Wall clock time and date at job start Wed Apr 1 2020 01:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09007 * 109.46781 * 2 1 4 4 C 1.53001 * 109.47028 * 240.00134 * 2 1 3 5 5 N 1.46494 * 109.47152 * 184.99606 * 4 2 1 6 6 C 1.34772 * 120.00341 * 180.02562 * 5 4 2 7 7 O 1.21280 * 120.00002 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.00299 * 180.02562 * 6 5 4 9 9 H 1.08995 * 109.40182 * 59.82440 * 8 6 5 10 10 C 1.53070 * 109.40360 * 179.56941 * 8 6 5 11 11 C 1.53348 * 108.42721 * 169.02223 * 10 8 6 12 12 C 1.52921 * 108.66308 * 292.45702 * 11 10 8 13 13 N 1.45752 * 110.48748 * 50.77056 * 12 11 10 14 14 C 1.33351 * 124.10378 * 340.91564 * 13 12 11 15 15 O 1.21286 * 118.24780 * 182.22995 * 14 13 12 16 16 N 1.46495 * 109.47255 * 119.99738 * 2 1 3 17 17 C 1.34779 * 120.00299 * 275.00141 * 16 2 1 18 18 O 1.21283 * 119.99753 * 359.97438 * 17 16 2 19 19 C 1.50701 * 119.99843 * 180.02562 * 17 16 2 20 20 S 1.81001 * 109.46896 * 179.97438 * 19 17 16 21 21 C 1.76192 * 100.00053 * 179.97438 * 20 19 17 22 22 H 1.08000 * 120.00436 * 0.02562 * 21 20 19 23 23 C 1.38805 * 119.99929 * 179.97438 * 21 20 19 24 24 N 1.31624 * 120.00253 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99752 * 179.72153 * 23 21 20 26 26 H 1.48497 * 109.47323 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.46790 * 120.00306 * 25 23 21 28 28 H 1.48501 * 109.47364 * 240.00335 * 25 23 21 29 29 H 1.09007 * 109.46775 * 299.99751 * 1 2 3 30 30 H 1.08995 * 109.47007 * 59.99701 * 1 2 3 31 31 H 1.08998 * 109.46350 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.46903 * 304.99445 * 4 2 1 33 33 H 1.09007 * 109.46992 * 64.99651 * 4 2 1 34 34 H 0.97006 * 120.00180 * 0.02562 * 5 4 2 35 35 H 1.08998 * 109.67573 * 288.76606 * 10 8 6 36 36 H 1.09007 * 109.67344 * 49.29090 * 10 8 6 37 37 H 1.09005 * 109.59936 * 172.71625 * 11 10 8 38 38 H 1.09002 * 109.62042 * 52.21681 * 11 10 8 39 39 H 1.09003 * 109.30351 * 290.44991 * 12 11 10 40 40 H 1.09009 * 109.13282 * 170.97172 * 12 11 10 41 41 H 0.96999 * 117.95286 * 160.90569 * 13 12 11 42 42 H 0.97004 * 119.99811 * 95.00687 * 16 2 1 43 43 H 1.08998 * 109.46989 * 60.00366 * 19 17 16 44 44 H 1.08996 * 109.47123 * 299.99392 * 19 17 16 45 45 H 0.97000 * 120.00481 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0401 -0.7212 -1.2493 5 7 3.5000 -0.8263 -1.1907 6 6 4.1731 -1.4281 -2.1912 7 8 3.5700 -1.8832 -3.1400 8 6 5.6750 -1.5367 -2.1307 9 1 5.9619 -2.0977 -1.2413 10 6 6.1827 -2.2672 -3.3763 11 6 7.7085 -2.1255 -3.4332 12 6 8.0542 -0.6594 -3.6970 13 7 7.3506 0.2073 -2.7599 14 6 6.2724 -0.1603 -2.0666 15 8 5.7459 0.6609 -1.3459 16 7 2.0184 -0.6905 1.1961 17 6 2.1472 -0.0182 2.3571 18 8 1.8591 1.1587 2.4115 19 6 2.6501 -0.7285 3.5874 20 16 2.7115 0.4347 4.9728 21 6 3.3146 -0.6305 6.2402 22 1 3.5240 -1.6669 6.0202 23 6 3.5215 -0.1373 7.5210 24 7 3.2668 1.1259 7.7891 25 14 4.1534 -1.2686 8.8666 26 1 4.3539 -2.6320 8.3134 27 1 5.4454 -0.7496 9.3833 28 1 3.1640 -1.3233 9.9726 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3632 -1.0277 0.0005 32 1 1.6055 -1.7198 -1.2951 33 1 1.7516 -0.1583 -2.1370 34 1 3.9824 -0.4627 -0.4317 35 1 5.9139 -3.3220 -3.3182 36 1 5.7394 -1.8238 -4.2680 37 1 8.1035 -2.7449 -4.2385 38 1 8.1408 -2.4378 -2.4826 39 1 7.7657 -0.3987 -4.7153 40 1 9.1289 -0.5191 -3.5801 41 1 7.6877 1.1078 -2.6325 42 1 2.2492 -1.6317 1.1526 43 1 3.6494 -1.1202 3.3978 44 1 1.9779 -1.5507 3.8325 45 1 3.4110 1.4705 8.6843 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001358070879.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:06 Heat of formation + Delta-G solvation = -122.103610 kcal Electronic energy + Delta-G solvation = -27572.441878 eV Core-core repulsion = 23522.534102 eV Total energy + Delta-G solvation = -4049.907776 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.28401 -39.66132 -38.97960 -37.02021 -36.25911 -33.79950 -33.44370 -32.42374 -31.44597 -30.39582 -28.56192 -26.91050 -25.48189 -24.92226 -23.23311 -21.78296 -21.11766 -20.31742 -19.55590 -18.10187 -17.78397 -17.39772 -16.98679 -16.54211 -16.34230 -15.85166 -15.38886 -15.09224 -14.84263 -14.79851 -14.61941 -14.35776 -14.14091 -14.00636 -13.81064 -13.26741 -13.07573 -12.89545 -12.68696 -12.55847 -12.40128 -12.05015 -11.95515 -11.83172 -11.76155 -11.52538 -11.09916 -11.06473 -11.01171 -10.75084 -10.30475 -10.09667 -9.80002 -9.54910 -9.41489 -9.23590 -9.07556 -8.94732 -8.21846 -6.48785 -6.21205 -3.91348 2.01015 2.32284 2.81866 2.96332 3.05475 3.11533 3.21623 3.28375 3.32948 3.71477 3.98900 4.10681 4.20013 4.20732 4.23881 4.49015 4.65163 4.76464 4.79290 4.98317 5.06252 5.13783 5.14113 5.20193 5.21843 5.29312 5.40460 5.45932 5.50783 5.59021 5.68608 5.71118 5.89374 5.99932 6.10601 6.14762 6.25778 6.29754 6.63014 6.79378 7.28469 7.60264 7.69538 7.73317 7.94944 8.35865 8.61861 9.24211 10.86260 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.011547 B = 0.002510 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.368230 B =11153.671674 C =12648.670024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.132 3.868 3 H 0.096 0.904 4 C 0.113 3.887 5 N -0.710 5.710 6 C 0.531 3.469 7 O -0.540 6.540 8 C -0.129 4.129 9 H 0.132 0.868 10 C -0.104 4.104 11 C -0.139 4.139 12 C 0.106 3.894 13 N -0.715 5.715 14 C 0.527 3.473 15 O -0.537 6.537 16 N -0.737 5.737 17 C 0.533 3.467 18 O -0.513 6.513 19 C -0.153 4.153 20 S -0.059 6.059 21 C -0.535 4.535 22 H 0.073 0.927 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.415 0.585 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.405 0.595 42 H 0.397 0.603 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.725 -8.638 -26.155 28.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.027 3.973 3 H 0.114 0.886 4 C -0.011 4.011 5 N -0.363 5.363 6 C 0.315 3.685 7 O -0.417 6.417 8 C -0.153 4.153 9 H 0.150 0.850 10 C -0.142 4.142 11 C -0.177 4.177 12 C -0.018 4.018 13 N -0.368 5.368 14 C 0.312 3.688 15 O -0.414 6.414 16 N -0.392 5.392 17 C 0.320 3.680 18 O -0.387 6.387 19 C -0.304 4.304 20 S 0.167 5.833 21 C -0.683 4.683 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.253 0.747 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.109 0.891 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.099 0.901 41 H 0.241 0.759 42 H 0.231 0.769 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.425 -6.628 -26.251 27.827 hybrid contribution 1.344 -2.071 1.198 2.744 sum 7.769 -8.699 -25.053 27.635 Atomic orbital electron populations 1.22114 0.94176 1.02451 1.03181 1.21134 0.94875 0.98103 0.83224 0.88560 1.21724 0.79945 1.01427 0.98052 1.46043 1.07702 1.58404 1.24196 1.19764 0.88260 0.77995 0.82461 1.90711 1.69581 1.48320 1.33122 1.21488 0.94032 0.95872 1.03865 0.85025 1.21519 0.94592 1.01701 0.96434 1.21945 0.96291 0.95577 1.03892 1.21467 0.96962 0.90463 0.92883 1.45352 1.29663 1.17805 1.43990 1.19561 0.80360 0.89233 0.79656 1.90834 1.59533 1.51549 1.39438 1.46115 1.69628 1.13924 1.09509 1.20314 0.76808 0.87231 0.83690 1.90710 1.48012 1.15668 1.84279 1.23533 1.03614 1.04868 0.98400 1.85418 1.86289 1.12821 0.98735 1.22905 1.50837 0.98151 0.96391 0.90917 1.24996 0.95137 0.95530 0.97970 1.70025 1.45580 1.13223 1.21441 0.86120 0.78494 0.80136 0.80752 1.19635 1.20588 1.20572 0.91040 0.91553 0.92234 0.90711 0.90081 0.74745 0.89669 0.89870 0.89058 0.90561 0.91283 0.90137 0.75931 0.76872 0.89293 0.89247 0.92243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 9.48 37.16 0.35 -1.38 16 2 C 0.13 1.56 2.73 -67.93 -0.19 1.38 16 3 H 0.10 1.37 7.58 -51.92 -0.39 0.98 16 4 C 0.11 1.16 5.23 -4.04 -0.02 1.14 16 5 N -0.71 -7.90 4.87 -60.30 -0.29 -8.20 16 6 C 0.53 5.97 7.06 -10.99 -0.08 5.89 16 7 O -0.54 -7.33 15.79 5.56 0.09 -7.24 16 8 C -0.13 -1.08 2.78 -93.14 -0.26 -1.34 16 9 H 0.13 0.88 8.14 -51.93 -0.42 0.46 16 10 C -0.10 -0.65 4.78 -26.52 -0.13 -0.77 16 11 C -0.14 -0.50 6.02 -26.59 -0.16 -0.66 16 12 C 0.11 0.39 7.17 -4.49 -0.03 0.36 16 13 N -0.72 -4.88 5.45 -61.38 -0.33 -5.21 16 14 C 0.53 5.24 7.28 -11.87 -0.09 5.15 16 15 O -0.54 -7.48 15.56 5.55 0.09 -7.39 16 16 N -0.74 -9.62 4.52 -53.80 -0.24 -9.86 16 17 C 0.53 9.80 7.81 -10.98 -0.09 9.72 16 18 O -0.51 -11.54 15.52 5.55 0.09 -11.45 16 19 C -0.15 -3.07 6.16 36.01 0.22 -2.85 16 20 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 21 C -0.53 -15.23 9.50 30.94 0.29 -14.94 16 22 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 23 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 24 N -0.87 -26.25 13.22 55.49 0.73 -25.51 16 25 Si 0.92 21.43 29.55 -169.99 -5.02 16.40 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 27 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 28 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.41 5.00 6.80 -40.82 -0.28 4.72 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.62 7.72 -51.92 -0.40 0.22 16 37 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 38 H 0.08 0.27 8.12 -51.93 -0.42 -0.16 16 39 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 40 H 0.08 0.15 8.14 -51.92 -0.42 -0.27 16 41 H 0.40 2.52 8.80 -40.82 -0.36 2.16 16 42 H 0.40 4.17 8.60 -40.82 -0.35 3.82 16 43 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 44 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 45 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 389.33 15.07 5.87 5.87 Total: -1.00 -37.94 389.33 -8.33 -46.27 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -6.82 Total: 6.48 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: -0.26 Total: 3.68 kcal Atomic # 7 Polarization: -48.65 SS G_CDS: -0.14 Total: -48.79 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: 0.26 Total: -26.09 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -37.94 -8.33 -46.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001358070879.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.836 kcal (2) G-P(sol) polarization free energy of solvation -37.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds