Wall clock time and date at job start Wed Apr 1 2020 02:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46502 * 109.47094 * 2 1 4 4 C 1.34777 * 120.00034 * 179.97438 * 3 2 1 5 5 O 1.21280 * 119.99834 * 0.02562 * 4 3 2 6 6 C 1.50693 * 120.00041 * 179.97438 * 4 3 2 7 7 C 1.50703 * 109.47035 * 180.02562 * 6 4 3 8 8 O 1.21270 * 120.00177 * 0.02562 * 7 6 4 9 9 N 1.34780 * 119.99527 * 180.02562 * 7 6 4 10 10 C 1.46508 * 119.99226 * 174.98007 * 9 7 6 11 11 C 1.53000 * 115.55118 * 65.40583 * 10 9 7 12 12 N 1.46500 * 109.46763 * 85.77631 * 11 10 9 13 13 C 1.34780 * 119.99928 * 174.97079 * 12 11 10 14 14 O 1.21285 * 119.99910 * 0.02562 * 13 12 11 15 15 C 1.50697 * 120.00252 * 179.97438 * 13 12 11 16 16 S 1.81002 * 109.47047 * 180.02562 * 15 13 12 17 17 C 1.76206 * 99.99902 * 180.02562 * 16 15 13 18 18 H 1.08005 * 119.99744 * 0.02562 * 17 16 15 19 19 C 1.38792 * 120.00009 * 179.97438 * 17 16 15 20 20 N 1.31639 * 120.00143 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00132 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46958 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47227 * 120.00324 * 21 19 17 24 24 H 1.48505 * 109.47239 * 240.00508 * 21 19 17 25 25 C 1.52995 * 117.49545 * 279.73001 * 10 9 7 26 26 C 1.53005 * 117.49399 * 211.07589 * 10 9 7 27 27 H 1.08995 * 109.46880 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46878 * 300.00038 * 1 2 3 29 29 H 1.09002 * 109.46982 * 59.99634 * 1 2 3 30 30 H 1.08992 * 109.46802 * 239.99914 * 2 1 3 31 31 H 1.08996 * 109.46616 * 119.99767 * 2 1 3 32 32 H 0.97001 * 120.00234 * 0.02562 * 3 2 1 33 33 H 1.09002 * 109.47614 * 300.00314 * 6 4 3 34 34 H 1.09002 * 109.47173 * 60.00478 * 6 4 3 35 35 H 0.96995 * 120.00326 * 354.97657 * 9 7 6 36 36 H 1.08997 * 109.46843 * 205.76645 * 11 10 9 37 37 H 1.08997 * 109.46841 * 325.77526 * 11 10 9 38 38 H 0.96999 * 120.00414 * 354.96297 * 12 11 10 39 39 H 1.08994 * 109.47198 * 300.00081 * 15 13 12 40 40 H 1.09000 * 109.46611 * 60.00026 * 15 13 12 41 41 H 0.96994 * 119.99805 * 179.97438 * 20 19 17 42 42 H 1.08994 * 117.50248 * 0.02562 * 25 10 9 43 43 H 1.09007 * 117.49664 * 145.02746 * 25 10 9 44 44 H 1.08997 * 117.49509 * 214.98347 * 26 10 9 45 45 H 1.09003 * 117.50114 * 359.97194 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3435 1.6275 0.0005 5 8 4.1316 0.7057 0.0005 6 6 3.8458 3.0483 -0.0001 7 6 5.3528 3.0483 0.0001 8 8 5.9592 1.9980 0.0001 9 7 6.0266 4.2155 0.0001 10 6 7.4875 4.2179 0.1113 11 6 8.2397 3.5901 -1.0638 12 7 8.4369 4.5959 -2.1106 13 6 9.1677 4.2972 -3.2030 14 8 9.6616 3.1957 -3.3197 15 6 9.3701 5.3316 -4.2801 16 16 10.3866 4.6325 -5.6046 17 6 10.4617 6.0148 -6.6947 18 1 9.9587 6.9348 -6.4356 19 6 11.1681 5.9218 -7.8858 20 7 11.7816 4.8006 -8.2013 21 14 11.2484 7.3874 -9.0411 22 1 10.4820 8.5187 -8.4595 23 1 12.6645 7.7936 -9.2279 24 1 10.6628 7.0154 -10.3541 25 6 8.0899 4.0484 1.5074 26 6 8.1407 5.4110 0.8119 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.3881 2.1185 0.0004 33 1 3.4829 3.5617 -0.8905 34 1 3.4821 3.5626 0.8895 35 1 5.5444 5.0539 -0.0735 36 1 9.2088 3.2265 -0.7222 37 1 7.6598 2.7583 -1.4637 38 1 8.0415 5.4767 -2.0176 39 1 8.4026 5.6297 -4.6840 40 1 9.8715 6.2024 -3.8578 41 1 12.2749 4.7355 -9.0339 42 1 7.3995 3.9347 2.3431 43 1 9.0225 3.4899 1.5887 44 1 9.1064 5.7484 0.4358 45 1 7.4836 6.1944 1.1897 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001358647953.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:21:31 Heat of formation + Delta-G solvation = -117.739444 kcal Electronic energy + Delta-G solvation = -26671.506596 eV Core-core repulsion = 22621.788064 eV Total energy + Delta-G solvation = -4049.718532 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.53147 -40.75464 -39.96606 -38.33681 -36.19905 -35.25274 -34.57963 -34.03804 -32.29198 -31.28917 -30.23456 -27.88723 -27.31382 -24.33771 -23.62775 -22.76486 -21.73408 -21.41433 -20.77120 -19.83317 -18.36457 -18.17535 -17.75369 -17.46888 -17.05932 -16.88624 -16.84225 -16.62733 -16.36602 -15.99734 -15.73197 -15.45522 -14.96516 -14.70141 -14.58825 -14.43940 -14.41264 -14.25533 -13.51509 -13.35873 -13.24489 -13.15778 -12.94679 -12.90532 -12.68696 -12.59177 -12.44767 -12.34022 -11.93263 -11.70762 -11.51363 -11.16262 -11.15601 -10.96146 -10.49135 -10.26240 -10.14816 -10.07167 -10.03388 -8.67702 -8.34183 -6.13121 1.26071 1.42336 1.46924 1.58045 1.58679 1.63591 1.74759 1.78112 2.14236 2.27658 2.46200 2.82794 3.00060 3.32610 3.44266 3.57863 3.78408 3.87733 3.98043 4.03381 4.17459 4.20292 4.29560 4.38106 4.41767 4.49388 4.51763 4.54739 4.60788 4.73908 4.80460 4.96542 4.97768 5.05693 5.18460 5.26522 5.34332 5.42434 5.50071 5.56038 6.20545 6.49158 6.57657 6.64238 7.06803 7.23174 7.31406 7.44905 8.75445 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.013122 B = 0.001985 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.283590 B =14102.329914 C =15362.093665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.110 3.890 3 N -0.718 5.718 4 C 0.498 3.502 5 O -0.562 6.562 6 C -0.150 4.150 7 C 0.502 3.498 8 O -0.547 6.547 9 N -0.683 5.683 10 C 0.071 3.929 11 C 0.157 3.843 12 N -0.702 5.702 13 C 0.529 3.471 14 O -0.572 6.572 15 C -0.124 4.124 16 S -0.160 6.160 17 C -0.543 4.543 18 H 0.086 0.914 19 C 0.010 3.990 20 N -0.914 5.914 21 Si 1.002 2.998 22 H -0.253 1.253 23 H -0.275 1.275 24 H -0.275 1.275 25 C -0.168 4.168 26 C -0.128 4.128 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.044 0.956 31 H 0.050 0.950 32 H 0.420 0.580 33 H 0.160 0.840 34 H 0.170 0.830 35 H 0.424 0.576 36 H 0.060 0.940 37 H 0.042 0.958 38 H 0.418 0.582 39 H 0.112 0.888 40 H 0.116 0.884 41 H 0.270 0.730 42 H 0.109 0.891 43 H 0.092 0.908 44 H 0.110 0.890 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.660 7.006 24.411 36.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.014 4.014 3 N -0.374 5.374 4 C 0.284 3.716 5 O -0.439 6.439 6 C -0.192 4.192 7 C 0.288 3.712 8 O -0.422 6.422 9 N -0.338 5.338 10 C -0.017 4.017 11 C 0.032 3.968 12 N -0.356 5.356 13 C 0.315 3.685 14 O -0.450 6.450 15 C -0.275 4.275 16 S 0.067 5.933 17 C -0.690 4.690 18 H 0.105 0.895 19 C -0.194 4.194 20 N -0.550 5.550 21 Si 0.824 3.176 22 H -0.177 1.177 23 H -0.200 1.200 24 H -0.201 1.201 25 C -0.207 4.207 26 C -0.166 4.166 27 H 0.097 0.903 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.257 0.743 33 H 0.178 0.822 34 H 0.187 0.813 35 H 0.263 0.737 36 H 0.078 0.922 37 H 0.060 0.940 38 H 0.256 0.744 39 H 0.130 0.870 40 H 0.134 0.866 41 H 0.079 0.921 42 H 0.127 0.873 43 H 0.111 0.889 44 H 0.128 0.872 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -24.797 3.645 24.139 34.798 hybrid contribution -0.630 2.036 -0.853 2.296 sum -25.426 5.681 23.286 34.943 Atomic orbital electron populations 1.21935 0.91453 1.04051 1.03589 1.21300 0.96415 0.82938 1.00786 1.45907 1.06305 1.09594 1.75573 1.20780 0.82780 0.91838 0.76242 1.90890 1.56298 1.47771 1.48954 1.21640 0.91594 0.95368 1.10613 1.20829 0.90771 0.83584 0.76028 1.90897 1.70709 1.32857 1.47760 1.45109 1.04253 1.09051 1.75434 1.20477 0.81269 1.07008 0.92955 1.20816 0.98775 0.90438 0.86750 1.45643 1.53314 1.17546 1.19139 1.20243 0.77616 0.87785 0.82818 1.90714 1.50212 1.25285 1.78839 1.23333 1.05294 1.01155 0.97702 1.85739 1.66311 1.22896 1.18375 1.23242 1.38724 0.99884 1.07194 0.89549 1.26191 0.93905 1.00201 0.99147 1.70213 1.32366 1.27888 1.24547 0.84860 0.78350 0.77272 0.77154 1.17659 1.19998 1.20075 1.23416 1.02722 1.00665 0.93886 1.23490 1.02797 0.90997 0.99279 0.90348 0.90530 0.90966 0.93732 0.93117 0.74260 0.82243 0.81251 0.73708 0.92153 0.93978 0.74417 0.87013 0.86562 0.92055 0.87266 0.88917 0.87176 0.84294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 10.03 71.98 0.72 -0.06 16 2 C 0.11 1.44 6.39 86.38 0.55 1.99 16 3 N -0.72 -7.82 5.56 -463.07 -2.57 -10.39 16 4 C 0.50 9.50 7.82 87.65 0.69 10.18 16 5 O -0.56 -19.10 14.18 20.41 0.29 -18.81 16 6 C -0.15 -1.34 6.19 29.10 0.18 -1.16 16 7 C 0.50 9.96 7.64 87.66 0.67 10.63 16 8 O -0.55 -18.92 12.96 20.44 0.26 -18.65 16 9 N -0.68 -8.57 5.45 -422.91 -2.31 -10.88 16 10 C 0.07 1.24 1.79 3.60 0.01 1.24 16 11 C 0.16 4.45 5.63 86.38 0.49 4.93 16 12 N -0.70 -18.81 5.45 -463.06 -2.52 -21.33 16 13 C 0.53 20.72 7.85 87.66 0.69 21.41 16 14 O -0.57 -29.06 15.86 -3.05 -0.05 -29.11 16 15 C -0.12 -4.94 6.16 71.23 0.44 -4.50 16 16 S -0.16 -9.12 20.57 -56.49 -1.16 -10.29 16 17 C -0.54 -31.12 9.50 67.95 0.65 -30.47 16 18 H 0.09 4.54 7.80 -2.91 -0.02 4.52 16 19 C 0.01 0.57 5.49 84.85 0.47 1.04 16 20 N -0.91 -57.02 13.22 21.65 0.29 -56.74 16 21 Si 1.00 43.65 29.55 68.60 2.03 45.67 16 22 H -0.25 -10.14 7.11 99.48 0.71 -9.43 16 23 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 24 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 25 C -0.17 -2.62 10.11 30.62 0.31 -2.31 16 26 C -0.13 -1.26 9.95 30.62 0.30 -0.95 16 27 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.08 0.19 8.14 -2.39 -0.02 0.17 16 29 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.42 0.79 8.47 -92.71 -0.79 0.01 16 33 H 0.16 0.25 8.14 -2.39 -0.02 0.23 16 34 H 0.17 -0.15 8.14 -2.39 -0.02 -0.16 16 35 H 0.42 1.26 8.83 -92.71 -0.82 0.45 16 36 H 0.06 1.92 7.89 -2.39 -0.02 1.90 16 37 H 0.04 1.56 6.83 -2.39 -0.02 1.55 16 38 H 0.42 7.40 8.37 -92.71 -0.78 6.63 16 39 H 0.11 3.96 8.14 -2.40 -0.02 3.94 16 40 H 0.12 4.03 8.14 -2.39 -0.02 4.01 16 41 H 0.27 15.63 8.31 -92.71 -0.77 14.85 16 42 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.09 1.68 8.05 -2.38 -0.02 1.66 16 44 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.14 0.43 8.14 -2.39 -0.02 0.41 16 Total: -1.00 -103.97 400.92 -0.93 -104.90 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -1.34 Total: 13.65 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: 6.15 Total: 11.98 kcal Atomic # 7 Polarization: -92.22 SS G_CDS: -7.11 Total: -99.34 kcal Atomic # 8 Polarization: -67.08 SS G_CDS: 0.51 Total: -66.57 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: -9.12 SS G_CDS: -1.16 Total: -10.29 kcal Total: -103.97 -0.93 -104.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001358647953.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.841 kcal (2) G-P(sol) polarization free energy of solvation -103.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -104.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds