Wall clock time and date at job start Wed Apr 1 2020 01:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34774 * 120.00245 * 2 1 4 4 O 1.21289 * 120.00039 * 354.87625 * 3 2 1 5 5 C 1.50706 * 120.00336 * 174.87781 * 3 2 1 6 6 C 1.50699 * 115.54640 * 65.49407 * 5 3 2 7 7 O 1.21280 * 119.99635 * 220.05764 * 6 5 3 8 8 N 1.34778 * 120.00282 * 40.05897 * 6 5 3 9 9 C 1.46497 * 119.99621 * 174.93413 * 8 6 5 10 10 C 1.53005 * 109.46727 * 179.97438 * 9 8 6 11 11 H 1.09004 * 109.46714 * 65.00352 * 10 9 8 12 12 C 1.53000 * 109.47061 * 185.00129 * 10 9 8 13 13 N 1.46500 * 109.47452 * 305.00510 * 10 9 8 14 14 C 1.34769 * 120.00289 * 155.00184 * 13 10 9 15 15 O 1.21287 * 119.99922 * 359.97438 * 14 13 10 16 16 C 1.50700 * 120.00289 * 179.97438 * 14 13 10 17 17 S 1.80995 * 109.47427 * 179.97438 * 16 14 13 18 18 C 1.76193 * 100.00072 * 180.02562 * 17 16 14 19 19 H 1.07997 * 120.00090 * 0.02562 * 18 17 16 20 20 C 1.38800 * 120.00128 * 179.97438 * 18 17 16 21 21 N 1.31626 * 120.00033 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00293 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47147 * 60.00313 * 22 20 18 24 24 H 1.48501 * 109.47342 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47061 * 300.00640 * 22 20 18 26 26 C 1.53000 * 117.51626 * 211.19362 * 5 3 2 27 27 C 1.52995 * 117.49922 * 279.82200 * 5 3 2 28 28 H 1.08998 * 109.47271 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47525 * 300.00915 * 1 2 3 30 30 H 1.09004 * 109.46962 * 60.00260 * 1 2 3 31 31 H 0.97005 * 120.00090 * 179.97438 * 2 1 3 32 32 H 0.96997 * 120.00095 * 354.93856 * 8 6 5 33 33 H 1.09001 * 109.47017 * 60.00382 * 9 8 6 34 34 H 1.09003 * 109.47774 * 300.00071 * 9 8 6 35 35 H 1.09001 * 109.47421 * 60.00050 * 12 10 9 36 36 H 1.09003 * 109.46921 * 180.02562 * 12 10 9 37 37 H 1.09000 * 109.47044 * 299.99891 * 12 10 9 38 38 H 0.97000 * 119.99313 * 334.99579 * 13 10 9 39 39 H 1.08995 * 109.46963 * 300.00420 * 16 14 13 40 40 H 1.09005 * 109.46908 * 59.99589 * 16 14 13 41 41 H 0.97000 * 120.00527 * 179.97438 * 21 20 18 42 42 H 1.09002 * 117.49694 * 214.96731 * 26 5 3 43 43 H 1.08990 * 117.50182 * 359.97438 * 26 5 3 44 44 H 1.09003 * 117.50073 * 359.97438 * 27 5 3 45 45 H 1.08999 * 117.50038 * 144.97444 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5361 2.2155 -0.0938 5 6 3.6414 1.1698 0.1165 6 6 4.3840 0.5523 -1.0403 7 8 5.3591 -0.1391 -0.8352 8 7 3.9646 0.7683 -2.3028 9 6 4.7485 0.2614 -3.4318 10 6 4.0571 0.6396 -4.7433 11 1 4.0584 1.7239 -4.8551 12 6 4.8068 0.0050 -5.9165 13 7 2.6757 0.1521 -4.7255 14 6 1.7384 0.7553 -5.4829 15 8 2.0384 1.7021 -6.1791 16 6 0.3175 0.2535 -5.4650 17 16 -0.6931 1.2631 -6.5764 18 6 -2.2568 0.4792 -6.3650 19 1 -2.3522 -0.3640 -5.6970 20 6 -3.3662 0.9459 -7.0563 21 7 -3.2501 1.9738 -7.8702 22 14 -5.0242 0.1152 -6.8317 23 1 -5.4297 0.1971 -5.4055 24 1 -6.0382 0.7978 -7.6750 25 1 -4.9227 -1.3100 -7.2364 26 6 4.2938 2.3620 0.8193 27 6 4.2419 0.9994 1.5133 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.9500 -0.8401 0.0004 32 1 3.1439 1.2595 -2.4639 33 1 4.8261 -0.8236 -3.3622 34 1 5.7464 0.6994 -3.4073 35 1 4.8057 -1.0792 -5.8047 36 1 4.3145 0.2749 -6.8508 37 1 5.8346 0.3679 -5.9298 38 1 2.4358 -0.6049 -4.1685 39 1 0.2948 -0.7849 -5.7953 40 1 -0.0790 0.3212 -4.4518 41 1 -4.0253 2.2998 -8.3536 42 1 5.2603 2.6996 0.4451 43 1 3.6364 3.1449 1.1972 44 1 3.5503 0.8859 2.3481 45 1 5.1740 0.4404 1.5957 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001354544196.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:56:18 Heat of formation + Delta-G solvation = -87.401738 kcal Electronic energy + Delta-G solvation = -27892.051221 eV Core-core repulsion = 23843.648231 eV Total energy + Delta-G solvation = -4048.402990 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.10610 -39.70549 -39.12362 -36.86319 -36.03556 -34.92208 -33.93182 -32.45441 -31.54816 -28.68897 -28.15671 -26.95443 -25.51170 -24.34896 -22.91514 -22.01921 -21.79718 -20.43442 -20.07452 -18.76455 -17.88966 -16.91251 -16.66200 -16.33688 -16.22855 -16.02634 -15.47758 -15.08169 -14.94697 -14.82922 -14.72858 -14.53367 -14.14867 -13.47467 -13.36088 -13.18813 -13.09244 -12.99047 -12.84434 -12.60125 -12.55360 -12.13240 -12.07095 -11.90032 -11.54994 -11.23040 -11.07415 -11.06066 -11.03685 -10.79347 -10.53902 -10.04458 -9.85693 -9.56948 -9.48903 -9.42172 -9.10770 -9.04854 -8.27540 -6.52913 -6.23940 -3.94871 2.01170 2.09218 2.59962 2.67682 2.95369 3.00427 3.21256 3.25048 3.27773 3.39799 3.63652 4.17826 4.20094 4.21770 4.30087 4.35240 4.36101 4.84107 4.96231 5.03162 5.09164 5.11316 5.12343 5.22305 5.27149 5.28305 5.36828 5.39878 5.50068 5.60600 5.61485 5.65641 5.82047 5.87699 5.92540 5.98831 6.07538 6.12162 6.50960 7.00155 7.06018 7.55951 7.58217 7.71336 7.80107 8.32141 8.51265 9.21179 10.83434 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.011261 B = 0.002995 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2485.836060 B = 9347.346604 C =11150.239347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.726 5.726 3 C 0.547 3.453 4 O -0.518 6.518 5 C -0.204 4.204 6 C 0.558 3.442 7 O -0.531 6.531 8 N -0.721 5.721 9 C 0.113 3.887 10 C 0.131 3.869 11 H 0.096 0.904 12 C -0.160 4.160 13 N -0.738 5.738 14 C 0.533 3.467 15 O -0.512 6.512 16 C -0.153 4.153 17 S -0.057 6.057 18 C -0.537 4.537 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.918 3.082 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C -0.118 4.118 27 C -0.126 4.126 28 H 0.079 0.921 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.403 0.597 32 H 0.408 0.592 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.397 0.603 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.269 0.731 42 H 0.110 0.890 43 H 0.116 0.884 44 H 0.107 0.893 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.132 -6.791 18.001 25.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.377 5.377 3 C 0.331 3.669 4 O -0.392 6.392 5 C -0.211 4.211 6 C 0.343 3.657 7 O -0.407 6.407 8 N -0.373 5.373 9 C -0.011 4.011 10 C 0.025 3.975 11 H 0.114 0.886 12 C -0.219 4.219 13 N -0.393 5.393 14 C 0.320 3.680 15 O -0.386 6.386 16 C -0.304 4.304 17 S 0.169 5.831 18 C -0.685 4.685 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.502 5.502 22 Si 0.744 3.256 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.200 1.200 26 C -0.156 4.156 27 C -0.163 4.163 28 H 0.098 0.902 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.237 0.763 32 H 0.243 0.757 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.231 0.769 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.079 0.921 42 H 0.128 0.872 43 H 0.134 0.866 44 H 0.126 0.874 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 16.782 -4.788 16.760 24.196 hybrid contribution -1.825 -2.260 1.000 3.072 sum 14.958 -7.048 17.760 24.266 Atomic orbital electron populations 1.21664 0.78463 1.02842 1.03035 1.45731 1.08185 1.08364 1.75436 1.19217 0.87025 0.84087 0.76603 1.90791 1.69342 1.31347 1.47761 1.21531 0.92929 1.10150 0.96444 1.19012 0.83964 0.79938 0.82769 1.90724 1.27265 1.37947 1.84796 1.45968 1.28239 1.57815 1.05255 1.21781 0.95291 1.00241 0.83787 1.21151 0.81748 1.00990 0.93564 0.88600 1.22110 1.00242 1.00918 0.98656 1.46133 1.08381 1.36300 1.48489 1.20344 0.86604 0.82481 0.78613 1.90715 1.81553 1.26885 1.39435 1.23528 0.94991 1.05430 1.06456 1.85414 1.02477 1.41220 1.53951 1.22810 0.94409 1.19512 1.31786 0.91026 1.24984 0.99063 0.94988 0.94475 1.69999 1.31047 1.23325 1.25857 0.86234 0.81627 0.79330 0.78368 1.19914 1.20789 1.19953 1.23062 1.01895 0.91247 0.99413 1.23108 1.03032 0.99746 0.90460 0.90228 0.92005 0.91247 0.76327 0.75651 0.90445 0.89742 0.92168 0.90953 0.91470 0.76895 0.89266 0.89385 0.92087 0.87204 0.86594 0.87430 0.86328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.67 10.71 59.84 0.64 1.31 16 2 N -0.73 -5.89 5.71 -67.08 -0.38 -6.28 16 3 C 0.55 5.80 6.38 -10.98 -0.07 5.73 16 4 O -0.52 -7.56 16.71 5.55 0.09 -7.47 16 5 C -0.20 -1.85 2.39 -156.81 -0.37 -2.23 16 6 C 0.56 5.66 7.33 -10.99 -0.08 5.58 16 7 O -0.53 -6.54 16.28 5.56 0.09 -6.45 16 8 N -0.72 -6.85 5.32 -60.29 -0.32 -7.17 16 9 C 0.11 0.97 5.24 -4.04 -0.02 0.95 16 10 C 0.13 1.36 2.73 -67.93 -0.19 1.17 16 11 H 0.10 1.18 7.58 -51.93 -0.39 0.79 16 12 C -0.16 -1.54 9.48 37.16 0.35 -1.19 16 13 N -0.74 -8.80 4.52 -53.80 -0.24 -9.04 16 14 C 0.53 9.31 7.81 -10.99 -0.09 9.22 16 15 O -0.51 -11.01 15.53 5.55 0.09 -10.93 16 16 C -0.15 -2.97 6.16 36.01 0.22 -2.74 16 17 S -0.06 -1.52 20.57 -107.50 -2.21 -3.73 16 18 C -0.54 -15.06 9.50 30.94 0.29 -14.76 16 19 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -25.96 13.22 55.49 0.73 -25.23 16 22 Si 0.92 21.15 29.55 -169.99 -5.02 16.12 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 26 C -0.12 -0.93 9.76 -26.73 -0.26 -1.19 16 27 C -0.13 -0.87 9.75 -26.74 -0.26 -1.14 16 28 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.40 2.42 8.83 -40.82 -0.36 2.06 16 32 H 0.41 4.29 7.53 -40.82 -0.31 3.99 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.40 3.80 8.60 -40.82 -0.35 3.45 16 39 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 40 H 0.09 1.58 8.14 -51.91 -0.42 1.15 16 41 H 0.27 7.51 8.31 -40.82 -0.34 7.18 16 42 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.12 0.93 8.00 -51.93 -0.42 0.52 16 44 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.12 0.82 7.68 -51.93 -0.40 0.43 16 LS Contribution 403.49 15.07 6.08 6.08 Total: -1.00 -36.74 403.49 -7.87 -44.61 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -6.84 Total: 6.76 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: 0.07 Total: 2.72 kcal Atomic # 7 Polarization: -47.50 SS G_CDS: -0.21 Total: -47.71 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: 0.27 Total: -24.85 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -36.74 -7.87 -44.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354544196.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.788 kcal (2) G-P(sol) polarization free energy of solvation -36.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds