Wall clock time and date at job start Wed Apr 1 2020 02:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 O 1.21287 * 119.99950 * 2 1 4 4 N 1.34779 * 120.00160 * 179.97438 * 2 1 3 5 5 C 1.46500 * 120.00081 * 180.02562 * 4 2 1 6 6 H 1.08999 * 109.47341 * 35.00110 * 5 4 2 7 7 C 1.53002 * 109.47139 * 275.00481 * 5 4 2 8 8 C 1.50700 * 109.47073 * 155.00379 * 5 4 2 9 9 O 1.21279 * 120.00150 * 359.97438 * 8 5 4 10 10 N 1.34780 * 119.99841 * 180.02562 * 8 5 4 11 11 C 1.46495 * 119.99894 * 174.99599 * 10 8 5 12 12 C 1.53011 * 115.54670 * 279.60411 * 11 10 8 13 13 N 1.46497 * 109.47192 * 324.96949 * 12 11 10 14 14 C 1.34773 * 119.99788 * 174.91305 * 13 12 11 15 15 O 1.21280 * 120.00310 * 359.97438 * 14 13 12 16 16 C 1.50709 * 119.99698 * 179.97438 * 14 13 12 17 17 S 1.80998 * 109.46934 * 179.97438 * 16 14 13 18 18 C 1.76197 * 99.99898 * 180.02562 * 17 16 14 19 19 H 1.08002 * 119.99925 * 0.02562 * 18 17 16 20 20 C 1.38803 * 119.99847 * 179.97438 * 18 17 16 21 21 N 1.31638 * 119.99666 * 179.97438 * 20 18 17 22 22 Si 1.86794 * 120.00080 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47147 * 89.99696 * 22 20 18 24 24 H 1.48497 * 109.47152 * 209.99605 * 22 20 18 25 25 H 1.48497 * 109.47265 * 329.99703 * 22 20 18 26 26 C 1.52993 * 117.50340 * 133.89971 * 11 10 8 27 27 C 1.52998 * 117.50430 * 65.27196 * 11 10 8 28 28 H 1.09006 * 109.47668 * 239.99973 * 1 2 3 29 29 H 1.09003 * 109.47493 * 0.02562 * 1 2 3 30 30 H 1.09006 * 109.47231 * 120.00167 * 1 2 3 31 31 H 0.96996 * 119.99930 * 0.02562 * 4 2 1 32 32 H 1.09002 * 109.47102 * 180.02562 * 7 5 4 33 33 H 1.09000 * 109.47225 * 300.00004 * 7 5 4 34 34 H 1.08996 * 109.47431 * 59.99919 * 7 5 4 35 35 H 0.97004 * 120.00210 * 354.99330 * 10 8 5 36 36 H 1.09003 * 109.47042 * 84.96810 * 12 11 10 37 37 H 1.09000 * 109.46642 * 204.96970 * 12 11 10 38 38 H 0.97008 * 119.99766 * 354.90844 * 13 12 11 39 39 H 1.08998 * 109.47320 * 300.00086 * 16 14 13 40 40 H 1.08997 * 109.46798 * 59.99752 * 16 14 13 41 41 H 0.97003 * 119.99424 * 180.02562 * 21 20 18 42 42 H 1.09009 * 117.49885 * 359.97438 * 26 11 10 43 43 H 1.09004 * 117.50469 * 145.01677 * 26 11 10 44 44 H 1.08993 * 117.50101 * 214.98267 * 27 11 10 45 45 H 1.08998 * 117.49441 * 359.97438 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6458 -1.1672 0.0011 6 1 4.0089 -0.3253 0.5905 7 6 4.1564 -1.0416 -1.4358 8 6 4.1479 -2.4548 0.6020 9 8 3.3597 -3.2900 0.9918 10 7 5.4730 -2.6777 0.7070 11 6 5.9619 -3.8783 1.3894 12 6 5.9857 -3.8052 2.9176 13 7 6.3221 -2.4422 3.3361 14 6 6.3011 -2.1141 4.6431 15 8 6.0033 -2.9471 5.4728 16 6 6.6478 -0.7121 5.0737 17 16 6.5285 -0.5874 6.8755 18 6 6.9714 1.1038 7.0951 19 1 7.2108 1.7151 6.2375 20 6 7.0116 1.6507 8.3702 21 7 7.3430 2.9140 8.5343 22 14 6.5970 0.5935 9.8534 23 1 7.8333 -0.0536 10.3613 24 1 6.0100 1.4446 10.9193 25 1 5.6179 -0.4509 9.4587 26 6 7.0697 -4.6795 0.7028 27 6 5.6439 -5.2323 0.7519 28 1 -0.3635 -0.5138 0.8900 29 1 -0.3634 1.0277 -0.0005 30 1 -0.3634 -0.5139 -0.8900 31 1 1.6958 -2.0072 0.0005 32 1 5.2464 -1.0421 -1.4354 33 1 3.7933 -1.8835 -2.0252 34 1 3.7932 -0.1104 -1.8704 35 1 6.1029 -2.0432 0.3308 36 1 5.0047 -4.0739 3.3095 37 1 6.7333 -4.4986 3.3028 38 1 6.5601 -1.7758 2.6725 39 1 7.6645 -0.4763 4.7593 40 1 5.9532 -0.0088 4.6144 41 1 7.3715 3.2961 9.4255 42 1 7.4346 -4.3135 -0.2570 43 1 7.8160 -5.1547 1.3396 44 1 5.4521 -6.0710 1.4210 45 1 5.0706 -5.2298 -0.1751 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001358648435.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:41 Heat of formation + Delta-G solvation = -116.052681 kcal Electronic energy + Delta-G solvation = -27560.386792 eV Core-core repulsion = 23510.741404 eV Total energy + Delta-G solvation = -4049.645388 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.71770 -40.81125 -40.21323 -38.58125 -36.06146 -35.32446 -34.68805 -34.28772 -32.21044 -31.40179 -29.72671 -27.99021 -27.45349 -25.77791 -23.60632 -22.52431 -21.86749 -21.46385 -20.77885 -19.94362 -18.95726 -18.26944 -17.87208 -17.46547 -17.12394 -17.04841 -16.82306 -16.53330 -16.26505 -16.03931 -15.61788 -15.27528 -15.16636 -14.93607 -14.69885 -14.63295 -14.51308 -13.83972 -13.63733 -13.53703 -13.45100 -13.36098 -13.28569 -13.02728 -13.01727 -12.69671 -12.67159 -12.40559 -11.97575 -11.87314 -11.38466 -11.18773 -11.10245 -11.06640 -10.91831 -10.57072 -10.37961 -10.22182 -10.16767 -9.02467 -8.53378 -6.24654 0.95347 1.29637 1.36779 1.44324 1.49540 1.51828 1.54696 1.69398 2.13695 2.23680 2.34100 2.65587 2.72024 2.84849 3.34019 3.58931 3.74949 3.84339 3.85598 3.96971 4.00035 4.07899 4.16892 4.40871 4.45890 4.48247 4.57840 4.59929 4.62847 4.66622 4.75221 4.77328 5.00706 5.05813 5.13934 5.20351 5.22705 5.29235 5.44641 5.68895 6.09492 6.32712 6.37044 6.43995 6.91662 7.04361 7.11189 7.15126 8.59144 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.009571 B = 0.002906 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2924.794480 B = 9631.428520 C =11671.476841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.508 3.492 3 O -0.593 6.593 4 N -0.711 5.711 5 C 0.120 3.880 6 H 0.103 0.897 7 C -0.150 4.150 8 C 0.520 3.480 9 O -0.555 6.555 10 N -0.682 5.682 11 C 0.066 3.934 12 C 0.155 3.845 13 N -0.705 5.705 14 C 0.534 3.466 15 O -0.561 6.561 16 C -0.111 4.111 17 S -0.174 6.174 18 C -0.530 4.530 19 H 0.062 0.938 20 C 0.046 3.954 21 N -0.916 5.916 22 Si 0.914 3.086 23 H -0.260 1.260 24 H -0.259 1.259 25 H -0.239 1.239 26 C -0.135 4.135 27 C -0.153 4.153 28 H 0.103 0.897 29 H 0.090 0.910 30 H 0.116 0.884 31 H 0.416 0.584 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.421 0.579 36 H 0.048 0.952 37 H 0.085 0.915 38 H 0.413 0.587 39 H 0.118 0.882 40 H 0.107 0.893 41 H 0.277 0.723 42 H 0.125 0.875 43 H 0.119 0.881 44 H 0.103 0.897 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.031 -15.287 -27.357 31.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.297 3.703 3 O -0.473 6.473 4 N -0.365 5.365 5 C 0.011 3.989 6 H 0.121 0.879 7 C -0.209 4.209 8 C 0.306 3.694 9 O -0.432 6.432 10 N -0.335 5.335 11 C -0.022 4.022 12 C 0.030 3.970 13 N -0.359 5.359 14 C 0.319 3.681 15 O -0.439 6.439 16 C -0.262 4.262 17 S 0.053 5.947 18 C -0.678 4.678 19 H 0.080 0.920 20 C -0.159 4.159 21 N -0.554 5.554 22 Si 0.736 3.264 23 H -0.184 1.184 24 H -0.183 1.183 25 H -0.163 1.163 26 C -0.172 4.172 27 C -0.191 4.191 28 H 0.121 0.879 29 H 0.109 0.891 30 H 0.135 0.865 31 H 0.254 0.746 32 H 0.116 0.884 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.260 0.740 36 H 0.066 0.934 37 H 0.103 0.897 38 H 0.250 0.750 39 H 0.136 0.864 40 H 0.125 0.875 41 H 0.087 0.913 42 H 0.143 0.857 43 H 0.137 0.863 44 H 0.122 0.878 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.635 -16.363 -25.605 31.103 hybrid contribution 0.359 1.524 -0.340 1.602 sum -6.276 -14.839 -25.945 30.541 Atomic orbital electron populations 1.21936 0.88168 1.06187 1.06375 1.21564 0.92331 0.82505 0.73917 1.90727 1.71985 1.32922 1.51715 1.45856 1.05835 1.09866 1.74978 1.20848 0.82640 0.95588 0.99819 0.87909 1.22094 1.03104 1.03273 0.92391 1.20761 0.82951 0.87911 0.77770 1.90714 1.55943 1.47098 1.49407 1.45072 1.06298 1.24408 1.57766 1.20686 1.06827 0.85783 0.88937 1.21075 1.00639 0.83426 0.91871 1.45533 1.70375 1.13721 1.06276 1.19977 0.76387 0.88745 0.82957 1.90695 1.48629 1.51822 1.52798 1.23256 1.06889 0.97180 0.98862 1.84712 1.91137 1.14161 1.04738 1.22456 1.53226 0.95115 0.96956 0.91973 1.25564 0.93303 0.95827 1.01241 1.70021 1.47105 1.13617 1.24692 0.85868 0.80779 0.80084 0.79659 1.18438 1.18285 1.16260 1.23611 0.91470 0.99206 1.02918 1.23247 0.99068 0.94293 1.02515 0.87879 0.89076 0.86533 0.74557 0.88411 0.90936 0.91887 0.74007 0.93407 0.89709 0.75031 0.86378 0.87453 0.91321 0.85670 0.86320 0.87820 0.88084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.88 10.32 71.23 0.74 -1.14 16 2 C 0.51 10.01 7.90 87.65 0.69 10.70 16 3 O -0.59 -17.21 16.75 -3.05 -0.05 -17.26 16 4 N -0.71 -11.77 4.95 -446.10 -2.21 -13.98 16 5 C 0.12 1.86 2.99 44.25 0.13 1.99 16 6 H 0.10 1.93 7.58 -2.39 -0.02 1.92 16 7 C -0.15 -1.48 9.38 71.98 0.68 -0.80 16 8 C 0.52 8.69 7.15 87.66 0.63 9.32 16 9 O -0.55 -13.18 15.41 -3.03 -0.05 -13.23 16 10 N -0.68 -7.59 4.32 -422.93 -1.83 -9.42 16 11 C 0.07 0.87 2.02 3.61 0.01 0.88 16 12 C 0.15 3.28 5.90 86.38 0.51 3.78 16 13 N -0.71 -16.66 5.40 -463.04 -2.50 -19.16 16 14 C 0.53 18.67 7.85 87.66 0.69 19.36 16 15 O -0.56 -24.49 15.86 -3.03 -0.05 -24.54 16 16 C -0.11 -4.24 6.16 71.24 0.44 -3.80 16 17 S -0.17 -8.94 18.55 -56.49 -1.05 -9.98 16 18 C -0.53 -31.26 10.04 67.96 0.68 -30.58 16 19 H 0.06 3.86 8.03 -2.91 -0.02 3.84 16 20 C 0.05 2.74 5.50 84.86 0.47 3.21 16 21 N -0.92 -56.39 13.97 21.65 0.30 -56.08 16 22 Si 0.91 45.56 27.74 68.60 1.90 47.46 16 23 H -0.26 -12.54 7.11 99.48 0.71 -11.83 16 24 H -0.26 -12.08 7.11 99.48 0.71 -11.37 16 25 H -0.24 -11.94 6.74 99.48 0.67 -11.27 16 26 C -0.13 -0.95 10.10 30.59 0.31 -0.64 16 27 C -0.15 -1.77 9.56 30.59 0.29 -1.48 16 28 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 29 H 0.09 1.12 8.12 -2.39 -0.02 1.10 16 30 H 0.12 0.64 8.14 -2.38 -0.02 0.62 16 31 H 0.42 5.88 7.79 -92.71 -0.72 5.16 16 32 H 0.10 0.43 7.46 -2.39 -0.02 0.41 16 33 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.42 2.04 8.12 -92.71 -0.75 1.28 16 36 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.08 1.70 7.91 -2.39 -0.02 1.68 16 38 H 0.41 7.08 7.76 -92.70 -0.72 6.36 16 39 H 0.12 4.03 8.14 -2.40 -0.02 4.01 16 40 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16 41 H 0.28 15.75 8.31 -92.71 -0.77 14.98 16 42 H 0.13 0.38 8.14 -2.38 -0.02 0.36 16 43 H 0.12 0.72 8.05 -2.38 -0.02 0.70 16 44 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -87.05 399.29 -0.46 -87.51 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: -1.19 Total: 17.90 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: 6.26 Total: 10.78 kcal Atomic # 7 Polarization: -92.41 SS G_CDS: -6.23 Total: -98.64 kcal Atomic # 8 Polarization: -54.88 SS G_CDS: -0.15 Total: -55.03 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.90 Total: 47.46 kcal Atomic # 16 Polarization: -8.94 SS G_CDS: -1.05 Total: -9.98 kcal Total: -87.05 -0.46 -87.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001358648435.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.538 kcal (2) G-P(sol) polarization free energy of solvation -87.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds