Wall clock time and date at job start Wed Apr 1 2020 01:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08993 * 109.47307 * 2 1 4 4 N 1.46500 * 109.46956 * 240.00293 * 2 1 3 5 5 C 1.34774 * 120.00088 * 84.99944 * 4 2 1 6 6 O 1.21280 * 120.00294 * 0.02562 * 5 4 2 7 7 C 1.50704 * 120.00134 * 180.02562 * 5 4 2 8 8 S 1.81002 * 109.47180 * 179.97438 * 7 5 4 9 9 C 1.76200 * 100.00037 * 180.02562 * 8 7 5 10 10 H 1.08000 * 119.99867 * 359.97438 * 9 8 7 11 11 C 1.38793 * 120.00379 * 179.72711 * 9 8 7 12 12 N 1.31637 * 119.99634 * 359.97438 * 11 9 8 13 13 Si 1.86791 * 120.00436 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.47253 * 89.99907 * 13 11 9 15 15 H 1.48505 * 109.47437 * 210.00094 * 13 11 9 16 16 H 1.48503 * 109.46998 * 329.99654 * 13 11 9 17 17 C 1.52997 * 109.47073 * 120.00491 * 2 1 3 18 18 H 1.09006 * 109.49867 * 180.02562 * 17 2 1 19 19 C 1.53034 * 109.49619 * 300.15792 * 17 2 1 20 20 C 1.53042 * 109.54031 * 181.32183 * 19 17 2 21 21 C 1.53198 * 109.30887 * 298.63808 * 20 19 17 22 22 N 1.46918 * 108.77790 * 54.62921 * 21 20 19 23 23 C 1.34781 * 120.63158 * 126.41475 * 22 21 20 24 24 O 1.21351 * 119.99728 * 351.36254 * 23 22 21 25 25 C 1.49445 * 120.00509 * 171.35888 * 23 22 21 26 26 N 1.34775 * 120.00114 * 173.24370 * 25 23 22 27 27 O 1.21352 * 119.99762 * 353.24147 * 25 23 22 28 28 C 1.46925 * 118.74285 * 306.39661 * 22 21 20 29 29 H 1.09003 * 109.47369 * 59.99722 * 1 2 3 30 30 H 1.09000 * 109.47682 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47192 * 299.99616 * 1 2 3 32 32 H 0.96999 * 120.00207 * 265.00302 * 4 2 1 33 33 H 1.08999 * 109.47278 * 59.99631 * 7 5 4 34 34 H 1.09001 * 109.46894 * 299.99996 * 7 5 4 35 35 H 0.96997 * 120.00058 * 180.02562 * 12 11 9 36 36 H 1.09003 * 109.46217 * 301.33492 * 19 17 2 37 37 H 1.08993 * 109.46557 * 61.30057 * 19 17 2 38 38 H 1.08995 * 109.50342 * 178.68593 * 20 19 17 39 39 H 1.08997 * 109.49891 * 58.57780 * 20 19 17 40 40 H 1.09007 * 109.58365 * 294.84651 * 21 20 19 41 41 H 1.08997 * 109.70506 * 174.49755 * 21 20 19 42 42 H 0.97000 * 120.00231 * 359.97438 * 26 25 23 43 43 H 0.97000 * 119.99622 * 180.02562 * 26 25 23 44 44 H 1.09001 * 109.58067 * 293.81961 * 28 22 21 45 45 H 1.09004 * 109.70575 * 173.46436 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6906 -1.1962 5 6 2.1469 -0.0182 -2.3571 6 8 1.8590 1.1587 -2.4115 7 6 2.6487 -0.7287 -3.5878 8 16 2.7090 0.4343 -4.9735 9 6 3.3108 -0.6312 -6.2413 10 1 3.5203 -1.6676 -6.0212 11 6 3.5107 -0.1400 -7.5238 12 7 3.2502 1.1219 -7.7933 13 14 4.1494 -1.2693 -8.8676 14 1 3.0037 -1.9119 -9.5602 15 1 4.9384 -0.4781 -9.8458 16 1 5.0139 -2.3158 -8.2653 17 6 2.0399 -0.7213 1.2492 18 1 3.1300 -0.7212 1.2498 19 6 1.5269 -0.0028 2.4991 20 6 2.0634 -0.7040 3.7492 21 6 1.5534 -2.1483 3.7780 22 7 1.9180 -2.8040 2.5148 23 6 2.5956 -3.9691 2.5164 24 8 3.0467 -4.4072 3.5543 25 6 2.7914 -4.7215 1.2402 26 7 3.5820 -5.8127 1.2157 27 8 2.2384 -4.3500 0.2259 28 6 1.5297 -2.1657 1.2497 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 2.2489 -1.6317 -1.1528 33 1 1.9758 -1.5505 -3.8327 34 1 3.6478 -1.1212 -3.3987 35 1 3.3896 1.4652 -8.6897 36 1 1.8683 1.0323 2.4888 37 1 0.4372 -0.0255 2.5096 38 1 1.7167 -0.1780 4.6386 39 1 3.1531 -0.7036 3.7271 40 1 0.4692 -2.1508 3.8913 41 1 2.0090 -2.6824 4.6119 42 1 4.0243 -6.1095 2.0264 43 1 3.7094 -6.3008 0.3872 44 1 0.4436 -2.1696 1.1569 45 1 1.9699 -2.7091 0.4136 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001354011400.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:49:23 Heat of formation + Delta-G solvation = -130.793579 kcal Electronic energy + Delta-G solvation = -28155.668139 eV Core-core repulsion = 24105.383538 eV Total energy + Delta-G solvation = -4050.284601 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.12752 -40.88784 -39.76046 -39.01866 -36.53821 -34.92154 -34.58235 -33.92152 -32.86769 -30.77524 -29.47882 -27.66711 -27.57658 -25.61629 -24.96060 -22.90576 -21.49675 -21.32475 -20.44369 -19.79969 -18.96914 -18.28710 -17.84180 -17.49906 -17.19063 -16.91515 -16.87163 -16.53215 -16.27874 -15.90345 -15.85192 -15.29171 -15.21351 -14.82849 -14.66980 -14.54926 -14.48117 -14.09900 -14.01800 -13.44087 -13.40276 -13.16113 -12.95416 -12.89146 -12.70201 -12.59774 -12.25081 -12.04782 -11.87013 -11.76721 -11.61882 -11.54017 -11.14008 -10.92946 -10.88345 -10.32096 -10.27747 -10.10408 -9.80247 -8.65872 -8.34401 -6.12179 0.26359 1.27291 1.36695 1.42485 1.47066 1.57899 1.63557 2.03839 2.26200 2.31103 2.57055 2.99559 3.32390 3.42269 3.64359 3.73989 3.79155 3.97071 4.02096 4.17794 4.25887 4.29807 4.35343 4.48888 4.51116 4.56207 4.63491 4.78616 4.84690 4.88968 4.93026 5.03219 5.04992 5.21501 5.27771 5.30866 5.42101 5.47393 5.54876 5.67861 5.89086 6.10917 6.20213 6.49160 6.64952 6.98144 7.06835 7.25492 8.74872 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.014102 B = 0.002617 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.087604 B =10697.111336 C =12372.947826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.151 3.849 3 H 0.074 0.926 4 N -0.712 5.712 5 C 0.536 3.464 6 O -0.561 6.561 7 C -0.132 4.132 8 S -0.146 6.146 9 C -0.547 4.547 10 H 0.081 0.919 11 C 0.013 3.987 12 N -0.911 5.911 13 Si 0.999 3.001 14 H -0.268 1.268 15 H -0.277 1.277 16 H -0.259 1.259 17 C -0.098 4.098 18 H 0.073 0.927 19 C -0.115 4.115 20 C -0.125 4.125 21 C 0.101 3.899 22 N -0.574 5.574 23 C 0.502 3.498 24 O -0.544 6.544 25 C 0.509 3.491 26 N -0.800 5.800 27 O -0.534 6.534 28 C 0.070 3.930 29 H 0.034 0.966 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.410 0.590 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.271 0.729 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.103 0.897 39 H 0.058 0.942 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.422 0.578 43 H 0.423 0.577 44 H 0.088 0.912 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.661 -13.175 27.463 30.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.046 3.954 3 H 0.092 0.908 4 N -0.366 5.366 5 C 0.322 3.678 6 O -0.439 6.439 7 C -0.283 4.283 8 S 0.081 5.919 9 C -0.695 4.695 10 H 0.099 0.901 11 C -0.191 4.191 12 N -0.548 5.548 13 Si 0.820 3.180 14 H -0.193 1.193 15 H -0.202 1.202 16 H -0.182 1.182 17 C -0.118 4.118 18 H 0.091 0.909 19 C -0.153 4.153 20 C -0.163 4.163 21 C -0.020 4.020 22 N -0.306 5.306 23 C 0.285 3.715 24 O -0.422 6.422 25 C 0.289 3.711 26 N -0.366 5.366 27 O -0.412 6.412 28 C -0.051 4.051 29 H 0.053 0.947 30 H 0.090 0.910 31 H 0.111 0.889 32 H 0.247 0.753 33 H 0.124 0.876 34 H 0.123 0.877 35 H 0.080 0.920 36 H 0.094 0.906 37 H 0.105 0.895 38 H 0.121 0.879 39 H 0.077 0.923 40 H 0.111 0.889 41 H 0.108 0.892 42 H 0.254 0.746 43 H 0.257 0.743 44 H 0.106 0.894 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.324 -10.968 27.303 29.611 hybrid contribution 1.065 -2.282 -1.037 2.723 sum -2.259 -13.249 26.266 29.505 Atomic orbital electron populations 1.22280 0.94326 1.02966 1.02606 1.20971 0.94978 0.96618 0.82785 0.90791 1.45995 1.67556 1.14400 1.08688 1.19987 0.76672 0.86579 0.84553 1.90679 1.50640 1.17450 1.85120 1.23392 1.05275 1.03261 0.96375 1.85503 1.86757 1.17097 1.02532 1.23206 1.50975 0.98497 0.96828 0.90094 1.26124 0.95073 0.97228 1.00700 1.70183 1.46863 1.15540 1.22166 0.84954 0.78452 0.77754 0.76823 1.19288 1.20208 1.18245 1.21701 1.00888 0.94800 0.94368 0.90894 1.21657 1.02154 0.99488 0.91992 1.21860 1.00997 0.94200 0.99238 1.21990 1.01523 0.93590 0.84889 1.48035 1.52933 1.20279 1.09361 1.20185 0.79488 0.82644 0.89206 1.90747 1.48979 1.68604 1.33891 1.20158 0.79982 0.82527 0.88477 1.43485 1.47619 1.27887 1.17658 1.90591 1.48704 1.66224 1.35723 1.22981 1.02342 0.93123 0.86687 0.94660 0.90961 0.88908 0.75298 0.87596 0.87651 0.91976 0.90624 0.89461 0.87894 0.92304 0.88910 0.89226 0.74599 0.74270 0.89369 0.85514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.22 8.78 71.98 0.63 -2.59 16 2 C 0.15 3.29 2.41 44.99 0.11 3.40 16 3 H 0.07 1.94 7.58 -2.39 -0.02 1.92 16 4 N -0.71 -18.96 5.00 -442.55 -2.21 -21.17 16 5 C 0.54 20.31 7.81 87.66 0.68 20.99 16 6 O -0.56 -26.01 15.52 -3.03 -0.05 -26.05 16 7 C -0.13 -5.44 6.16 71.24 0.44 -5.00 16 8 S -0.15 -8.24 20.57 -56.49 -1.16 -9.40 16 9 C -0.55 -31.75 9.50 67.95 0.65 -31.10 16 10 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 11 C 0.01 0.77 5.49 84.85 0.47 1.24 16 12 N -0.91 -56.43 13.22 21.65 0.29 -56.14 16 13 Si 1.00 44.03 29.55 68.60 2.03 46.06 16 14 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 15 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 16 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 17 C -0.10 -1.52 2.33 -10.72 -0.02 -1.54 16 18 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 19 C -0.12 -1.25 4.77 30.62 0.15 -1.10 16 20 C -0.12 -1.15 6.08 30.67 0.19 -0.97 16 21 C 0.10 1.13 6.44 86.37 0.56 1.68 16 22 N -0.57 -8.74 2.97 -820.49 -2.44 -11.18 16 23 C 0.50 8.96 7.73 87.27 0.67 9.63 16 24 O -0.54 -11.35 15.93 -3.25 -0.05 -11.41 16 25 C 0.51 8.43 8.01 87.27 0.70 9.13 16 26 N -0.80 -7.75 8.86 -174.50 -1.55 -9.30 16 27 O -0.53 -11.09 14.02 -3.25 -0.05 -11.14 16 28 C 0.07 1.09 4.76 86.36 0.41 1.50 16 29 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.07 1.23 6.32 -2.39 -0.02 1.22 16 31 H 0.09 1.32 6.46 -2.39 -0.02 1.30 16 32 H 0.41 9.26 6.97 -92.71 -0.65 8.62 16 33 H 0.11 4.02 8.14 -2.40 -0.02 4.00 16 34 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 35 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 36 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.09 0.75 6.50 -2.39 -0.02 0.73 16 38 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 41 H 0.09 1.14 7.01 -2.39 -0.02 1.13 16 42 H 0.42 2.87 8.32 -92.71 -0.77 2.10 16 43 H 0.42 2.70 8.93 -92.71 -0.83 1.87 16 44 H 0.09 1.26 6.18 -2.39 -0.01 1.24 16 45 H 0.13 2.36 2.90 -47.05 -0.14 2.22 16 Total: -1.00 -80.99 375.67 -0.87 -81.86 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: -1.31 Total: 22.59 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: 5.62 Total: 5.27 kcal Atomic # 7 Polarization: -91.87 SS G_CDS: -5.91 Total: -97.78 kcal Atomic # 8 Polarization: -48.45 SS G_CDS: -0.14 Total: -48.60 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 16 Polarization: -8.24 SS G_CDS: -1.16 Total: -9.40 kcal Total: -80.99 -0.87 -81.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354011400.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.930 kcal (2) G-P(sol) polarization free energy of solvation -80.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds