Wall clock time and date at job start Wed Apr 1 2020 01:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34774 * 120.00245 * 2 1 4 4 O 1.21289 * 120.00039 * 354.87625 * 3 2 1 5 5 C 1.50706 * 120.00336 * 174.87781 * 3 2 1 6 6 C 1.50699 * 115.54640 * 65.49407 * 5 3 2 7 7 O 1.21280 * 119.99635 * 220.05764 * 6 5 3 8 8 N 1.34778 * 120.00282 * 40.05897 * 6 5 3 9 9 C 1.46497 * 119.99621 * 174.93413 * 8 6 5 10 10 C 1.53005 * 109.46727 * 179.97438 * 9 8 6 11 11 H 1.09004 * 109.46714 * 65.00352 * 10 9 8 12 12 C 1.53000 * 109.47061 * 185.00129 * 10 9 8 13 13 N 1.46500 * 109.47452 * 305.00510 * 10 9 8 14 14 C 1.34769 * 120.00289 * 155.00184 * 13 10 9 15 15 O 1.21287 * 119.99922 * 359.97438 * 14 13 10 16 16 C 1.50700 * 120.00289 * 179.97438 * 14 13 10 17 17 S 1.80995 * 109.47427 * 179.97438 * 16 14 13 18 18 C 1.76193 * 100.00072 * 180.02562 * 17 16 14 19 19 H 1.07997 * 120.00090 * 0.02562 * 18 17 16 20 20 C 1.38800 * 120.00128 * 179.97438 * 18 17 16 21 21 N 1.31626 * 120.00033 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00293 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47147 * 60.00313 * 22 20 18 24 24 H 1.48501 * 109.47342 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47061 * 300.00640 * 22 20 18 26 26 C 1.53000 * 117.51626 * 211.19362 * 5 3 2 27 27 C 1.52995 * 117.49922 * 279.82200 * 5 3 2 28 28 H 1.08998 * 109.47271 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47525 * 300.00915 * 1 2 3 30 30 H 1.09004 * 109.46962 * 60.00260 * 1 2 3 31 31 H 0.97005 * 120.00090 * 179.97438 * 2 1 3 32 32 H 0.96997 * 120.00095 * 354.93856 * 8 6 5 33 33 H 1.09001 * 109.47017 * 60.00382 * 9 8 6 34 34 H 1.09003 * 109.47774 * 300.00071 * 9 8 6 35 35 H 1.09001 * 109.47421 * 60.00050 * 12 10 9 36 36 H 1.09003 * 109.46921 * 180.02562 * 12 10 9 37 37 H 1.09000 * 109.47044 * 299.99891 * 12 10 9 38 38 H 0.97000 * 119.99313 * 334.99579 * 13 10 9 39 39 H 1.08995 * 109.46963 * 300.00420 * 16 14 13 40 40 H 1.09005 * 109.46908 * 59.99589 * 16 14 13 41 41 H 0.97000 * 120.00527 * 179.97438 * 21 20 18 42 42 H 1.09002 * 117.49694 * 214.96731 * 26 5 3 43 43 H 1.08990 * 117.50182 * 359.97438 * 26 5 3 44 44 H 1.09003 * 117.50073 * 359.97438 * 27 5 3 45 45 H 1.08999 * 117.50038 * 144.97444 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5361 2.2155 -0.0938 5 6 3.6414 1.1698 0.1165 6 6 4.3840 0.5523 -1.0403 7 8 5.3591 -0.1391 -0.8352 8 7 3.9646 0.7683 -2.3028 9 6 4.7485 0.2614 -3.4318 10 6 4.0571 0.6396 -4.7433 11 1 4.0584 1.7239 -4.8551 12 6 4.8068 0.0050 -5.9165 13 7 2.6757 0.1521 -4.7255 14 6 1.7384 0.7553 -5.4829 15 8 2.0384 1.7021 -6.1791 16 6 0.3175 0.2535 -5.4650 17 16 -0.6931 1.2631 -6.5764 18 6 -2.2568 0.4792 -6.3650 19 1 -2.3522 -0.3640 -5.6970 20 6 -3.3662 0.9459 -7.0563 21 7 -3.2501 1.9738 -7.8702 22 14 -5.0242 0.1152 -6.8317 23 1 -5.4297 0.1971 -5.4055 24 1 -6.0382 0.7978 -7.6750 25 1 -4.9227 -1.3100 -7.2364 26 6 4.2938 2.3620 0.8193 27 6 4.2419 0.9994 1.5133 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.9500 -0.8401 0.0004 32 1 3.1439 1.2595 -2.4639 33 1 4.8261 -0.8236 -3.3622 34 1 5.7464 0.6994 -3.4073 35 1 4.8057 -1.0792 -5.8047 36 1 4.3145 0.2749 -6.8508 37 1 5.8346 0.3679 -5.9298 38 1 2.4358 -0.6049 -4.1685 39 1 0.2948 -0.7849 -5.7953 40 1 -0.0790 0.3212 -4.4518 41 1 -4.0253 2.2998 -8.3536 42 1 5.2603 2.6996 0.4451 43 1 3.6364 3.1449 1.1972 44 1 3.5503 0.8859 2.3481 45 1 5.1740 0.4404 1.5957 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001354544196.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:56:17 Heat of formation + Delta-G solvation = -116.955312 kcal Electronic energy + Delta-G solvation = -27893.332760 eV Core-core repulsion = 23843.648231 eV Total energy + Delta-G solvation = -4049.684529 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.89527 -40.88076 -40.09477 -37.78598 -36.86886 -35.72808 -34.91247 -34.58322 -32.71714 -30.08764 -28.88962 -27.70558 -27.65378 -25.08296 -23.49686 -22.97732 -22.64850 -21.66789 -20.85956 -19.91500 -19.45172 -18.03395 -17.76850 -17.17873 -17.04570 -17.01012 -16.87751 -16.41560 -16.31223 -16.04967 -15.75617 -15.40890 -15.30828 -14.78738 -14.61467 -14.21762 -14.09903 -13.94724 -13.87978 -13.65784 -13.31154 -13.17063 -13.16799 -13.00286 -12.86661 -12.66145 -12.61174 -12.24408 -12.09785 -11.74796 -11.70661 -11.31572 -11.12919 -10.98055 -10.89989 -10.30969 -10.27857 -10.25320 -10.20681 -8.66524 -8.34591 -6.12506 1.23437 1.26038 1.28606 1.43524 1.46168 1.55316 1.58001 1.86244 1.98767 2.22495 2.28002 2.73029 2.99700 3.31270 3.45065 3.54188 3.56061 3.60591 3.76434 3.94990 4.02301 4.20915 4.29901 4.39779 4.47976 4.52742 4.55942 4.58404 4.63116 4.67718 4.73003 4.83021 4.94455 4.97781 5.08694 5.14401 5.27915 5.30977 5.41247 5.43545 6.19282 6.19965 6.35588 6.43205 6.91679 7.05464 7.06705 7.20304 8.74335 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.011261 B = 0.002995 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2485.836060 B = 9347.346604 C =11150.239347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.712 5.712 3 C 0.547 3.453 4 O -0.565 6.565 5 C -0.215 4.215 6 C 0.564 3.436 7 O -0.550 6.550 8 N -0.720 5.720 9 C 0.121 3.879 10 C 0.134 3.866 11 H 0.075 0.925 12 C -0.156 4.156 13 N -0.711 5.711 14 C 0.537 3.463 15 O -0.559 6.559 16 C -0.129 4.129 17 S -0.150 6.150 18 C -0.546 4.546 19 H 0.083 0.917 20 C 0.014 3.986 21 N -0.912 5.912 22 Si 0.997 3.003 23 H -0.261 1.261 24 H -0.280 1.280 25 H -0.261 1.261 26 C -0.122 4.122 27 C -0.105 4.105 28 H 0.111 0.889 29 H 0.058 0.942 30 H 0.044 0.956 31 H 0.416 0.584 32 H 0.403 0.597 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.041 0.959 37 H 0.089 0.911 38 H 0.413 0.587 39 H 0.110 0.890 40 H 0.106 0.894 41 H 0.271 0.729 42 H 0.116 0.884 43 H 0.111 0.889 44 H 0.122 0.878 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.734 -9.480 20.004 27.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.363 5.363 3 C 0.332 3.668 4 O -0.444 6.444 5 C -0.222 4.222 6 C 0.350 3.650 7 O -0.428 6.428 8 N -0.371 5.371 9 C -0.002 4.002 10 C 0.029 3.971 11 H 0.093 0.907 12 C -0.214 4.214 13 N -0.365 5.365 14 C 0.323 3.677 15 O -0.437 6.437 16 C -0.280 4.280 17 S 0.078 5.922 18 C -0.694 4.694 19 H 0.101 0.899 20 C -0.191 4.191 21 N -0.548 5.548 22 Si 0.818 3.182 23 H -0.186 1.186 24 H -0.206 1.206 25 H -0.185 1.185 26 C -0.160 4.160 27 C -0.142 4.142 28 H 0.130 0.870 29 H 0.077 0.923 30 H 0.063 0.937 31 H 0.252 0.748 32 H 0.238 0.762 33 H 0.111 0.889 34 H 0.114 0.886 35 H 0.096 0.904 36 H 0.060 0.940 37 H 0.108 0.892 38 H 0.250 0.750 39 H 0.128 0.872 40 H 0.124 0.876 41 H 0.080 0.920 42 H 0.135 0.865 43 H 0.129 0.871 44 H 0.140 0.860 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 17.426 -7.557 18.800 26.725 hybrid contribution -1.885 -1.457 0.442 2.424 sum 15.540 -9.015 19.242 26.326 Atomic orbital electron populations 1.21727 0.78301 1.04490 1.01683 1.45683 1.08346 1.08334 1.73920 1.19471 0.87624 0.83925 0.75799 1.90773 1.70374 1.33050 1.50189 1.21486 0.91839 1.11520 0.97344 1.19055 0.83598 0.79452 0.82900 1.90719 1.28145 1.38912 1.85044 1.46010 1.28018 1.57544 1.05511 1.21773 0.95149 1.01154 0.82122 1.21236 0.80611 0.99943 0.95308 0.90665 1.22064 1.00917 1.02013 0.96443 1.45840 1.08283 1.35699 1.46711 1.20025 0.86632 0.82146 0.78907 1.90709 1.82071 1.29081 1.41794 1.23358 0.94887 1.04671 1.05131 1.85596 1.04792 1.44589 1.57263 1.23166 0.94675 1.19678 1.31904 0.89859 1.26118 1.03583 0.95540 0.93878 1.70173 1.32307 1.25203 1.27136 0.85029 0.75867 0.78458 0.78816 1.18587 1.20553 1.18545 1.23135 1.01922 0.91463 0.99443 1.23200 1.03083 0.98502 0.89422 0.87048 0.92341 0.93671 0.74782 0.76218 0.88859 0.88632 0.90369 0.94017 0.89242 0.74974 0.87220 0.87602 0.92025 0.86529 0.87068 0.85958 0.85826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.20 10.71 127.77 1.37 2.57 16 2 N -0.71 -10.35 5.71 -484.51 -2.77 -13.12 16 3 C 0.55 11.11 6.38 87.66 0.56 11.67 16 4 O -0.57 -16.68 16.71 -3.06 -0.05 -16.73 16 5 C -0.22 -3.59 2.39 -53.67 -0.13 -3.72 16 6 C 0.56 10.33 7.33 87.66 0.64 10.97 16 7 O -0.55 -12.19 16.28 -3.03 -0.05 -12.24 16 8 N -0.72 -12.37 5.32 -463.06 -2.46 -14.84 16 9 C 0.12 1.78 5.24 86.38 0.45 2.23 16 10 C 0.13 2.58 2.73 44.99 0.12 2.70 16 11 H 0.08 1.84 7.58 -2.38 -0.02 1.82 16 12 C -0.16 -2.72 9.48 71.98 0.68 -2.04 16 13 N -0.71 -15.86 4.52 -442.52 -2.00 -17.85 16 14 C 0.54 18.63 7.81 87.66 0.68 19.31 16 15 O -0.56 -24.76 15.53 -3.05 -0.05 -24.81 16 16 C -0.13 -4.92 6.16 71.24 0.44 -4.49 16 17 S -0.15 -8.19 20.57 -56.49 -1.16 -9.35 16 18 C -0.55 -30.81 9.50 67.95 0.65 -30.16 16 19 H 0.08 4.32 7.80 -2.91 -0.02 4.30 16 20 C 0.01 0.77 5.49 84.86 0.47 1.23 16 21 N -0.91 -55.92 13.22 21.65 0.29 -55.63 16 22 Si 1.00 43.11 29.55 68.60 2.03 45.13 16 23 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 24 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 25 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 26 C -0.12 -1.77 9.76 30.59 0.30 -1.48 16 27 C -0.10 -1.23 9.75 30.59 0.30 -0.93 16 28 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.06 0.91 8.14 -2.38 -0.02 0.90 16 30 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.42 3.92 8.83 -92.70 -0.82 3.10 16 32 H 0.40 8.03 7.53 -92.71 -0.70 7.33 16 33 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.08 1.09 8.14 -2.39 -0.02 1.08 16 36 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.41 6.75 8.60 -92.71 -0.80 5.96 16 39 H 0.11 3.73 8.14 -2.40 -0.02 3.71 16 40 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 41 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 42 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.11 1.74 8.00 -2.39 -0.02 1.72 16 44 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.12 1.39 7.68 -2.39 -0.02 1.37 16 Total: -1.00 -83.19 403.49 -0.97 -84.16 By element: Atomic # 1 Polarization: 28.69 SS G_CDS: -1.28 Total: 27.41 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: 6.53 Total: 7.87 kcal Atomic # 7 Polarization: -94.49 SS G_CDS: -6.94 Total: -101.44 kcal Atomic # 8 Polarization: -53.63 SS G_CDS: -0.15 Total: -53.78 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 16 Polarization: -8.19 SS G_CDS: -1.16 Total: -9.35 kcal Total: -83.19 -0.97 -84.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354544196.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.797 kcal (2) G-P(sol) polarization free energy of solvation -83.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds