Wall clock time and date at job start Wed Apr 1 2020 01:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09007 * 109.46781 * 2 1 4 4 C 1.53001 * 109.47028 * 240.00134 * 2 1 3 5 5 N 1.46494 * 109.47152 * 184.99606 * 4 2 1 6 6 C 1.34772 * 120.00341 * 180.02562 * 5 4 2 7 7 O 1.21280 * 120.00002 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.00299 * 180.02562 * 6 5 4 9 9 H 1.08995 * 109.40182 * 59.82440 * 8 6 5 10 10 C 1.53070 * 109.40360 * 179.56941 * 8 6 5 11 11 C 1.53348 * 108.42721 * 169.02223 * 10 8 6 12 12 C 1.52921 * 108.66308 * 292.45702 * 11 10 8 13 13 N 1.45752 * 110.48748 * 50.77056 * 12 11 10 14 14 C 1.33351 * 124.10378 * 340.91564 * 13 12 11 15 15 O 1.21286 * 118.24780 * 182.22995 * 14 13 12 16 16 N 1.46495 * 109.47255 * 119.99738 * 2 1 3 17 17 C 1.34779 * 120.00299 * 275.00141 * 16 2 1 18 18 O 1.21283 * 119.99753 * 359.97438 * 17 16 2 19 19 C 1.50701 * 119.99843 * 180.02562 * 17 16 2 20 20 S 1.81001 * 109.46896 * 179.97438 * 19 17 16 21 21 C 1.76192 * 100.00053 * 179.97438 * 20 19 17 22 22 H 1.08000 * 120.00436 * 0.02562 * 21 20 19 23 23 C 1.38805 * 119.99929 * 179.97438 * 21 20 19 24 24 N 1.31624 * 120.00253 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99752 * 179.72153 * 23 21 20 26 26 H 1.48497 * 109.47323 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.46790 * 120.00306 * 25 23 21 28 28 H 1.48501 * 109.47364 * 240.00335 * 25 23 21 29 29 H 1.09007 * 109.46775 * 299.99751 * 1 2 3 30 30 H 1.08995 * 109.47007 * 59.99701 * 1 2 3 31 31 H 1.08998 * 109.46350 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.46903 * 304.99445 * 4 2 1 33 33 H 1.09007 * 109.46992 * 64.99651 * 4 2 1 34 34 H 0.97006 * 120.00180 * 0.02562 * 5 4 2 35 35 H 1.08998 * 109.67573 * 288.76606 * 10 8 6 36 36 H 1.09007 * 109.67344 * 49.29090 * 10 8 6 37 37 H 1.09005 * 109.59936 * 172.71625 * 11 10 8 38 38 H 1.09002 * 109.62042 * 52.21681 * 11 10 8 39 39 H 1.09003 * 109.30351 * 290.44991 * 12 11 10 40 40 H 1.09009 * 109.13282 * 170.97172 * 12 11 10 41 41 H 0.96999 * 117.95286 * 160.90569 * 13 12 11 42 42 H 0.97004 * 119.99811 * 95.00687 * 16 2 1 43 43 H 1.08998 * 109.46989 * 60.00366 * 19 17 16 44 44 H 1.08996 * 109.47123 * 299.99392 * 19 17 16 45 45 H 0.97000 * 120.00481 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0401 -0.7212 -1.2493 5 7 3.5000 -0.8263 -1.1907 6 6 4.1731 -1.4281 -2.1912 7 8 3.5700 -1.8832 -3.1400 8 6 5.6750 -1.5367 -2.1307 9 1 5.9619 -2.0977 -1.2413 10 6 6.1827 -2.2672 -3.3763 11 6 7.7085 -2.1255 -3.4332 12 6 8.0542 -0.6594 -3.6970 13 7 7.3506 0.2073 -2.7599 14 6 6.2724 -0.1603 -2.0666 15 8 5.7459 0.6609 -1.3459 16 7 2.0184 -0.6905 1.1961 17 6 2.1472 -0.0182 2.3571 18 8 1.8591 1.1587 2.4115 19 6 2.6501 -0.7285 3.5874 20 16 2.7115 0.4347 4.9728 21 6 3.3146 -0.6305 6.2402 22 1 3.5240 -1.6669 6.0202 23 6 3.5215 -0.1373 7.5210 24 7 3.2668 1.1259 7.7891 25 14 4.1534 -1.2686 8.8666 26 1 4.3539 -2.6320 8.3134 27 1 5.4454 -0.7496 9.3833 28 1 3.1640 -1.3233 9.9726 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3632 -1.0277 0.0005 32 1 1.6055 -1.7198 -1.2951 33 1 1.7516 -0.1583 -2.1370 34 1 3.9824 -0.4627 -0.4317 35 1 5.9139 -3.3220 -3.3182 36 1 5.7394 -1.8238 -4.2680 37 1 8.1035 -2.7449 -4.2385 38 1 8.1408 -2.4378 -2.4826 39 1 7.7657 -0.3987 -4.7153 40 1 9.1289 -0.5191 -3.5801 41 1 7.6877 1.1078 -2.6325 42 1 2.2492 -1.6317 1.1526 43 1 3.6494 -1.1202 3.3978 44 1 1.9779 -1.5507 3.8325 45 1 3.4110 1.4705 8.6843 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001358070879.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:06 Heat of formation + Delta-G solvation = -152.868428 kcal Electronic energy + Delta-G solvation = -27573.775940 eV Core-core repulsion = 23522.534102 eV Total energy + Delta-G solvation = -4051.241839 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.02261 -40.88166 -39.99243 -37.76031 -37.29678 -34.82652 -34.58006 -34.09381 -32.66640 -30.98561 -30.02115 -27.69030 -27.64971 -25.52136 -23.80753 -22.90652 -21.88329 -21.63990 -20.17667 -19.84426 -18.71371 -18.17306 -17.96718 -17.76514 -17.27689 -16.89999 -16.86185 -16.38088 -16.16832 -16.02891 -15.62382 -15.24177 -15.02445 -14.90480 -14.65591 -14.53521 -14.36056 -14.07325 -13.94517 -13.57209 -13.28900 -13.15480 -13.03098 -12.96742 -12.91116 -12.57270 -12.42567 -12.26975 -12.07685 -11.94957 -11.70219 -11.15737 -11.13847 -10.95696 -10.86845 -10.26237 -10.21947 -10.15654 -10.10055 -8.66048 -8.34451 -6.12211 1.22209 1.26750 1.41546 1.46796 1.53400 1.58222 1.61158 2.07535 2.25875 2.29276 2.33200 2.99788 3.32167 3.42298 3.47242 3.54094 3.72729 3.85397 3.97017 4.03109 4.14652 4.22175 4.24461 4.32394 4.50121 4.50546 4.54762 4.65439 4.72744 4.75421 4.83907 4.98012 5.04629 5.07491 5.20073 5.31301 5.36918 5.42367 5.45735 5.73522 6.19223 6.20344 6.38011 6.47046 7.02804 7.06934 7.09653 7.23366 8.75038 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.011547 B = 0.002510 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.368230 B =11153.671674 C =12648.670024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.136 3.864 3 H 0.070 0.930 4 C 0.120 3.880 5 N -0.713 5.713 6 C 0.528 3.472 7 O -0.565 6.565 8 C -0.125 4.125 9 H 0.150 0.850 10 C -0.101 4.101 11 C -0.133 4.133 12 C 0.099 3.901 13 N -0.707 5.707 14 C 0.520 3.480 15 O -0.588 6.588 16 N -0.709 5.709 17 C 0.537 3.463 18 O -0.561 6.561 19 C -0.129 4.129 20 S -0.152 6.152 21 C -0.544 4.544 22 H 0.083 0.917 23 C 0.012 3.988 24 N -0.912 5.912 25 Si 1.000 3.000 26 H -0.256 1.256 27 H -0.274 1.274 28 H -0.274 1.274 29 H 0.042 0.958 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.410 0.590 35 H 0.091 0.909 36 H 0.068 0.932 37 H 0.115 0.885 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.106 0.894 41 H 0.406 0.594 42 H 0.415 0.585 43 H 0.109 0.891 44 H 0.110 0.890 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.168 -11.675 -27.472 31.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.032 3.968 3 H 0.088 0.912 4 C -0.004 4.004 5 N -0.365 5.365 6 C 0.313 3.687 7 O -0.445 6.445 8 C -0.149 4.149 9 H 0.168 0.832 10 C -0.139 4.139 11 C -0.171 4.171 12 C -0.024 4.024 13 N -0.358 5.358 14 C 0.306 3.694 15 O -0.469 6.469 16 N -0.364 5.364 17 C 0.323 3.677 18 O -0.438 6.438 19 C -0.280 4.280 20 S 0.075 5.925 21 C -0.692 4.692 22 H 0.101 0.899 23 C -0.193 4.193 24 N -0.549 5.549 25 Si 0.821 3.179 26 H -0.179 1.179 27 H -0.200 1.200 28 H -0.200 1.200 29 H 0.061 0.939 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.110 0.890 33 H 0.102 0.898 34 H 0.248 0.752 35 H 0.109 0.891 36 H 0.086 0.914 37 H 0.134 0.866 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.124 0.876 41 H 0.243 0.757 42 H 0.252 0.748 43 H 0.128 0.872 44 H 0.129 0.871 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.902 -9.720 -27.643 30.349 hybrid contribution 0.902 -1.130 1.422 2.028 sum 8.804 -10.851 -26.221 29.712 Atomic orbital electron populations 1.22066 0.92890 1.03621 1.02802 1.21166 0.95776 0.96847 0.83058 0.91198 1.21687 0.79784 1.02056 0.96851 1.46134 1.07976 1.58194 1.24150 1.20224 0.89450 0.77222 0.81796 1.90694 1.70419 1.49493 1.33881 1.21549 0.91931 0.95528 1.05911 0.83228 1.21533 0.96426 1.01452 0.94489 1.21970 0.94146 0.95744 1.05197 1.21781 0.98048 0.90099 0.92466 1.45454 1.28652 1.18399 1.43256 1.19861 0.80768 0.89383 0.79377 1.90812 1.61282 1.52957 1.41844 1.45818 1.67839 1.14497 1.08270 1.20051 0.76575 0.86550 0.84523 1.90703 1.50416 1.17674 1.85052 1.23370 1.05515 1.03195 0.95969 1.85616 1.86709 1.17322 1.02818 1.23230 1.50722 0.98429 0.96791 0.89883 1.26146 0.95124 0.97210 1.00808 1.70191 1.46919 1.15530 1.22231 0.84894 0.77797 0.78240 0.76934 1.17925 1.19960 1.19993 0.93874 0.89511 0.90232 0.88968 0.89814 0.75246 0.89051 0.91367 0.86631 0.90001 0.90317 0.87592 0.75736 0.74835 0.87241 0.87144 0.92026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.20 9.48 71.98 0.68 -2.51 16 2 C 0.14 3.16 2.73 45.00 0.12 3.28 16 3 H 0.07 2.06 7.58 -2.38 -0.02 2.04 16 4 C 0.12 2.32 5.23 86.38 0.45 2.78 16 5 N -0.71 -15.38 4.87 -463.08 -2.26 -17.64 16 6 C 0.53 11.41 7.06 87.66 0.62 12.03 16 7 O -0.57 -14.82 15.79 -3.03 -0.05 -14.87 16 8 C -0.13 -1.95 2.78 -12.43 -0.03 -1.99 16 9 H 0.15 1.74 8.14 -2.39 -0.02 1.72 16 10 C -0.10 -1.06 4.78 30.73 0.15 -0.91 16 11 C -0.13 -0.55 6.02 30.68 0.18 -0.36 16 12 C 0.10 0.47 7.17 86.49 0.62 1.09 16 13 N -0.71 -8.77 5.45 -467.30 -2.55 -11.32 16 14 C 0.52 10.08 7.28 87.72 0.64 10.72 16 15 O -0.59 -16.78 15.56 -3.05 -0.05 -16.82 16 16 N -0.71 -17.83 4.52 -442.52 -2.00 -19.83 16 17 C 0.54 19.80 7.81 87.66 0.68 20.48 16 18 O -0.56 -26.18 15.52 -3.04 -0.05 -26.23 16 19 C -0.13 -5.11 6.16 71.24 0.44 -4.67 16 20 S -0.15 -8.49 20.57 -56.49 -1.16 -9.65 16 21 C -0.54 -31.11 9.50 67.96 0.65 -30.47 16 22 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 23 C 0.01 0.67 5.49 84.86 0.47 1.13 16 24 N -0.91 -56.43 13.22 21.65 0.29 -56.14 16 25 Si 1.00 43.68 29.55 68.60 2.03 45.71 16 26 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 27 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 28 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 29 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16 30 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 34 H 0.41 9.83 6.80 -92.70 -0.63 9.20 16 35 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.07 0.93 7.72 -2.38 -0.02 0.92 16 37 H 0.12 -0.02 8.14 -2.38 -0.02 -0.04 16 38 H 0.08 0.30 8.12 -2.39 -0.02 0.28 16 39 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 40 H 0.11 0.03 8.14 -2.38 -0.02 0.02 16 41 H 0.41 4.76 8.80 -92.71 -0.82 3.94 16 42 H 0.41 7.76 8.60 -92.71 -0.80 6.96 16 43 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16 44 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 45 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -86.45 389.33 -1.33 -87.78 By element: Atomic # 1 Polarization: 29.61 SS G_CDS: -1.21 Total: 28.41 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: 5.67 Total: 10.60 kcal Atomic # 7 Polarization: -98.41 SS G_CDS: -6.52 Total: -104.93 kcal Atomic # 8 Polarization: -57.77 SS G_CDS: -0.14 Total: -57.92 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: -8.49 SS G_CDS: -1.16 Total: -9.65 kcal Total: -86.45 -1.33 -87.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001358070879.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.090 kcal (2) G-P(sol) polarization free energy of solvation -86.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds