Wall clock time and date at job start Wed Apr 1 2020 01:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46886 * 2 1 4 4 C 1.50703 * 109.46524 * 240.00505 * 2 1 3 5 5 H 1.07997 * 120.00445 * 356.04122 * 4 2 1 6 6 C 1.37883 * 119.99565 * 176.04724 * 4 2 1 7 7 N 1.31504 * 119.99916 * 184.35925 * 6 4 2 8 8 Si 1.86798 * 119.99892 * 4.35817 * 6 4 2 9 9 H 1.48499 * 109.47283 * 94.55588 * 8 6 4 10 10 H 1.48503 * 109.47132 * 214.55543 * 8 6 4 11 11 H 1.48503 * 109.47525 * 334.54992 * 8 6 4 12 12 N 1.46898 * 109.47061 * 120.00428 * 2 1 3 13 13 C 1.46901 * 111.00187 * 58.95338 * 12 2 1 14 14 C 1.38581 * 110.99959 * 294.99838 * 12 2 1 15 15 N 1.31212 * 126.37195 * 60.72584 * 14 12 2 16 16 N 1.28502 * 110.13685 * 180.02562 * 15 14 12 17 17 C 1.31360 * 109.95363 * 359.97438 * 16 15 14 18 18 C 1.47645 * 126.48564 * 179.97438 * 17 16 15 19 19 C 1.42190 * 128.32507 * 127.21502 * 18 17 16 20 20 N 1.30038 * 106.49325 * 179.97438 * 19 18 17 21 21 O 1.20773 * 112.65652 * 359.97438 * 20 19 18 22 22 C 1.34544 * 111.81716 * 359.71956 * 21 20 19 23 23 C 1.47453 * 127.15710 * 180.29689 * 22 21 20 24 24 C 1.46958 * 127.17498 * 359.84673 * 23 22 21 25 25 C 1.34245 * 106.00817 * 179.97438 * 24 23 22 26 26 O 1.34184 * 109.11655 * 0.02562 * 25 24 23 27 27 C 1.33969 * 110.84392 * 359.72465 * 26 25 24 28 28 N 1.36701 * 126.36742 * 240.74896 * 14 12 2 29 29 C 1.46502 * 127.18815 * 359.95785 * 28 14 12 30 30 H 1.09005 * 109.46916 * 185.38102 * 1 2 3 31 31 H 1.09005 * 109.47177 * 305.37195 * 1 2 3 32 32 H 1.08992 * 109.47774 * 65.37594 * 1 2 3 33 33 H 0.97001 * 119.99988 * 179.97438 * 7 6 4 34 34 H 1.08998 * 109.47209 * 299.81994 * 13 12 2 35 35 H 1.09006 * 109.46897 * 59.82308 * 13 12 2 36 36 H 1.08995 * 109.47029 * 179.82271 * 13 12 2 37 37 H 1.08002 * 126.76005 * 0.03822 * 19 18 17 38 38 H 1.08005 * 126.99778 * 359.97438 * 24 23 22 39 39 H 1.07997 * 125.43997 * 180.02562 * 25 24 23 40 40 H 1.08004 * 125.81391 * 180.28269 * 27 26 25 41 41 H 1.09009 * 109.46975 * 95.19045 * 29 28 14 42 42 H 1.09000 * 109.47465 * 215.19721 * 29 28 14 43 43 H 1.09000 * 109.46754 * 335.20136 * 29 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 1.3325 -1.1762 -1.9086 6 6 3.3852 -0.7655 -1.4908 7 7 3.8184 -1.3098 -2.6068 8 14 4.6026 -0.0670 -0.2582 9 1 5.0805 -1.1527 0.6352 10 1 5.7573 0.5224 -0.9824 11 1 3.9379 0.9847 0.5527 12 7 2.0197 -0.6926 1.1994 13 6 1.5283 -2.0762 1.2458 14 6 1.6698 -0.0024 2.3490 15 7 0.4513 0.2683 2.7536 16 7 0.4873 0.9229 3.8588 17 6 1.7338 1.1101 4.2285 18 6 2.1933 1.8176 5.4402 19 6 3.0889 1.3570 6.4439 20 7 3.1958 2.3186 7.3128 21 8 2.5293 3.2833 7.0234 22 6 1.8592 3.1007 5.8711 23 6 0.9562 4.0571 5.2048 24 6 0.5982 5.4070 5.6625 25 6 -0.2450 5.8989 4.7409 26 8 -0.4286 4.9814 3.7791 27 6 0.2837 3.8756 4.0329 28 7 2.5299 0.5234 3.2723 29 6 3.9938 0.4719 3.2488 30 1 -0.3633 -1.0232 0.0964 31 1 -0.3634 0.5949 0.8380 32 1 -0.3634 0.4281 -0.9341 33 1 4.7702 -1.3483 -2.7900 34 1 0.4386 -2.0743 1.2670 35 1 1.8737 -2.6142 0.3629 36 1 1.9083 -2.5667 2.1420 37 1 3.5840 0.3978 6.4776 38 1 0.9432 5.9025 6.5580 39 1 -0.7025 6.8767 4.7692 40 1 0.3176 2.9900 3.4155 41 1 4.3824 1.3866 2.8008 42 1 4.3705 0.3777 4.2673 43 1 4.3178 -0.3867 2.6607 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001355706088.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:50:43 Heat of formation + Delta-G solvation = 177.107046 kcal Electronic energy + Delta-G solvation = -30698.677304 eV Core-core repulsion = 26558.593076 eV Total energy + Delta-G solvation = -4140.084229 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -46.05812 -44.05949 -43.45755 -39.21316 -36.32488 -35.64660 -34.84363 -34.54536 -32.58083 -31.78765 -30.57528 -30.14378 -28.74929 -27.54472 -26.94183 -25.50744 -24.59849 -23.08791 -22.67524 -22.25818 -21.43100 -21.02273 -19.59337 -19.00653 -18.81897 -18.32577 -17.55679 -17.50973 -17.11607 -17.03662 -16.79654 -16.23277 -15.76856 -15.45995 -15.28307 -15.05250 -14.67337 -14.48543 -14.35174 -13.99319 -13.82140 -13.67738 -13.44189 -13.28293 -12.89382 -12.85403 -12.63745 -12.60831 -12.39470 -12.22795 -12.04602 -11.84545 -11.69345 -11.50491 -11.35004 -11.09738 -10.81647 -10.43185 -10.02800 -9.59973 -9.40145 -8.29720 -6.41365 -0.53412 0.41363 0.82127 0.89564 1.15006 1.38863 1.43084 1.48040 1.55187 1.57595 1.75455 2.07041 2.42862 2.72843 2.88976 3.13870 3.24338 3.31444 3.54897 3.69634 3.84199 3.92505 4.06150 4.10062 4.16191 4.25353 4.41044 4.46617 4.53020 4.56321 4.60835 4.67547 4.74550 4.78680 4.83899 4.86560 4.95043 5.08123 5.20640 5.34745 5.37911 5.51458 5.56671 5.82573 5.97792 6.22735 6.46701 6.71132 6.93441 7.31954 7.48892 8.82778 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.013772 B = 0.003929 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.695254 B = 7125.478593 C = 7865.660281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.193 3.807 3 H 0.032 0.968 4 C -0.508 4.508 5 H 0.044 0.956 6 C 0.033 3.967 7 N -0.936 5.936 8 Si 0.970 3.030 9 H -0.260 1.260 10 H -0.316 1.316 11 H -0.253 1.253 12 N -0.477 5.477 13 C 0.051 3.949 14 C 0.366 3.634 15 N -0.324 5.324 16 N -0.294 5.294 17 C 0.248 3.752 18 C -0.154 4.154 19 C 0.042 3.958 20 N -0.369 5.369 21 O 0.111 5.889 22 C 0.112 3.888 23 C -0.163 4.163 24 C -0.195 4.195 25 C -0.022 4.022 26 O -0.182 6.182 27 C 0.027 3.973 28 N -0.460 5.460 29 C 0.064 3.936 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.267 0.733 34 H 0.042 0.958 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.227 0.773 38 H 0.187 0.813 39 H 0.254 0.746 40 H 0.194 0.806 41 H 0.085 0.915 42 H 0.122 0.878 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.086 11.622 20.052 23.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.089 3.911 3 H 0.050 0.950 4 C -0.546 4.546 5 H 0.062 0.938 6 C -0.168 4.168 7 N -0.575 5.575 8 Si 0.797 3.203 9 H -0.185 1.185 10 H -0.245 1.245 11 H -0.177 1.177 12 N -0.204 5.204 13 C -0.096 4.096 14 C 0.010 3.990 15 N -0.168 5.168 16 N -0.136 5.136 17 C -0.018 4.018 18 C -0.161 4.161 19 C -0.138 4.138 20 N -0.074 5.074 21 O 0.050 5.950 22 C 0.045 3.955 23 C -0.165 4.165 24 C -0.214 4.214 25 C -0.087 4.087 26 O -0.077 6.077 27 C -0.044 4.044 28 N -0.152 5.152 29 C -0.078 4.078 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.243 0.757 38 H 0.204 0.796 39 H 0.270 0.730 40 H 0.210 0.790 41 H 0.104 0.896 42 H 0.140 0.860 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.399 11.780 20.822 23.964 hybrid contribution 1.117 -0.722 -0.853 1.580 sum -0.282 11.058 19.969 22.828 Atomic orbital electron populations 1.22281 0.96517 1.01747 1.01055 1.19655 0.92549 0.93630 0.85229 0.95019 1.20956 0.92553 1.36226 1.04906 0.93810 1.25854 1.00593 0.94109 0.96240 1.70060 1.15500 1.45858 1.26048 0.85451 0.76395 0.79624 0.78795 1.18518 1.24525 1.17743 1.59765 1.59389 1.03585 0.97688 1.22170 0.98800 0.86108 1.02519 1.22943 0.84958 0.98840 0.92224 1.74668 1.18662 1.16416 1.07081 1.74340 1.16182 1.15448 1.07676 1.21158 0.87193 1.01412 0.92031 1.18291 1.07361 0.94110 0.96372 1.25222 0.98121 1.01180 0.89288 1.73640 1.14134 0.96517 1.23153 1.84918 1.44066 1.33666 1.32347 1.21879 0.94070 0.92401 0.87138 1.18972 1.03961 0.96041 0.97556 1.23167 1.02364 0.92383 1.03495 1.24902 1.01005 0.95682 0.87125 1.83977 1.55635 1.22569 1.45539 1.24505 0.92975 0.90008 0.96870 1.46554 1.09757 1.41300 1.17539 1.22509 0.73752 1.05128 1.06391 0.92864 0.91826 0.93211 0.92422 0.93927 0.90351 0.91451 0.75666 0.79609 0.72989 0.78962 0.89609 0.85951 0.88924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.48 8.34 71.98 0.60 -5.88 16 2 C 0.19 8.69 1.64 44.17 0.07 8.76 16 3 H 0.03 1.50 7.08 -2.39 -0.02 1.49 16 4 C -0.51 -26.96 7.84 25.60 0.20 -26.76 16 5 H 0.04 2.59 7.99 -2.91 -0.02 2.56 16 6 C 0.03 1.77 5.47 84.66 0.46 2.24 16 7 N -0.94 -55.15 13.96 21.45 0.30 -54.85 16 8 Si 0.97 42.87 24.28 68.60 1.67 44.53 16 9 H -0.26 -10.64 6.94 99.48 0.69 -9.95 16 10 H -0.32 -14.37 7.11 99.48 0.71 -13.66 16 11 H -0.25 -10.45 5.65 99.48 0.56 -9.89 16 12 N -0.48 -19.05 2.41 -710.75 -1.71 -20.76 16 13 C 0.05 1.89 8.83 127.69 1.13 3.02 16 14 C 0.37 13.50 6.31 259.99 1.64 15.14 16 15 N -0.32 -12.28 9.62 -57.85 -0.56 -12.84 16 16 N -0.29 -10.24 10.01 -50.90 -0.51 -10.75 16 17 C 0.25 7.45 6.82 136.13 0.93 8.38 16 18 C -0.15 -3.83 6.04 -19.53 -0.12 -3.95 16 19 C 0.04 0.83 11.39 85.94 0.98 1.81 16 20 N -0.37 -8.12 11.99 -56.96 -0.68 -8.80 16 21 O 0.11 2.47 11.20 66.94 0.75 3.22 16 22 C 0.11 2.69 7.50 24.98 0.19 2.87 16 23 C -0.16 -3.83 6.32 -19.01 -0.12 -3.95 16 24 C -0.20 -3.21 11.15 23.64 0.26 -2.94 16 25 C -0.02 -0.32 12.03 66.91 0.81 0.49 16 26 O -0.18 -4.16 10.54 1.84 0.02 -4.14 16 27 C 0.03 0.72 11.37 67.37 0.77 1.48 16 28 N -0.46 -14.28 3.24 -539.98 -1.75 -16.02 16 29 C 0.06 1.55 9.95 127.77 1.27 2.82 16 30 H 0.05 2.15 6.11 -2.38 -0.01 2.13 16 31 H 0.06 2.55 5.91 -2.38 -0.01 2.53 16 32 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 34 H 0.04 1.56 6.18 -2.39 -0.01 1.55 16 35 H 0.08 3.22 7.11 -2.38 -0.02 3.20 16 36 H 0.07 2.18 8.12 -2.39 -0.02 2.16 16 37 H 0.23 2.87 7.94 -2.91 -0.02 2.85 16 38 H 0.19 1.97 8.06 -2.91 -0.02 1.94 16 39 H 0.25 1.03 8.06 -2.91 -0.02 1.01 16 40 H 0.19 6.00 5.11 -2.91 -0.01 5.98 16 41 H 0.09 2.03 7.95 -2.38 -0.02 2.01 16 42 H 0.12 1.94 7.16 -2.39 -0.02 1.93 16 43 H 0.09 2.46 6.50 -2.39 -0.02 2.45 16 Total: -1.00 -68.06 353.67 7.51 -60.55 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 0.91 Total: 16.32 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: 9.07 Total: 3.54 kcal Atomic # 7 Polarization: -119.11 SS G_CDS: -4.91 Total: -124.02 kcal Atomic # 8 Polarization: -1.68 SS G_CDS: 0.77 Total: -0.91 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 1.67 Total: 44.53 kcal Total: -68.06 7.51 -60.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355706088.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 237.659 kcal (2) G-P(sol) polarization free energy of solvation -68.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 169.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 177.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds