17 C -0.694 4.694 18 H 0.101 0.899 19 C -0.190 4.190 20 N -0.548 5.548 21 Si 0.819 3.181 22 H -0.180 1.180 23 H -0.200 1.200 24 H -0.200 1.200 25 C -0.179 4.179 26 C 0.297 3.703 27 O -0.459 6.459 28 H 0.053 0.947 29 H 0.103 0.897 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.096 0.904 35 H 0.257 0.743 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.256 0.744 41 H 0.129 0.871 42 H 0.129 0.871 43 H 0.080 0.920 44 H 0.127 0.873 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.240 -32.935 0.461 33.725 hybrid contribution -1.174 1.061 1.241 2.011 sum -8.414 -31.875 1.702 33.010 Atomic orbital electron populations 1.22128 0.95672 1.03246 1.01448 1.21534 0.94539 0.80368 1.04112 1.48529 1.64780 1.14414 1.07200 1.22073 1.00396 0.91580 0.86674 1.22223 1.04614 0.92326 0.93966 0.82856 1.20341 0.80100 0.84812 0.82968 1.90749 1.34700 1.86091 1.33267 1.45661 1.43952 1.07629 1.39275 1.21302 0.99572 0.82713 0.96925 1.21417 1.00068 0.82904 0.96729 1.45509 1.44284 1.07098 1.39814 1.19983 0.80307 0.84716 0.82706 1.90703 1.34504 1.86025 1.32775 1.23382 1.05344 0.95638 1.03908 1.85552 1.55144 1.01250 1.50427 1.23249 1.28213 0.95643 1.22287 0.89889 1.26089 0.94701 1.01030 0.97194 1.70179 1.28338 1.22439 1.33812 0.84929 0.78360 0.76995 0.77811 1.18040 1.19990 1.20031 1.22379 1.05173 0.94816 0.95534 1.21322 0.76457 0.88433 0.84099 1.90722 1.55951 1.76233 1.22985 0.94674 0.89658 0.92023 0.90987 0.87310 0.87259 0.90419 0.74326 0.90517 0.90166 0.90747 0.90963 0.74440 0.87128 0.87051 0.92011 0.87302 0.84778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.65 10.24 71.98 0.74 -0.91 16 2 C 0.12 1.08 6.65 86.38 0.57 1.66 16 3 N -0.62 -7.08 2.93 -817.91 -2.40 -9.48 16 4 C 0.12 0.88 6.69 86.83 0.58 1.46 16 5 C -0.11 -0.59 3.54 -10.48 -0.04 -0.63 16 6 H 0.15 -0.06 8.14 -2.39 -0.02 -0.08 16 7 C 0.53 5.60 7.06 87.66 0.62 6.22 16 8 O -0.57 -10.67 15.53 -3.04 -0.05 -10.72 16 9 N -0.71 -5.62 5.54 -463.05 -2.57 -8.18 16 10 C 0.12 1.31 5.79 86.38 0.50 1.81 16 11 C 0.11 1.76 5.79 86.38 0.50 2.26 16 12 N -0.71 -14.69 5.56 -463.05 -2.57 -17.26 16 13 C 0.54 17.91 7.85 87.66 0.69 18.59 16 14 O -0.56 -24.00 15.86 -3.04 -0.05 -24.05 16 15 C -0.13 -4.87 6.16 71.24 0.44 -4.44 16 16 S -0.15 -8.12 20.57 -56.49 -1.16 -9.28 16 17 C -0.55 -30.53 9.50 67.95 0.65 -29.89 16 18 H 0.08 4.31 7.80 -2.91 -0.02 4.28 16 19 C 0.01 0.82 5.49 84.86 0.47 1.29 16 20 N -0.91 -55.17 13.22 21.65 0.29 -54.88 16 21 Si 1.00 42.91 29.55 68.60 2.03 44.94 16 22 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 23 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 24 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 25 C -0.14 -1.10 6.40 30.61 0.20 -0.90 16 26 C 0.51 8.18 8.02 87.92 0.71 8.88 16 27 O -0.58 -14.82 17.59 -3.03 -0.05 -14.88 16 28 H 0.03 0.52 8.14 -2.38 -0.02 0.50 16 29 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.07 0.86 7.93 -2.39 -0.02 0.84 16 32 H 0.11 0.40 8.14 -2.38 -0.02 0.38 16 33 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 34 H 0.08 0.88 7.00 -2.38 -0.02 0.86 16 35 H 0.42 1.28 8.47 -92.71 -0.79 0.49 16 36 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 37 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.07 1.22 8.14 -2.39 -0.02 1.21 16 39 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 40 H 0.42 5.96 8.47 -92.71 -0.79 5.17 16 41 H 0.11 3.67 8.14 -2.40 -0.02 3.65 16 42 H 0.11 3.68 8.14 -2.40 -0.02 3.66 16 43 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 44 H 0.11 0.94 7.89 -2.39 -0.02 0.92 16 45 H 0.13 0.53 8.14 -2.39 -0.02 0.51 16 Total: -1.00 -87.85 398.60 -0.47 -88.32 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -0.55 Total: 10.06 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: 6.61 Total: 5.41 kcal Atomic # 7 Polarization: -82.55 SS G_CDS: -7.25 Total: -89.81 kcal Atomic # 8 Polarization: -49.49 SS G_CDS: -0.15 Total: -49.64 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Atomic # 16 Polarization: -8.12 SS G_CDS: -1.16 Total: -9.28 kcal Total: -87.85 -0.47 -88.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348504789.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.436 kcal (2) G-P(sol) polarization free energy of solvation -87.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds